RLG00000016192

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001838
Physical Location & Seq
Reverse (-)
4607674 .. 4614339
6666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016192

Sequence Viewer

Length: 4026 bp
ATGACCACAGCCATGACCACTACTACTAGTTCATCACAGATTCTATGCCACACGGCGGCTTTCGTCTCCGAAACACTTTCGCAATCGGAGCTCCGCCGCCACCTCTTCTCCACGCTCCGCCGCAGGCTCCCGCCACCGTTGGGTTCCAGCCAAACCGCGGCTATTAAATCCCTCAACCTCGCCGTGGAAACCCTAGAAAACGCCATCGCCGAATCCAGGTCAGCCGTCCGGACCTCCTCCCTCCTCCTCTGTGAGAAGCTCCTCCTCTCCGGGCCCAAAAGCCCCTTCTCCTCGTTCCTCCTCTCCCTCATCTACGGCCTCTGCCGCCGCTCGATCGACGCCGCCCTCTGCATCCTCGAGATCTTCCGATCCGAGCCGGCCCTCTCCCGGACGGAATTGGCTCCGGTGCTGTTCGAGGAGCTCTTCCTCGTCCACCTCCTCCCGGTTCTCCAGTGGTACAATCGCCGACGATCGCAGATTCTGCCGTCGCTGTCCCCAAATGTCAGCTACGAAAACGACGACGACGACGTTTCAATCAACGACATGTCGGTGGCGTTTCCGGCGGGGTCGAATTCGCTGTCGAAGATGAGCGGGAACCAGACGGCGGGGCTGAAGGAGCTGGAGAGCAGCTACGAGAGGGTTTTGGATGAGAATTGTAGGGTTTTCAGTGAGTATTTCAGGGAGGTTTTGGAGAATAAAGATGGAGGAAGAGTGATTGATCCACCGGCTGTGGTGTTGGAATTGAGTGAAGGAAGTGATGAGTTCCGGTATGATGATCGGAGCACCGGAGAAGATGAAGCCGGATTTGAAAACGGACGGTACAATCCAATTTGGGCTGAAGCAGAAAATTCAGTTGAATCGTTCAGCAGGGGCAGCAGTGTAAGAAGAAGACCCAAGTCTCCCCCATTTTATCCTCAAAGAGTTGCACTTGATAATTTCATCACTGGCCACAAACCCTCATGGAGTCTGGGAGCAACGCCAAATGTAAATTCAGATTCTGAGCTGGAAGAATCTTCTTTAGAGGACCATTCTCTTGATTCTTCTTTGGATTCCGAAGCTGAAATTGAGGAAAACAACACAAGAATGGAATTATTTGATTCTAGGCAGAACCAAATCCAAAAGCTAAAGCAACCCATTTCCGCAGAATCAAGTCGTTCATCTCCAAATCCGCTCATGGCAGATTCTGAAAACCAATCAGGTGGTGGAAAATTTACACCTCCTAAGGACTTTGTGTGTCCCATAACTAGTACCCTTTTTGATGATCCAGTGACACTTGAGACTGGTCAGACATATGAGCGAAAAGCTATCCAAGAATGGCTTGATAGAGGAAACTCAACCTGCCCAATTACCCGCCAGAATTTGCAAAGCACCCAACTGCCTAAGACCAACTATGTCCTCAAACGTCTAATTGCAAGTTGGCAAGAACAGAACCCTGGTATAGCCTTCAGCCCATCTGATAATCCAAGCCCGCAGATTGAGCCAATGGTGAAACCCATAATGCCTTCAACTTCTCCTGTCAGTGTCATAAGCCAAGCTGCTATTGATAGTGCAGTCAGTGAGTTAAGAATTGCCATTACCAATCTTTGTATGTCAGAAATTCTCAAGGAGTCTGAAATGGCTGTTCTTCGTATTGAGCGTTTCTGGCAGGAAGCAAATGTGGAATGGGATATTCAGAATATGCTCTCAAAACCTCCGGTTATTAATGGTTTCGTGGAGGTTCTTTTCAATTCGGTCGATCCTAGAGTTCTAACAGCCACAGTTTTCCTCTTGTCTGAGCTGGGTTCAAGAGACAATGCTGTGATTCAGACACTAACCCAGGTTGACTCCGATGTGGAATGTATTGTGGCTCTTTTCAAAAAGGGGTTGATGGAGGCTGTTGTCTTGATATATCTGCTAAGGCATTGCATTCTTAATCTAGTAGAGATGGACCTGGTGGACTCTCTCTTAATGGTTATTAGAAAGAGAGATGATGATTGGGCTAATATGTGTCTAAAGCCTAAATCAGCTGCAGTGGTTTTACTGGGGCATATTGTTGGTGGCAGTGAATCAATCGCCAACGCTGTGACTTCTGAAAAAGCACTTGAAAGAATAATCAGCAGTTTGGAATCTGAATCAGCAGAAGAGAAGACTGCAGCGATTGGGATCTTATTAAGATGTATGCAACAGGATGGGTACTGCAGGAACACAATAGCTGATAAAGCTGAGTTGGCTCCTGTTTTGGATAGCTTCATGGCTGCAAAGGATGAAGAACGGTTTGAGATAGTTCTCTTTTTGTCCGAGTTAGTGAAATTAAACAGGAGGACATTCAATGAACAAATCCTGCATATCATAAAGGATGAGGGCCCTTTCAGTACAATGCACACCCTCCTTATTTATCTACAGACTGCTGCTCAAGACCATTGTCCTGTTGTGGCCAGTTTACTACTTCAACTTGATCTTCTGGCAGAGCCGAGAAAGATGAGCATATACCGTGAAGAGGCAATGGACACTCTCATCTCATGTCTCAGAAATATCGAGGTCCCTGCTGCCCAAATCGCTGCTGCTGAGACCATTATGTCACTGCAAGGGATGTTCACCACATCTGGAAAGCCTCTTGCTAGGGCCGTCCTTCTAAAACGTGCTGGCCTTGACAAAATTTATAAACAACGTGTGCGAATGGATCAACTTAGCAACTTTTCCGGAGAAGATGAAACTGTTGAGGAAGAAAAGGCGGCTGATAACTGGGAAAGAAAAATGGCATTTGTTTTAGCAAGCCACGAGTTTGGTCTACTTTTTGAGGCCTTGGCAGAAGGATTGAAGAGCAGAATCTCAGAATTATGTTCTGCGTGCTTTGTGTCAGCCACATGGCTCGTACACATGCTCAATACCCTTCCAGATACCGGAATACGAGGAGCAGCTCGGCTGTGCTTGATTAAACGGTTCATATCAATATTCAAGTCTGCCAAGGATACTGAAGACAAAGCACTTGCTTTGCTGGCGTTGGGCAGCTTCATCCGTGATCCTGAGGGAATGCAAGAATTAAATTCTTGCAGGAGGGATATCGTAAAAGGCCTGAGAGAGCTTAAGAGATACACTCCCTTGGCATTTCAAATGCTAAAAGTCTTTTCCGATGGGCAAGACTCTAGTGCCGAATTGTGGGATCATAAAGAATTAGTTCAAGTAGACTGCAGTGAGAACGGAGAGGTTCTTTCATTAGTTTGTTTCAAGGATAAAATATTTTCTGGCCATTCAGATGGAACTATAAAGGTGTGGACGGGTAAAGGTAGCATTCTCCATCTAATCCAGGAAATTCGAGAACATACAAAGGCAGTTACTAGCTTGGCAATTTTGCAATCAAAGGAGCTTCTATACAGTGGCTCACTAGATAGAACAACAAGGGTCTGGTCTATCAGCAATGAAGGAATCCAGTGTGCAGAAGTCCATGATATGAAGGATCAAGTTCATAATCTCGCCGTCACCAATAGTTTTTCATGCTTCATTCCACAAAGCAATGGTATCAAGGCTCACTCATGGAGCGGAGGATCCAAAATGTTAAATTCCAGCAAATCTGTAAAGTGCTTTGCTCTGGTAAATGGGAAAATATATTGTGGATGCCATGATAGCAGTGTTCAGGAGATTGATTTGGTCACAGGAACACTCAGTACCATTCAAACCGGCTCCCGGAAATTACTTGGGAAATCAAATCCTATCCATTGCATTCAGTATCACAGTGGAATGATATATGCAGCAGGTTCTTCGTTGGATGGAGCAGCAGTGAAGATTTGGAGTGCTGCAAACTTCAGTCTGGTTGGGTCTCTGTCAACTACACTAGAAGTGCGGGCTATGGCAGTAAGCTCGGAACTGATCTATTTGGGAGGTAAAGGAGGATGTGTGGAAATTTGGGATAGGGAGAAGCAGAACAAAATAATAGACACACTACAAACTGGTACAAACTGTAAGGTTCTTTCCTTGTCTATTGATCCCAATGAGGAAGTTTTGGTCACTGGAACATCTGATGGCCGAATCCAGGCATGGGGACTAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box WD40

Protein Analysis

1342

Amino Acids

148.38

Weight (kDa)

5.21

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_LIN PF23568 18 - 234 1.2e-19 E3 ubiquitin-protein ligase LIN-like, ARM repeat
U-box PF04564 407 - 477 5.1e-17 U-box domain
ARM_LIN_2nd PF23654 517 - 674 9.6e-60 E3 ubiquitin-protein ligase LIN-like, ARM repeat
ARM_LIN_C PF23628 683 - 1036 3e-144 Putative E3 ubiquitin-protein ligase LIN, ARM-like domain
Beta-prop_WDR5 PF25175 1036 - 1149 1.1e-07 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 1040 - 1146 3.8e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 1045 - 1163 4.8e-09 WDR3 first beta-propeller domain
Beta-prop_EML PF23409 1064 - 1155 2.1e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19 PF24814 1069 - 1160 1.2e-08 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 1069 - 1151 8.4e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 1070 - 1151 9.3e-08 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 1070 - 1134 1.3e-06 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 1157 - 1339 2.2e-07 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 1181 - 1339 9.9e-07 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 1192 - 1338 2.3e-06 THOC3 beta-propeller domain
WD40_Prp19 PF24814 1195 - 1335 8e-08 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2640
AasI GACNNNNNNGTC 1 cut(s) 2554
Acc36I ACCTGC 2 cut(s) 1346, 3719
AccBSI CCGCTC 4 cut(s) 330, 591, 1171, 3516
AccI GTMKAC 2 cut(s) 2767, 3162
AccII CGCG 1 cut(s) 158
AccIII TCCGGA 2 cut(s) 228, 2678
AcoI YGGCCR 4 cut(s) 946, 2412, 3223, 3997
AcuI CTGAAG 5 cut(s) 632, 858, 1429, 2973, 3763
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 8 cut(s) 458, 821, 1249, 2174, 2353, 2853, 3643, 3928
AflII CTTAAG 1 cut(s) 3062
AflIII ACRYGT 2 cut(s) 543, 2647
AhlI ACTAGT 2 cut(s) 26, 1244
AjnI CCWGG 6 cut(s) 215, 1432, 1815, 1929, 3282, 4005
AjuI GAANNNNNNNTTGG 4 cut(s) 269, 301, 973, 1005
Alw21I GWGCWC 3 cut(s) 93, 423, 785
Alw26I GTCTC 7 cut(s) 70, 903, 1271, 1782, 2507, 2540, 3798
AlwNI CAGNNNCTG 3 cut(s) 481, 998, 1184
Ama87I CYCGRG 1 cut(s) 356
Aor13HI TCCGGA 2 cut(s) 228, 2678
ApaI GGGCCC 2 cut(s) 276, 2345
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
AseI ATTAAT 1 cut(s) 1701
Asp700I GAANNNNTTC 1 cut(s) 3153
AsuC2I CCSGG 4 cut(s) 271, 388, 443, 3661
AsuHPI GGTGA 3 cut(s) 1498, 2566, 3448
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 4 cut(s) 231, 1024, 1927, 2518
AxyI CCTNAGG 2 cut(s) 1221, 3003
BaeGI GKGCMC 2 cut(s) 276, 2345
BalI TGGCCA 3 cut(s) 948, 2414, 3225
BamHI GGATCC 1 cut(s) 3521
BanII GRGCYC 4 cut(s) 93, 276, 423, 2345
BauI CACGAG 1 cut(s) 2756
BbsI GAAGAC 3 cut(s) 895, 2132, 2961
Bbv12I GWGCWC 3 cut(s) 93, 423, 785
BceAI ACGGC 8 cut(s) 69, 167, 209, 331, 469, 618, 2588, 3437
BcgI CGANNNNNNTGC 6 cut(s) 2504, 2538, 3717, 3751, 3816, 3850
BciT130I CCWGG 6 cut(s) 217, 1434, 1817, 1931, 3284, 4007
BciVI GTATCC 1 cut(s) 2941
BcnI CCSGG 4 cut(s) 271, 388, 443, 3661
BcoDI GTCTC 7 cut(s) 70, 903, 1271, 1782, 2507, 2540, 3798
BcuI ACTAGT 2 cut(s) 26, 1244
BfmI CTRYAG 5 cut(s) 2007, 2130, 2176, 2378, 3166
BfrI CTTAAG 1 cut(s) 3062
BfuAI ACCTGC 2 cut(s) 1346, 3719
BfuI GTATCC 1 cut(s) 2941
BglII AGATCT 1 cut(s) 360
Bme18I GGWCC 4 cut(s) 231, 1024, 1927, 2518
BmeT110I CYCGRG 1 cut(s) 356
BmrI ACTGGG 2 cut(s) 2030, 2731
BmsI GCATC 2 cut(s) 360, 3581
BmuI ACTGGG 2 cut(s) 2030, 2731
BoxI GACNNNNGTC 2 cut(s) 895, 2400
BpiI GAAGAC 3 cut(s) 895, 2132, 2961
BplI GAGNNNNNCTC 2 cut(s) 3058, 3090
BpmI CTGGAG 2 cut(s) 434, 641
Bpu10I CCTNAGC 1 cut(s) 1895
BpuEI CTTGAG 3 cut(s) 1295, 1586, 2376
BpuMI CCSGG 4 cut(s) 271, 388, 443, 3661
BsaBI GATNNNNATC 1 cut(s) 2141
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 2 cut(s) 2540, 3798
BsaJI CCNNGG 7 cut(s) 156, 183, 1432, 1815, 2781, 2943, 3078
BsaWI WCCGGW 7 cut(s) 228, 403, 765, 785, 1693, 2678, 2879
BsaXI ACNNNNNCTCC 8 cut(s) 92, 122, 696, 726, 3738, 3768, 3855, 3885
Bse118I RCCGGY 3 cut(s) 376, 724, 3653
Bse21I CCTNAGG 2 cut(s) 1221, 3003
Bse3DI GCAATG 5 cut(s) 1900, 2487, 3400, 3496, 3691
Bse8I GATNNNNATC 1 cut(s) 2141
BseAI TCCGGA 2 cut(s) 228, 2678
BseBI CCWGG 6 cut(s) 217, 1434, 1817, 1931, 3284, 4007
BseDI CCNNGG 7 cut(s) 156, 183, 1432, 1815, 2781, 2943, 3078
BseJI GATNNNNATC 1 cut(s) 2141
BseMI GCAATG 5 cut(s) 1900, 2487, 3400, 3496, 3691
BseMII CTCAG 9 cut(s) 990, 1764, 2193, 2518, 2535, 2823, 2994, 3044, 3652
BseSI GKGCMC 2 cut(s) 276, 2345
BseYI CCCAGC 1 cut(s) 1777
BsgI GTGCAG 2 cut(s) 1569, 3432
Bsh1236I CGCG 1 cut(s) 158
Bsh1285I CGRYCG 3 cut(s) 336, 473, 1734
BsiEI CGRYCG 3 cut(s) 336, 473, 1734
BsiHKAI GWGCWC 3 cut(s) 93, 423, 785
BsiHKCI CYCGRG 1 cut(s) 356
BslFI GGGAC 3 cut(s) 478, 1221, 2504
BsmAI GTCTC 7 cut(s) 70, 903, 1271, 1782, 2507, 2540, 3798
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 3 cut(s) 478, 1221, 2504
BsmI GAATGC 4 cut(s) 1905, 3015, 3267, 3696
Bso31I GGTCTC 2 cut(s) 2540, 3798
BsoBI CYCGRG 1 cut(s) 356
Bsp120I GGGCCC 2 cut(s) 272, 2341
Bsp1286I GDGCHC 5 cut(s) 93, 276, 423, 785, 2345
Bsp13I TCCGGA 2 cut(s) 228, 2678
BspCNI CTCAG 9 cut(s) 991, 1765, 2194, 2517, 2536, 2822, 2995, 3045, 3651
BspEI TCCGGA 2 cut(s) 228, 2678
BspFNI CGCG 1 cut(s) 158
BspMAI CTGCAG 4 cut(s) 2011, 2134, 2180, 3170
BspMI ACCTGC 2 cut(s) 1346, 3719
BspQI GCTCTTC 2 cut(s) 428, 2792
BspTI CTTAAG 1 cut(s) 3062
BspTNI GGTCTC 2 cut(s) 2540, 3798
BsrBI CCGCTC 4 cut(s) 330, 591, 1171, 3516
BsrDI GCAATG 5 cut(s) 1900, 2487, 3400, 3496, 3691
BsrFI RCCGGY 3 cut(s) 376, 724, 3653
BssAI RCCGGY 3 cut(s) 376, 724, 3653
BssECI CCNNGG 7 cut(s) 156, 183, 1432, 1815, 2781, 2943, 3078
BssNI GRCGYC 1 cut(s) 339
BssSI CACGAG 1 cut(s) 2756
BssT1I CCWWGG 3 cut(s) 2781, 2943, 3078
Bst2BI CACGAG 1 cut(s) 2756
Bst2UI CCWGG 6 cut(s) 217, 1434, 1817, 1931, 3284, 4007
Bst6I CTCTTC 6 cut(s) 110, 428, 703, 2115, 2469, 2792
BstACI GRCGYC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 3062
BstAPI GCANNNNNTGC 1 cut(s) 481
BstC8I GCNNGC 8 cut(s) 125, 378, 1469, 2623, 2752, 2827, 2976, 3819
BstDSI CCRYGG 2 cut(s) 156, 183
BstFNI CGCG 1 cut(s) 158
BstMAI GTCTC 7 cut(s) 70, 903, 1271, 1782, 2507, 2540, 3798
BstMCI CGRYCG 3 cut(s) 336, 473, 1734
BstNI CCWGG 6 cut(s) 217, 1434, 1817, 1931, 3284, 4007
BstNSI RCATGY 2 cut(s) 547, 2860
BstPAI GACNNNNGTC 2 cut(s) 895, 2400
BstSFI CTRYAG 5 cut(s) 2007, 2130, 2176, 2378, 3166
BstSLI GKGCMC 2 cut(s) 276, 2345
BstUI CGCG 1 cut(s) 158
BstV2I GAAGAC 3 cut(s) 895, 2132, 2961
BstX2I RGATCY 3 cut(s) 360, 2142, 3521
BstXI CCANNNNNNTGG 3 cut(s) 1199, 2762, 3233
BstYI RGATCY 3 cut(s) 360, 2142, 3521
Bsu36I CCTNAGG 2 cut(s) 1221, 3003
BsuI GTATCC 1 cut(s) 2941
BtgI CCRYGG 2 cut(s) 156, 183
BtgZI GCGATG 1 cut(s) 190
BtsI GCAGTG 7 cut(s) 883, 2016, 2047, 2558, 3175, 3610, 3759
BveI ACCTGC 2 cut(s) 1346, 3719
Cac8I GCNNGC 8 cut(s) 125, 378, 1469, 2623, 2752, 2827, 2976, 3819
CaiI CAGNNNCTG 3 cut(s) 481, 998, 1184
Cfr10I RCCGGY 3 cut(s) 376, 724, 3653
Cfr42I CCGCGG 1 cut(s) 159
CseI GACGC 1 cut(s) 347
CsiI ACCWGGT 1 cut(s) 1929
Csp6I GTAC 8 cut(s) 457, 820, 1248, 2173, 2352, 2852, 3642, 3927
CviQI GTAC 8 cut(s) 457, 820, 1248, 2173, 2352, 2852, 3642, 3927
DrdI GACNNNNNNGTC 1 cut(s) 2554
DseDI GACNNNNNNGTC 1 cut(s) 2554
EaeI YGGCCR 4 cut(s) 946, 2412, 3223, 3997
Eam1104I CTCTTC 6 cut(s) 110, 428, 703, 2115, 2469, 2792
EarI CTCTTC 6 cut(s) 110, 428, 703, 2115, 2469, 2792
EciI GGCGGA 2 cut(s) 83, 107
Ecl136II GAGCTC 2 cut(s) 91, 421
Eco130I CCWWGG 3 cut(s) 2781, 2943, 3078
Eco147I AGGCCT 2 cut(s) 2780, 3051
Eco24I GRGCYC 4 cut(s) 93, 276, 423, 2345
Eco31I GGTCTC 2 cut(s) 2540, 3798
Eco32I GATATC 1 cut(s) 3040
Eco47I GGWCC 4 cut(s) 231, 1024, 1927, 2518
Eco53kI GAGCTC 2 cut(s) 91, 421
Eco57I CTGAAG 5 cut(s) 632, 858, 1429, 2973, 3763
Eco81I CCTNAGG 2 cut(s) 1221, 3003
Eco88I CYCGRG 1 cut(s) 356
EcoICRI GAGCTC 2 cut(s) 91, 421
EcoO109I RGGNCCY 3 cut(s) 2341, 2342, 2518
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 6 cut(s) 215, 1432, 1815, 1929, 3282, 4005
EcoRV GATATC 1 cut(s) 3040
EcoT14I CCWWGG 3 cut(s) 2781, 2943, 3078
EcoT38I GRGCYC 4 cut(s) 93, 276, 423, 2345
ErhI CCWWGG 3 cut(s) 2781, 2943, 3078
Esp3I CGTCTC 1 cut(s) 70
FalI AAGNNNNNCTT 2 cut(s) 1302, 1334
FaqI GGGAC 3 cut(s) 478, 1221, 2504
FauI CCCGC 7 cut(s) 138, 556, 584, 598, 1358, 1476, 3810
FauNDI CATATG 1 cut(s) 1291
FblI GTMKAC 2 cut(s) 2767, 3162
FriOI GRGCYC 4 cut(s) 93, 276, 423, 2345
GsaI CCCAGC 1 cut(s) 1781
GsuI CTGGAG 2 cut(s) 434, 641
HgaI GACGC 1 cut(s) 347
Hin1I GRCGYC 1 cut(s) 339
HincII GTYRAC 2 cut(s) 1822, 3801
HindII GTYRAC 2 cut(s) 1822, 3801
HphI GGTGA 3 cut(s) 1498, 2566, 3448
Hpy99I CGWCG 7 cut(s) 341, 471, 490, 521, 524, 527, 530
HpyCH4IV ACGT 4 cut(s) 528, 1402, 2617, 2647
HpySE526I ACGT 4 cut(s) 528, 1402, 2617, 2647
Hsp92I GRCGYC 1 cut(s) 339
Kpn2I TCCGGA 2 cut(s) 228, 2678
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
KspI CCGCGG 1 cut(s) 159
LguI GCTCTTC 2 cut(s) 428, 2792
LweI GCATC 2 cut(s) 360, 3581
MabI ACCWGGT 1 cut(s) 1929
MaeII ACGT 4 cut(s) 528, 1402, 2617, 2647
MaeIII GTNAC 7 cut(s) 1267, 2062, 2556, 3310, 3454, 3625, 3979
MbiI CCGCTC 4 cut(s) 330, 591, 1171, 3516
MflI RGATCY 3 cut(s) 360, 2142, 3521
MhlI GDGCHC 5 cut(s) 93, 276, 423, 785, 2345
MlsI TGGCCA 3 cut(s) 948, 2414, 3225
MluNI TGGCCA 3 cut(s) 948, 2414, 3225
MlyI GAGTC 5 cut(s) 973, 1616, 1817, 1931, 3113
MmeI TCCRAC 2 cut(s) 717, 3720
Mox20I TGGCCA 3 cut(s) 948, 2414, 3225
MroI TCCGGA 2 cut(s) 228, 2678
MroNI GCCGGC 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 3153
MscI TGGCCA 3 cut(s) 948, 2414, 3225
MslI CAYNNNNRTG 4 cut(s) 11, 548, 1082, 3231
Msp20I TGGCCA 3 cut(s) 948, 2414, 3225
MspA1I CMGCKG 2 cut(s) 158, 2006
MspCI CTTAAG 1 cut(s) 3062
Mva1269I GAATGC 4 cut(s) 1905, 3015, 3267, 3696
MvaI CCWGG 6 cut(s) 217, 1434, 1817, 1931, 3284, 4007
MvnI CGCG 1 cut(s) 158
NaeI GCCGGC 1 cut(s) 378
NciI CCSGG 4 cut(s) 271, 388, 443, 3661
NdeI CATATG 1 cut(s) 1291
NgoMIV GCCGGC 1 cut(s) 376
NmeAIII GCCGAG 2 cut(s) 2475, 2878
NmuCI GTSAC 6 cut(s) 1267, 2062, 2556, 3454, 3625, 3979
NspI RCATGY 2 cut(s) 547, 2860
PaeR7I CTCGAG 1 cut(s) 356
PceI AGGCCT 2 cut(s) 2780, 3051
PciI ACATGT 1 cut(s) 543
PciSI GCTCTTC 2 cut(s) 428, 2792
PcsI WCGNNNNNNNCGW 5 cut(s) 207, 516, 522, 525, 1633
PctI GAATGC 4 cut(s) 1905, 3015, 3267, 3696
PdiI GCCGGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 3153
PfoI TCCNGGA 3 cut(s) 386, 3282, 3659
Ple19I CGATCG 2 cut(s) 336, 473
PleI GAGTC 5 cut(s) 972, 1615, 1817, 1931, 3113
PpsI GAGTC 5 cut(s) 972, 1615, 1817, 1931, 3113
PpuMI RGGWCCY 1 cut(s) 2518
PscI ACATGT 1 cut(s) 543
PshAI GACNNNNGTC 2 cut(s) 895, 2400
PshBI ATTAAT 1 cut(s) 1701
PsiI TTATAA 1 cut(s) 2640
Psp124BI GAGCTC 2 cut(s) 93, 423
Psp5II RGGWCCY 1 cut(s) 2518
Psp6I CCWGG 6 cut(s) 215, 1432, 1815, 1929, 3282, 4005
PspFI CCCAGC 1 cut(s) 1777
PspGI CCWGG 6 cut(s) 215, 1432, 1815, 1929, 3282, 4005
PspOMI GGGCCC 2 cut(s) 272, 2341
PspPPI RGGWCCY 1 cut(s) 2518
PsrI GAACNNNNNNTAC 2 cut(s) 3625, 3657
PstI CTGCAG 4 cut(s) 2011, 2134, 2180, 3170
PstNI CAGNNNCTG 3 cut(s) 481, 998, 1184
PsuI RGATCY 3 cut(s) 360, 2142, 3521
PvuI CGATCG 2 cut(s) 336, 473
PvuII CAGCTG 1 cut(s) 2006
RsaI GTAC 8 cut(s) 458, 821, 1249, 2174, 2353, 2853, 3643, 3928
RsaNI GTAC 8 cut(s) 457, 820, 1248, 2173, 2352, 2852, 3642, 3927
RseI CAYNNNNRTG 4 cut(s) 11, 548, 1082, 3231
SacI GAGCTC 2 cut(s) 93, 423
SacII CCGCGG 1 cut(s) 159
SapI GCTCTTC 2 cut(s) 428, 2792
SchI GAGTC 5 cut(s) 973, 1616, 1817, 1931, 3113
SduI GDGCHC 5 cut(s) 93, 276, 423, 785, 2345
SexAI ACCWGGT 1 cut(s) 1929
SfaNI GCATC 2 cut(s) 360, 3581
SfcI CTRYAG 5 cut(s) 2007, 2130, 2176, 2378, 3166
Sfr274I CTCGAG 1 cut(s) 356
Sfr303I CCGCGG 1 cut(s) 159
SgrBI CCGCGG 1 cut(s) 159
SinI GGWCC 4 cut(s) 231, 1024, 1927, 2518
SlaI CTCGAG 1 cut(s) 356
SmiMI CAYNNNNRTG 4 cut(s) 11, 548, 1082, 3231
SmlI CTYRAG 5 cut(s) 356, 1274, 1601, 2391, 3062
SmoI CTYRAG 5 cut(s) 356, 1274, 1601, 2391, 3062
SpeI ACTAGT 2 cut(s) 26, 1244
SseBI AGGCCT 2 cut(s) 2780, 3051
SspI AATATT 2 cut(s) 2931, 3216
SstI GAGCTC 2 cut(s) 93, 423
StuI AGGCCT 2 cut(s) 2780, 3051
StyI CCWWGG 3 cut(s) 2781, 2943, 3078
TaiI ACGT 4 cut(s) 531, 1405, 2620, 2650
TaqI TCGA 9 cut(s) 332, 336, 357, 414, 569, 581, 1734, 2514, 3292
TaqII GACCGA 1 cut(s) 1720
TatI WGTACW 1 cut(s) 2351
TauI GCSGC 8 cut(s) 59, 99, 123, 161, 327, 330, 344, 2714
TseFI GTSAC 6 cut(s) 1267, 2062, 2556, 3454, 3625, 3979
Tsp45I GTSAC 6 cut(s) 1267, 2062, 2556, 3454, 3625, 3979
TspGWI ACGGA 4 cut(s) 407, 828, 2984, 3192
Vha464I CTTAAG 1 cut(s) 3062
VpaK11BI GGWCC 4 cut(s) 231, 1024, 1927, 2518
VspI ATTAAT 1 cut(s) 1701
XceI RCATGY 2 cut(s) 547, 2860
XcmI CCANNNNNNNNNTGG 1 cut(s) 1199
XhoI CTCGAG 1 cut(s) 356
XmiI GTMKAC 2 cut(s) 2767, 3162
XmnI GAANNNNTTC 1 cut(s) 3153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.