Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033272.1

Orthogroup ID

OG0001838

Physical Location & Seq

Genomic Coordinates Reverse (-)

600 .. 973

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033272.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 301 bp

cggttcatcagttgatgcaacagctgggaagatattttcgcttccaaacaaggcggtattaggatcattctcaactggattcgacatccaacgcattgccaccaacaatgacttgatctttacggcaacaaagtgcgggataattgaggtttggttgaaagagaggttcacaagaattgcttccatcaaaacagctggcggcggtcatgccaagataacttcgttggcggcagatatggacggaggattgctgtttgcaggttcctctgatggcagaatccaggtttgggcactagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

99

Amino Acids

10.36

Weight (kDa)

8.13

Isoelectric Point (pI)

16.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380
malus_domestica	MD02G1056600.v1.1 MD15G1011400.v1.1 MD15G1191200.v1.1
prunus_persica	Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.7G226000_v2.0.a1 Prupe.7G226000_v2.0.a1
pyrus_communis	pycom02g04580 pycom02g04590 pycom15g17120
rosa_chinensis	RchiOBHm_Chr2g0091211 RchiOBHm_Chr6g0302931 RchiOBHm_Chr6g0302941
rosa_laevigata	RLG00000011123 RLG00000016192
rosa_multiflora	Rmu_sc0002270.1_g000015 Rmu_sc0033272.1_g000001 Rmu_ssc0000460.1_g000018
rosa_roxburghii	Rroxscaffold_2G00150380 Rroxscaffold_7G00165160
rosa_rugosa	Rorug02G0014500 Rorug06G0318200 Rorug06G0318300 Rorug06G0318300
rosa_samantha	Rh2AG060300 Rh2BG059000 Rh2CG060800 Rh2DG059600 Rh6AG431800 Rh6BG470800 Rh6CG444200 Rh6DG431000
rosa_wichuraiana	Rw2G004960 Rw6G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	249
AciI	CCGC	5 cut(s)	54, 136, 199, 202, 228
AclWI	GGATC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	2 cut(s)	24, 195
AluI	AGCT	2 cut(s)	24, 195
AlwI	GGATC	1 cut(s)	71
Asp700I	GAANNNNTTC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	293
BccI	CCATC	2 cut(s)	192, 264
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	282
BfaI	CTAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	249
BisI	GCNGC	2 cut(s)	200, 229
BlsI	GCNGC	2 cut(s)	201, 230
Bme1390I	CCNGG	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	63, 115
BspACI	CCGC	5 cut(s)	54, 136, 199, 202, 228
BspLI	GGNNCC	1 cut(s)	263
BspMI	ACCTGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	80
BssMI	GATC	2 cut(s)	63, 115
Bst2UI	CCWGG	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	66, 118
BstMBI	GATC	2 cut(s)	63, 115
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	85
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	197
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	2 cut(s)	24, 195
CviKI_1	RGCY	2 cut(s)	24, 195
DpnI	GATC	2 cut(s)	65, 117
DpnII	GATC	2 cut(s)	63, 115
EcoRII	CCWGG	1 cut(s)	280
FaeI	CATG	1 cut(s)	210
FaiI	YATR	2 cut(s)	208, 237
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	1 cut(s)	206
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	200, 229
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	200, 229
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	2 cut(s)	200, 229
GsaI	CCCAGC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	210
HinfI	GANTC	2 cut(s)	79, 277
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	18, 258
Hsp92II	CATG	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	63, 115
LpnPI	CCDG	6 cut(s)	10, 61, 181, 244, 267, 294
LweI	GCATC	1 cut(s)	5
MaeI	CTAG	1 cut(s)	294
MalI	GATC	2 cut(s)	65, 117
MboI	GATC	2 cut(s)	63, 115
MboII	GAAGA	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	2 cut(s)	142, 175
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	4 cut(s)	140, 157, 237, 275
MroXI	GAANNNNTTC	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	24, 195
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	63, 115
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	79, 277
PkrI	GCNGC	2 cut(s)	201, 230
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	263
PvuII	CAGCTG	2 cut(s)	24, 195
SatI	GCNGC	2 cut(s)	200, 229
Sau3AI	GATC	2 cut(s)	63, 115
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	6 cut(s)	26, 151, 168, 197, 263, 286
SfaNI	GCATC	1 cut(s)	5
Sse9I	AATT	2 cut(s)	142, 175
SsiI	CCGC	5 cut(s)	54, 136, 199, 202, 228
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	280
TaqI	TCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	142, 175
TauI	GCSGC	2 cut(s)	202, 231
TfiI	GAWTC	2 cut(s)	79, 277
TspGWI	ACGGA	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.