Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001838

Physical Location & Seq

Genomic Coordinates Reverse (-)

2986159 .. 2988006

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04580.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGAGGCTGTGGTGTTGATATACCTGTTGAGGCATTCGAGCCTGAACCTAATTGAGATGGATATGGTGGAGTCTCTCTTACTAGTTATCAAAAGGAAAGACAATGATTTGCTTAACATGTGTCTAAGGCCGAGAACAGCTGCAGTGGTTTTACTCGGGCTGATTCTTGGTGACAGTGGAGAGGGCATTGCCTCTTCGATTGTTAACACAATAGTATCTGAAAAAGCGCTTGAAATAATTATTAGCAGTTTGGAATCTGAATCGACCGAAGAGAGGATTGCAGCAGTTAGGATCTTGTTGAGATGTATGCAGCAAGATGGAAAGTGCAGGAACATAATAGCTGATAAAGGTGAGGTGGCTCCTGTTTTGGATAGCTTTGTCGGCGCAAGTGATGGAGAAAAATTTGAGATAGTTCACTTTTTCTTCGAGTTAGTTAAATTAAACAGAAGGACATCTAATGAACAAATCCTGCATATCATAAAGGATGAAGGCCTGCTCAGCACAATGCACACCCTTCTTATTTATCTGCAGACGGCCCCTCAAGATCGGTGTCCTACTGTGGCTGGTCTACTACTTCAACTCGATCTTCTGGCAGAGCCGAGAAAGATGAGCATATACCGTGAAGAGGCAATAGACACACTCATCTCATGTCTCAGAAATGCGGACTTCCCTAATGCCCAAATTGCTGCTGCTGAGACAATTATGTCGCTGCAAGGGAGGTTTTCCACATCTGGAAAGCCTCTCACCAGAGCTTTCCTTCTCAAGCGTGCCGGCCTTGACAAAAGTTACAAAAGTCGCGTACGAATGGATCAACTTAGCAATTTTTCTGGAGACGACGAAACTCTTGAAGAGGAGGCGGCTGATAATTGGGAAAGAAAAATGGCATTTGCTTTAGCAAGCCATGAGTTAGGTCTACTTTTCGAGGCTTTAGCAGAAGGCTTGAAGAGCAGATACGCAGAATTATGTTCAGCGTGCTTCATATCAGCCACATGGCTCGTATACATGCTCAATGTTCTTCCAGACACAGGAATACGTGGAACAGCGCGGCTCTTCTTGCTCAAACGTTATGTGTCGATATTCAAATCTGCCAAGGATACTGATGACAAAGCTCTCTCTATGCTTGGGTTGAGCAGCTTCATCCAAGATCCTGAAGGCATGCAGGGGGTAACTTCTAGCATAAATGATATAGTGAAGGGCCTAAAAGAGCTTAAGAGATTGACTCCCTTGGCATTTCAAATGCTAAAACTCTTCTCTGAGGGACAAGACTCTAGCACCGTAAGTTCATCGGAATCTTGTGTAATATACCTTTGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

439

Amino Acids

48.58

Weight (kDa)

5.27

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380
malus_domestica	MD02G1056600.v1.1 MD15G1011400.v1.1 MD15G1191200.v1.1
prunus_persica	Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.7G226000_v2.0.a1 Prupe.7G226000_v2.0.a1
pyrus_communis	pycom02g04580 pycom02g04590 pycom15g17120
rosa_chinensis	RchiOBHm_Chr2g0091211 RchiOBHm_Chr6g0302931 RchiOBHm_Chr6g0302941
rosa_laevigata	RLG00000011123 RLG00000016192
rosa_multiflora	Rmu_sc0002270.1_g000015 Rmu_sc0033272.1_g000001 Rmu_ssc0000460.1_g000018
rosa_roxburghii	Rroxscaffold_2G00150380 Rroxscaffold_7G00165160
rosa_rugosa	Rorug02G0014500 Rorug06G0318200 Rorug06G0318300 Rorug06G0318300
rosa_samantha	Rh2AG060300 Rh2BG059000 Rh2CG060800 Rh2DG059600 Rh6AG431800 Rh6BG470800 Rh6CG444200 Rh6DG431000
rosa_wichuraiana	Rw2G004960 Rw6G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	703
AccI	GTMKAC	3 cut(s)	568, 913, 999
AccII	CGCG	2 cut(s)	798, 1045
AciI	CCGC	3 cut(s)	662, 857, 1045
AclI	AACGTT	1 cut(s)	1063
AclWI	GGATC	3 cut(s)	299, 816, 1139
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	1170
AfaI	GTAC	1 cut(s)	801
AfeI	AGCGCT	1 cut(s)	228
AfiI	CCNNNNNNNGG	3 cut(s)	273, 625, 1025
AflII	CTTAAG	1 cut(s)	1208
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	6 cut(s)	233, 578, 848, 943, 1081, 1235
AhlI	ACTAGT	1 cut(s)	82
AluBI	AGCT	7 cut(s)	140, 341, 375, 752, 1109, 1134, 1207
AluI	AGCT	7 cut(s)	140, 341, 375, 752, 1109, 1134, 1207
Alw26I	GTCTC	4 cut(s)	78, 656, 689, 825
AlwI	GGATC	3 cut(s)	299, 816, 1139
Ama87I	CYCGRG	1 cut(s)	155
Aor51HI	AGCGCT	1 cut(s)	228
AoxI	GGCC	5 cut(s)	128, 490, 534, 772, 1195
ApeKI	GCWGC	7 cut(s)	140, 281, 310, 686, 689, 709, 1131
ApoI	RAATTY	1 cut(s)	401
AspLEI	GCGC	3 cut(s)	229, 386, 1045
AspS9I	GGNCC	2 cut(s)	535, 1195
AsuHPI	GGTGA	3 cut(s)	182, 362, 736
AvaI	CYCGRG	1 cut(s)	155
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BarI	GAAGNNNNNNTAC	2 cut(s)	935, 967
BbvI	GCAGC	7 cut(s)	127, 293, 322, 673, 676, 696, 1143
BccI	CCATC	3 cut(s)	52, 311, 386
BceAI	ACGGC	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	1087
BcoDI	GTCTC	4 cut(s)	78, 656, 689, 825
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	3 cut(s)	83, 1173, 1269
BfmI	CTRYAG	2 cut(s)	141, 527
BfoI	RGCGCY	1 cut(s)	230
BfrI	CTTAAG	1 cut(s)	1208
BfuI	GTATCC	1 cut(s)	1087
BisI	GCNGC	9 cut(s)	141, 282, 311, 687, 690, 710, 858, 1046, 1132
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	9 cut(s)	142, 283, 312, 688, 691, 711, 859, 1047, 1133
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	535, 1195
BmiI	GGNNCC	2 cut(s)	360, 537
BplI	GAGNNNNNCTC	2 cut(s)	1204, 1236
BpmI	CTGGAG	1 cut(s)	849
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	2 cut(s)	525, 746
BsaAI	YACGTR	1 cut(s)	1034
BsaJI	CCNNGG	2 cut(s)	1089, 1224
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 625, 1025
Bse118I	RCCGGY	1 cut(s)	770
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	1089, 1224
BseGI	GGATG	2 cut(s)	490, 1137
BseLI	CCNNNNNNNGG	3 cut(s)	273, 625, 1025
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	4 cut(s)	511, 667, 684, 1245
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	7 cut(s)	127, 293, 322, 673, 676, 696, 1143
BsgI	GTGCAG	1 cut(s)	346
Bsh1236I	CGCG	2 cut(s)	798, 1045
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	5 cut(s)	130, 492, 536, 774, 1197
BsiEI	CGRYCG	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	771
BsiWI	CGTACG	1 cut(s)	799
BslFI	GGGAC	1 cut(s)	1272
BslI	CCNNNNNNNGG	3 cut(s)	273, 625, 1025
BsmAI	GTCTC	4 cut(s)	78, 656, 689, 825
BsmBI	CGTCTC	1 cut(s)	825
BsmFI	GGGAC	1 cut(s)	1272
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	5 cut(s)	130, 492, 536, 774, 1197
BsoBI	CYCGRG	1 cut(s)	155
Bsp143I	GATC	5 cut(s)	291, 544, 583, 808, 1144
Bsp1720I	GCTNAGC	1 cut(s)	497
BspACI	CCGC	3 cut(s)	662, 857, 1045
BspANI	GGCC	5 cut(s)	130, 492, 536, 774, 1197
BspCNI	CTCAG	4 cut(s)	510, 666, 685, 1246
BspFNI	CGCG	2 cut(s)	798, 1045
BspLI	GGNNCC	2 cut(s)	360, 537
BspMAI	CTGCAG	2 cut(s)	145, 531
BspPI	GGATC	3 cut(s)	299, 816, 1139
BspQI	GCTCTTC	2 cut(s)	938, 1055
BspTI	CTTAAG	1 cut(s)	1208
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	770
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	2 cut(s)	1089, 1224
BssMI	GATC	5 cut(s)	291, 544, 583, 808, 1144
BssNAI	GTATAC	1 cut(s)	1000
BssT1I	CCWWGG	2 cut(s)	1089, 1224
Bst1107I	GTATAC	1 cut(s)	1000
Bst4CI	ACNGT	4 cut(s)	176, 559, 620, 1276
Bst6I	CTCTTC	7 cut(s)	199, 264, 618, 843, 938, 1055, 1253
BstAFI	CTTAAG	1 cut(s)	1208
BstBAI	YACGTR	1 cut(s)	1034
BstC8I	GCNNGC	6 cut(s)	494, 768, 772, 898, 973, 1157
BstDEI	CTNAG	6 cut(s)	125, 497, 653, 693, 815, 1254
BstF5I	GGATG	2 cut(s)	490, 1137
BstFNI	CGCG	2 cut(s)	798, 1045
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	3 cut(s)	229, 386, 1045
BstKTI	GATC	5 cut(s)	294, 547, 586, 811, 1147
BstMAI	GTCTC	4 cut(s)	78, 656, 689, 825
BstMBI	GATC	5 cut(s)	291, 544, 583, 808, 1144
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	5 cut(s)	381, 498, 683, 945, 1054
BstNSI	RCATGY	3 cut(s)	121, 1006, 1159
BstSFI	CTRYAG	2 cut(s)	141, 527
BstUI	CGCG	2 cut(s)	798, 1045
BstV1I	GCAGC	7 cut(s)	127, 293, 322, 673, 676, 696, 1143
BstX2I	RGATCY	2 cut(s)	291, 1144
BstYI	RGATCY	2 cut(s)	291, 1144
BstZ17I	GTATAC	1 cut(s)	1000
BsuI	GTATCC	1 cut(s)	1087
BsuRI	GGCC	5 cut(s)	130, 492, 536, 774, 1197
BtsCI	GGATG	2 cut(s)	490, 1137
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 181
Cac8I	GCNNGC	6 cut(s)	494, 768, 772, 898, 973, 1157
CfoI	GCGC	3 cut(s)	229, 386, 1045
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	2 cut(s)	535, 1195
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	6 cut(s)	118, 648, 902, 990, 1003, 1156
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	6 cut(s)	125, 497, 653, 693, 815, 1254
DpnI	GATC	5 cut(s)	293, 546, 585, 810, 1146
DpnII	GATC	5 cut(s)	291, 544, 583, 808, 1144
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	7 cut(s)	199, 264, 618, 843, 938, 1055, 1253
EarI	CTCTTC	7 cut(s)	199, 264, 618, 843, 938, 1055, 1253
Eco130I	CCWWGG	2 cut(s)	1089, 1224
Eco147I	AGGCCT	1 cut(s)	492
Eco47III	AGCGCT	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	1170
Eco88I	CYCGRG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	1195
EcoT14I	CCWWGG	2 cut(s)	1089, 1224
ErhI	CCWWGG	2 cut(s)	1089, 1224
Esp3I	CGTCTC	1 cut(s)	825
FaeI	CATG	6 cut(s)	121, 651, 905, 993, 1006, 1159
FaqI	GGGAC	1 cut(s)	1272
FatI	CATG	6 cut(s)	117, 647, 901, 989, 1002, 1155
FblI	GTMKAC	3 cut(s)	568, 913, 999
Fnu4HI	GCNGC	9 cut(s)	141, 282, 311, 687, 690, 710, 858, 1046, 1132
FokI	GGATG	2 cut(s)	497, 1124
Fsp4HI	GCNGC	9 cut(s)	141, 282, 311, 687, 690, 710, 858, 1046, 1132
FspBI	CTAG	3 cut(s)	83, 1173, 1269
GlaI	GCGC	3 cut(s)	228, 385, 1044
GluI	GCNGC	9 cut(s)	141, 282, 311, 687, 690, 710, 858, 1046, 1132
GsuI	CTGGAG	1 cut(s)	849
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	5 cut(s)	130, 492, 536, 774, 1197
HapII	CCGG	1 cut(s)	771
HhaI	GCGC	3 cut(s)	229, 386, 1045
Hin1II	CATG	6 cut(s)	121, 651, 905, 993, 1006, 1159
Hin6I	GCGC	3 cut(s)	227, 384, 1043
HinP1I	GCGC	3 cut(s)	227, 384, 1043
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	7 cut(s)	71, 163, 254, 260, 1219, 1265, 1289
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	3 cut(s)	182, 362, 736
Hpy166II	GTNNAC	5 cut(s)	205, 415, 569, 914, 1000
Hpy188I	TCNGA	5 cut(s)	220, 259, 656, 1255, 1288
Hpy188III	TCNNGA	7 cut(s)	542, 732, 828, 845, 1019, 1148, 1314
Hpy8I	GTNNAC	5 cut(s)	205, 415, 569, 914, 1000
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	7 cut(s)	441, 482, 524, 767, 929, 1145, 1186
HpyCH4III	ACNGT	4 cut(s)	176, 559, 620, 1276
HpyCH4IV	ACGT	2 cut(s)	1033, 1063
HpyCH4V	TGCA	9 cut(s)	143, 281, 310, 327, 472, 508, 529, 712, 1159
HpyF10VI	GCNNNNNNNGC	5 cut(s)	381, 498, 683, 945, 1054
HpyF3I	CTNAG	6 cut(s)	125, 497, 653, 693, 815, 1254
HpySE526I	ACGT	2 cut(s)	1033, 1063
Hsp92II	CATG	6 cut(s)	121, 651, 905, 993, 1006, 1159
HspAI	GCGC	3 cut(s)	227, 384, 1043
KroI	GCCGGC	1 cut(s)	770
KroNI	GCCGGC	1 cut(s)	772
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	291, 544, 583, 808, 1144
LguI	GCTCTTC	2 cut(s)	938, 1055
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	7 cut(s)	127, 293, 322, 673, 676, 696, 1143
MaeI	CTAG	3 cut(s)	83, 1173, 1269
MaeII	ACGT	2 cut(s)	1033, 1063
MaeIII	GTNAC	3 cut(s)	170, 785, 1165
MalI	GATC	5 cut(s)	293, 546, 585, 810, 1146
MboI	GATC	5 cut(s)	291, 544, 583, 808, 1144
MflI	RGATCY	2 cut(s)	291, 1144
MluCI	AATT	9 cut(s)	51, 237, 401, 437, 681, 699, 820, 865, 959
MlyI	GAGTC	3 cut(s)	80, 1213, 1259
MroNI	GCCGGC	1 cut(s)	770
MseI	TTAA	5 cut(s)	114, 204, 435, 440, 1209
MspA1I	CMGCKG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	1208
MspI	CCGG	1 cut(s)	771
Mva1269I	GAATGC	1 cut(s)	34
MvnI	CGCG	2 cut(s)	798, 1045
MwoI	GCNNNNNNNGC	5 cut(s)	381, 498, 683, 945, 1054
NaeI	GCCGGC	1 cut(s)	772
NdeII	GATC	5 cut(s)	291, 544, 583, 808, 1144
NgoMIV	GCCGGC	1 cut(s)	770
NlaIII	CATG	6 cut(s)	121, 651, 905, 993, 1006, 1159
NlaIV	GGNNCC	2 cut(s)	360, 537
NmeAIII	GCCGAG	2 cut(s)	156, 624
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	3 cut(s)	121, 1006, 1159
PaeI	GCATGC	1 cut(s)	1159
PceI	AGGCCT	1 cut(s)	492
PciI	ACATGT	1 cut(s)	117
PciSI	GCTCTTC	2 cut(s)	938, 1055
PctI	GAATGC	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	772
PfeI	GAWTC	4 cut(s)	163, 254, 260, 1289
Pfl23II	CGTACG	1 cut(s)	799
PkrI	GCNGC	9 cut(s)	142, 283, 312, 688, 691, 711, 859, 1047, 1133
PleI	GAGTC	3 cut(s)	79, 1213, 1259
PpsI	GAGTC	3 cut(s)	79, 1213, 1259
Ppu21I	YACGTR	1 cut(s)	1034
PscI	ACATGT	1 cut(s)	117
Psp1406I	AACGTT	1 cut(s)	1063
PspLI	CGTACG	1 cut(s)	799
PspN4I	GGNNCC	2 cut(s)	360, 537
PspPI	GGNCC	2 cut(s)	535, 1195
PstI	CTGCAG	2 cut(s)	145, 531
PsuI	RGATCY	2 cut(s)	291, 1144
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
SapI	GCTCTTC	2 cut(s)	938, 1055
SaqAI	TTAA	5 cut(s)	114, 204, 435, 440, 1209
SatI	GCNGC	9 cut(s)	141, 282, 311, 687, 690, 710, 858, 1046, 1132
Sau3AI	GATC	5 cut(s)	291, 544, 583, 808, 1144
Sau96I	GGNCC	2 cut(s)	535, 1195
SchI	GAGTC	3 cut(s)	80, 1213, 1259
SfcI	CTRYAG	2 cut(s)	141, 527
SmlI	CTYRAG	3 cut(s)	540, 761, 1208
SmoI	CTYRAG	3 cut(s)	540, 761, 1208
SpeI	ACTAGT	1 cut(s)	82
SphI	GCATGC	1 cut(s)	1159
Sse9I	AATT	9 cut(s)	51, 237, 401, 437, 681, 699, 820, 865, 959
SseBI	AGGCCT	1 cut(s)	492
SsiI	CCGC	3 cut(s)	662, 857, 1045
SspMI	CTAG	3 cut(s)	83, 1173, 1269
StuI	AGGCCT	1 cut(s)	492
StyI	CCWWGG	2 cut(s)	1089, 1224
TaaI	ACNGT	4 cut(s)	176, 559, 620, 1276
TaiI	ACGT	2 cut(s)	1036, 1066
TaqI	TCGA	7 cut(s)	38, 197, 263, 426, 582, 921, 1073
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	9 cut(s)	51, 237, 401, 437, 681, 699, 820, 865, 959
TauI	GCSGC	2 cut(s)	860, 1048
TfiI	GAWTC	4 cut(s)	163, 254, 260, 1289
Tru1I	TTAA	5 cut(s)	114, 204, 435, 440, 1209
Tru9I	TTAA	5 cut(s)	114, 204, 435, 440, 1209
TscAI	CASTG	2 cut(s)	150, 181
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	7 cut(s)	140, 281, 310, 686, 689, 709, 1131
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	5 cut(s)	474, 501, 967, 1126, 1272
TspRI	CASTG	2 cut(s)	150, 181
Vha464I	CTTAAG	1 cut(s)	1208
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	3 cut(s)	121, 1006, 1159
XmiI	GTMKAC	3 cut(s)	568, 913, 999
XspI	CTAG	3 cut(s)	83, 1173, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.