RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 |
| malus_domestica | MD02G1056600.v1.1 MD15G1011400.v1.1 MD15G1191200.v1.1 |
| prunus_persica | Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.7G226000_v2.0.a1 Prupe.7G226000_v2.0.a1 |
| pyrus_communis | pycom02g04580 pycom02g04590 pycom15g17120 |
| rosa_chinensis | RchiOBHm_Chr2g0091211 RchiOBHm_Chr6g0302931 RchiOBHm_Chr6g0302941 |
| rosa_laevigata | RLG00000011123 RLG00000016192 |
| rosa_multiflora | Rmu_sc0002270.1_g000015 Rmu_sc0033272.1_g000001 Rmu_ssc0000460.1_g000018 |
| rosa_roxburghii | Rroxscaffold_2G00150380 Rroxscaffold_7G00165160 |
| rosa_rugosa | Rorug02G0014500 Rorug06G0318200 Rorug06G0318300 Rorug06G0318300 |
| rosa_samantha | Rh2AG060300 Rh2BG059000 Rh2CG060800 Rh2DG059600 Rh6AG431800 Rh6BG470800 Rh6CG444200 Rh6DG431000 |
| rosa_wichuraiana | Rw2G004960 Rw6G037430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2646 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 356, 2560 |
| Acc36I | ACCTGC | 2 cut(s) | 1352, 3725 |
| AccBSI | CCGCTC | 3 cut(s) | 606, 1177, 3522 |
| AccI | GTMKAC | 3 cut(s) | 2425, 2773, 3168 |
| AccII | CGCG | 2 cut(s) | 170, 197 |
| AccIII | TCCGGA | 2 cut(s) | 240, 2588 |
| AcoI | YGGCCR | 4 cut(s) | 2418, 3229, 3456, 4003 |
| AcuI | CTGAAG | 5 cut(s) | 647, 873, 1435, 2979, 3769 |
| AcyI | GRCGYC | 1 cut(s) | 351 |
| AfaI | GTAC | 6 cut(s) | 470, 836, 1255, 2359, 2859, 3649 |
| AflII | CTTAAG | 1 cut(s) | 3068 |
| AflIII | ACRYGT | 2 cut(s) | 558, 2653 |
| AhlI | ACTAGT | 2 cut(s) | 38, 1250 |
| AjnI | CCWGG | 5 cut(s) | 1438, 1821, 1935, 3288, 4011 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 281, 313, 979, 1011 |
| Alw21I | GWGCWC | 3 cut(s) | 105, 435, 800 |
| Alw26I | GTCTC | 8 cut(s) | 82, 504, 921, 1277, 1788, 2513, 2546, 3804 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 493, 1004, 1190 |
| Ama87I | CYCGRG | 1 cut(s) | 368 |
| Aor13HI | TCCGGA | 2 cut(s) | 240, 2588 |
| ApaI | GGGCCC | 2 cut(s) | 288, 2351 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 578, 610 |
| AseI | ATTAAT | 1 cut(s) | 1707 |
| AsiSI | GCGATCGC | 1 cut(s) | 485 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3159 |
| AspLEI | GCGC | 2 cut(s) | 233, 394 |
| AspS9I | GGNCC | 8 cut(s) | 243, 284, 285, 1030, 1933, 2347, 2348, 2524 |
| AsuC2I | CCSGG | 4 cut(s) | 283, 400, 455, 3667 |
| AsuHPI | GGTGA | 3 cut(s) | 1504, 2572, 3454 |
| AvaI | CYCGRG | 1 cut(s) | 368 |
| AvaII | GGWCC | 2 cut(s) | 243, 1933 |
| AxyI | CCTNAGG | 2 cut(s) | 1227, 3009 |
| BaeGI | GKGCMC | 3 cut(s) | 288, 2181, 2351 |
| BalI | TGGCCA | 2 cut(s) | 2420, 3231 |
| BamHI | GGATCC | 1 cut(s) | 3527 |
| BanII | GRGCYC | 5 cut(s) | 105, 158, 288, 435, 2351 |
| BauI | CACGAG | 1 cut(s) | 2762 |
| BbsI | GAAGAC | 2 cut(s) | 913, 2967 |
| Bbv12I | GWGCWC | 3 cut(s) | 105, 435, 800 |
| BceAI | ACGGC | 8 cut(s) | 81, 221, 341, 343, 481, 633, 1919, 3443 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3723, 3757, 3822, 3856 |
| BciT130I | CCWGG | 5 cut(s) | 1440, 1823, 1937, 3290, 4013 |
| BciVI | GTATCC | 1 cut(s) | 2947 |
| BcnI | CCSGG | 4 cut(s) | 283, 400, 455, 3667 |
| BcoDI | GTCTC | 8 cut(s) | 82, 504, 921, 1277, 1788, 2513, 2546, 3804 |
| BcuI | ACTAGT | 2 cut(s) | 38, 1250 |
| BfmI | CTRYAG | 6 cut(s) | 1761, 2013, 2136, 2182, 2384, 3172 |
| BfoI | RGCGCY | 1 cut(s) | 395 |
| BfrI | CTTAAG | 1 cut(s) | 3068 |
| BfuAI | ACCTGC | 2 cut(s) | 1352, 3725 |
| BfuI | GTATCC | 1 cut(s) | 2947 |
| BglII | AGATCT | 1 cut(s) | 372 |
| Bme1390I | CCNGG | 9 cut(s) | 283, 400, 455, 1440, 1823, 1937, 3290, 3667, 4013 |
| Bme18I | GGWCC | 2 cut(s) | 243, 1933 |
| BmeT110I | CYCGRG | 1 cut(s) | 368 |
| BmgT120I | GGNCC | 8 cut(s) | 243, 284, 285, 1030, 1933, 2347, 2348, 2524 |
| BmrFI | CCNGG | 9 cut(s) | 283, 400, 455, 1440, 1823, 1937, 3290, 3667, 4013 |
| BmrI | ACTGGG | 2 cut(s) | 2036, 2737 |
| BmsI | GCATC | 3 cut(s) | 372, 3006, 3587 |
| BmuI | ACTGGG | 2 cut(s) | 2036, 2737 |
| BoxI | GACNNNNGTC | 2 cut(s) | 913, 2406 |
| BpiI | GAAGAC | 2 cut(s) | 913, 2967 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 3064, 3096, 3177, 3209, 3179, 3211 |
| BpmI | CTGGAG | 5 cut(s) | 142, 446, 656, 725, 2706 |
| BpuEI | CTTGAG | 4 cut(s) | 1301, 1388, 1592, 2382 |
| BpuMI | CCSGG | 4 cut(s) | 283, 400, 455, 3667 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2147 |
| BsaHI | GRCGYC | 1 cut(s) | 351 |
| BsaI | GGTCTC | 2 cut(s) | 2546, 3804 |
| BsaJI | CCNNGG | 8 cut(s) | 168, 195, 1438, 1821, 2787, 2949, 3084, 3954 |
| BsaWI | WCCGGW | 5 cut(s) | 240, 415, 780, 1699, 2588 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 104, 134, 711, 741, 3744, 3774, 3861, 3891 |
| Bse118I | RCCGGY | 4 cut(s) | 388, 477, 800, 3659 |
| Bse1I | ACTGG | 9 cut(s) | 463, 1271, 1291, 2031, 2421, 2732, 3412, 3934, 3994 |
| Bse21I | CCTNAGG | 2 cut(s) | 1227, 3009 |
| Bse3DI | GCAATG | 5 cut(s) | 1906, 2493, 3406, 3502, 3697 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2147 |
| BseAI | TCCGGA | 2 cut(s) | 240, 2588 |
| BseBI | CCWGG | 5 cut(s) | 1440, 1823, 1937, 3290, 4013 |
| BseDI | CCNNGG | 8 cut(s) | 168, 195, 1438, 1821, 2787, 2949, 3084, 3954 |
| BseJI | GATNNNNATC | 1 cut(s) | 2147 |
| BseMI | GCAATG | 5 cut(s) | 1906, 2493, 3406, 3502, 3697 |
| BseNI | ACTGG | 9 cut(s) | 463, 1271, 1291, 2031, 2421, 2732, 3412, 3934, 3994 |
| BseRI | GAGGAG | 9 cut(s) | 238, 263, 266, 292, 299, 302, 440, 443, 2910 |
| BseSI | GKGCMC | 3 cut(s) | 288, 2181, 2351 |
| BseYI | CCCAGC | 1 cut(s) | 1783 |
| BsgI | GTGCAG | 1 cut(s) | 1575 |
| Bsh1236I | CGCG | 2 cut(s) | 170, 197 |
| Bsh1285I | CGRYCG | 2 cut(s) | 485, 1740 |
| BsiEI | CGRYCG | 2 cut(s) | 485, 1740 |
| BsiHKAI | GWGCWC | 3 cut(s) | 105, 435, 800 |
| BsiHKCI | CYCGRG | 1 cut(s) | 368 |
| BslFI | GGGAC | 3 cut(s) | 490, 1227, 2587 |
| BsmAI | GTCTC | 8 cut(s) | 82, 504, 921, 1277, 1788, 2513, 2546, 3804 |
| BsmBI | CGTCTC | 2 cut(s) | 82, 504 |
| BsmFI | GGGAC | 3 cut(s) | 490, 1227, 2587 |
| BsmI | GAATGC | 3 cut(s) | 1911, 3273, 3702 |
| Bso31I | GGTCTC | 2 cut(s) | 2546, 3804 |
| BsoBI | CYCGRG | 1 cut(s) | 368 |
| Bsp120I | GGGCCC | 2 cut(s) | 284, 2347 |
| Bsp1286I | GDGCHC | 7 cut(s) | 105, 158, 288, 435, 800, 2181, 2351 |
| Bsp13I | TCCGGA | 2 cut(s) | 240, 2588 |
| BspEI | TCCGGA | 2 cut(s) | 240, 2588 |
| BspFNI | CGCG | 2 cut(s) | 170, 197 |
| BspMAI | CTGCAG | 4 cut(s) | 2017, 2140, 2186, 3176 |
| BspMI | ACCTGC | 2 cut(s) | 1352, 3725 |
| BspQI | GCTCTTC | 2 cut(s) | 440, 2798 |
| BspTI | CTTAAG | 1 cut(s) | 3068 |
| BspTNI | GGTCTC | 2 cut(s) | 2546, 3804 |
| BsrBI | CCGCTC | 3 cut(s) | 606, 1177, 3522 |
| BsrDI | GCAATG | 5 cut(s) | 1906, 2493, 3406, 3502, 3697 |
| BsrFI | RCCGGY | 4 cut(s) | 388, 477, 800, 3659 |
| BsrI | ACTGG | 9 cut(s) | 463, 1271, 1291, 2031, 2421, 2732, 3412, 3934, 3994 |
| BssAI | RCCGGY | 4 cut(s) | 388, 477, 800, 3659 |
| BssECI | CCNNGG | 8 cut(s) | 168, 195, 1438, 1821, 2787, 2949, 3084, 3954 |
| BssNI | GRCGYC | 1 cut(s) | 351 |
| BssSI | CACGAG | 1 cut(s) | 2762 |
| BssT1I | CCWWGG | 4 cut(s) | 2787, 2949, 3084, 3954 |
| Bst2BI | CACGAG | 1 cut(s) | 2762 |
| Bst2UI | CCWGG | 5 cut(s) | 1440, 1823, 1937, 3290, 4013 |
| Bst6I | CTCTTC | 6 cut(s) | 122, 440, 718, 2121, 2475, 2798 |
| BstACI | GRCGYC | 1 cut(s) | 351 |
| BstAFI | CTTAAG | 1 cut(s) | 3068 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 493 |
| BstDSI | CCRYGG | 2 cut(s) | 168, 195 |
| BstFNI | CGCG | 2 cut(s) | 170, 197 |
| BstH2I | RGCGCY | 1 cut(s) | 395 |
| BstHHI | GCGC | 2 cut(s) | 233, 394 |
| BstMAI | GTCTC | 8 cut(s) | 82, 504, 921, 1277, 1788, 2513, 2546, 3804 |
| BstMCI | CGRYCG | 2 cut(s) | 485, 1740 |
| BstNI | CCWGG | 5 cut(s) | 1440, 1823, 1937, 3290, 4013 |
| BstNSI | RCATGY | 3 cut(s) | 562, 2835, 2866 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 913, 2406 |
| BstSCI | CCNGG | 9 cut(s) | 281, 398, 453, 1438, 1821, 1935, 3288, 3665, 4011 |
| BstSFI | CTRYAG | 6 cut(s) | 1761, 2013, 2136, 2182, 2384, 3172 |
| BstSLI | GKGCMC | 3 cut(s) | 288, 2181, 2351 |
| BstUI | CGCG | 2 cut(s) | 170, 197 |
| BstV2I | GAAGAC | 2 cut(s) | 913, 2967 |
| BstX2I | RGATCY | 3 cut(s) | 372, 2148, 3527 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2768, 3239 |
| BstYI | RGATCY | 3 cut(s) | 372, 2148, 3527 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1227, 3009 |
| BsuI | GTATCC | 1 cut(s) | 2947 |
| BtgI | CCRYGG | 2 cut(s) | 168, 195 |
| BtgZI | GCGATG | 1 cut(s) | 202 |
| BtsI | GCAGTG | 7 cut(s) | 2022, 2053, 2179, 2564, 3181, 3616, 3765 |
| BveI | ACCTGC | 2 cut(s) | 1352, 3725 |
| CaiI | CAGNNNCTG | 3 cut(s) | 493, 1004, 1190 |
| CfoI | GCGC | 2 cut(s) | 233, 394 |
| Cfr10I | RCCGGY | 4 cut(s) | 388, 477, 800, 3659 |
| Cfr13I | GGNCC | 8 cut(s) | 243, 284, 285, 1030, 1933, 2347, 2348, 2524 |
| Cfr42I | CCGCGG | 2 cut(s) | 171, 198 |
| CseI | GACGC | 2 cut(s) | 359, 1397 |
| CsiI | ACCWGGT | 1 cut(s) | 1935 |
| Csp6I | GTAC | 6 cut(s) | 469, 835, 1254, 2358, 2858, 3648 |
| CviQI | GTAC | 6 cut(s) | 469, 835, 1254, 2358, 2858, 3648 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 356, 2560 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 356, 2560 |
| EaeI | YGGCCR | 4 cut(s) | 2418, 3229, 3456, 4003 |
| Eam1104I | CTCTTC | 6 cut(s) | 122, 440, 718, 2121, 2475, 2798 |
| EarI | CTCTTC | 6 cut(s) | 122, 440, 718, 2121, 2475, 2798 |
| EciI | GGCGGA | 4 cut(s) | 95, 119, 245, 1126 |
| Ecl136II | GAGCTC | 2 cut(s) | 103, 433 |
| Eco130I | CCWWGG | 4 cut(s) | 2787, 2949, 3084, 3954 |
| Eco147I | AGGCCT | 3 cut(s) | 2002, 2786, 3057 |
| Eco24I | GRGCYC | 5 cut(s) | 105, 158, 288, 435, 2351 |
| Eco31I | GGTCTC | 2 cut(s) | 2546, 3804 |
| Eco32I | GATATC | 1 cut(s) | 3046 |
| Eco47I | GGWCC | 2 cut(s) | 243, 1933 |
| Eco53kI | GAGCTC | 2 cut(s) | 103, 433 |
| Eco57I | CTGAAG | 5 cut(s) | 647, 873, 1435, 2979, 3769 |
| Eco81I | CCTNAGG | 2 cut(s) | 1227, 3009 |
| Eco88I | CYCGRG | 1 cut(s) | 368 |
| EcoICRI | GAGCTC | 2 cut(s) | 103, 433 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2347, 2348, 2524 |
| EcoRI | GAATTC | 2 cut(s) | 586, 862 |
| EcoRII | CCWGG | 5 cut(s) | 1438, 1821, 1935, 3288, 4011 |
| EcoRV | GATATC | 1 cut(s) | 3046 |
| EcoT14I | CCWWGG | 4 cut(s) | 2787, 2949, 3084, 3954 |
| EcoT22I | ATGCAT | 1 cut(s) | 2367 |
| EcoT38I | GRGCYC | 5 cut(s) | 105, 158, 288, 435, 2351 |
| ErhI | CCWWGG | 4 cut(s) | 2787, 2949, 3084, 3954 |
| Esp3I | CGTCTC | 2 cut(s) | 82, 504 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1308, 1340 |
| FaqI | GGGAC | 3 cut(s) | 490, 1227, 2587 |
| FauI | CCCGC | 7 cut(s) | 150, 571, 599, 613, 1364, 1482, 3816 |
| FauNDI | CATATG | 1 cut(s) | 1297 |
| FblI | GTMKAC | 3 cut(s) | 2425, 2773, 3168 |
| FriOI | GRGCYC | 5 cut(s) | 105, 158, 288, 435, 2351 |
| GlaI | GCGC | 2 cut(s) | 232, 393 |
| GsaI | CCCAGC | 1 cut(s) | 1787 |
| GsuI | CTGGAG | 5 cut(s) | 142, 446, 656, 725, 2706 |
| HaeII | RGCGCY | 1 cut(s) | 395 |
| HgaI | GACGC | 2 cut(s) | 359, 1397 |
| HhaI | GCGC | 2 cut(s) | 233, 394 |
| Hin1I | GRCGYC | 1 cut(s) | 351 |
| Hin6I | GCGC | 2 cut(s) | 231, 392 |
| HinP1I | GCGC | 2 cut(s) | 231, 392 |
| HincII | GTYRAC | 2 cut(s) | 1828, 3807 |
| HindII | GTYRAC | 2 cut(s) | 1828, 3807 |
| HphI | GGTGA | 3 cut(s) | 1504, 2572, 3454 |
| Hpy99I | CGWCG | 6 cut(s) | 353, 533, 536, 539, 542, 545 |
| HpyCH4IV | ACGT | 4 cut(s) | 543, 2576, 2623, 2653 |
| HpySE526I | ACGT | 4 cut(s) | 543, 2576, 2623, 2653 |
| Hsp92I | GRCGYC | 1 cut(s) | 351 |
| HspAI | GCGC | 2 cut(s) | 231, 392 |
| Kpn2I | TCCGGA | 2 cut(s) | 240, 2588 |
| KroI | GCCGGC | 2 cut(s) | 388, 477 |
| KroNI | GCCGGC | 2 cut(s) | 390, 479 |
| KspI | CCGCGG | 2 cut(s) | 171, 198 |
| LguI | GCTCTTC | 2 cut(s) | 440, 2798 |
| LweI | GCATC | 3 cut(s) | 372, 3006, 3587 |
| MabI | ACCWGGT | 1 cut(s) | 1935 |
| MaeII | ACGT | 4 cut(s) | 543, 2576, 2623, 2653 |
| MaeIII | GTNAC | 7 cut(s) | 1273, 2068, 2562, 3316, 3460, 3631, 3985 |
| MbiI | CCGCTC | 3 cut(s) | 606, 1177, 3522 |
| MflI | RGATCY | 3 cut(s) | 372, 2148, 3527 |
| MhlI | GDGCHC | 7 cut(s) | 105, 158, 288, 435, 800, 2181, 2351 |
| MlsI | TGGCCA | 2 cut(s) | 2420, 3231 |
| MluNI | TGGCCA | 2 cut(s) | 2420, 3231 |
| MlyI | GAGTC | 5 cut(s) | 979, 1622, 1823, 1937, 3119 |
| MmeI | TCCRAC | 2 cut(s) | 732, 3726 |
| Mox20I | TGGCCA | 2 cut(s) | 2420, 3231 |
| Mph1103I | ATGCAT | 1 cut(s) | 2367 |
| MreI | CGCCGGCG | 1 cut(s) | 477 |
| MroI | TCCGGA | 2 cut(s) | 240, 2588 |
| MroNI | GCCGGC | 2 cut(s) | 388, 477 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3159 |
| MscI | TGGCCA | 2 cut(s) | 2420, 3231 |
| MslI | CAYNNNNRTG | 4 cut(s) | 18, 563, 1088, 3237 |
| Msp20I | TGGCCA | 2 cut(s) | 2420, 3231 |
| MspA1I | CMGCKG | 6 cut(s) | 170, 197, 342, 2012, 2123, 2720 |
| MspCI | CTTAAG | 1 cut(s) | 3068 |
| MspR9I | CCNGG | 9 cut(s) | 283, 400, 455, 1440, 1823, 1937, 3290, 3667, 4013 |
| Mva1269I | GAATGC | 3 cut(s) | 1911, 3273, 3702 |
| MvaI | CCWGG | 5 cut(s) | 1440, 1823, 1937, 3290, 4013 |
| MvnI | CGCG | 2 cut(s) | 170, 197 |
| NaeI | GCCGGC | 2 cut(s) | 390, 479 |
| NciI | CCSGG | 4 cut(s) | 283, 400, 455, 3667 |
| NdeI | CATATG | 1 cut(s) | 1297 |
| NgoMIV | GCCGGC | 2 cut(s) | 388, 477 |
| NmeAIII | GCCGAG | 2 cut(s) | 2481, 2884 |
| NmuCI | GTSAC | 6 cut(s) | 1273, 2068, 2562, 3460, 3631, 3985 |
| NsiI | ATGCAT | 1 cut(s) | 2367 |
| NspI | RCATGY | 3 cut(s) | 562, 2835, 2866 |
| PaeI | GCATGC | 1 cut(s) | 2835 |
| PaeR7I | CTCGAG | 1 cut(s) | 368 |
| PceI | AGGCCT | 3 cut(s) | 2002, 2786, 3057 |
| PciI | ACATGT | 1 cut(s) | 558 |
| PciSI | GCTCTTC | 2 cut(s) | 440, 2798 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 219, 354, 528, 534, 537, 540, 1639, 2064 |
| PctI | GAATGC | 3 cut(s) | 1911, 3273, 3702 |
| PdiI | GCCGGC | 2 cut(s) | 390, 479 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3159 |
| PfoI | TCCNGGA | 2 cut(s) | 3288, 3665 |
| Ple19I | CGATCG | 1 cut(s) | 485 |
| PleI | GAGTC | 5 cut(s) | 978, 1621, 1823, 1937, 3119 |
| PpsI | GAGTC | 5 cut(s) | 978, 1621, 1823, 1937, 3119 |
| PscI | ACATGT | 1 cut(s) | 558 |
| PshAI | GACNNNNGTC | 2 cut(s) | 913, 2406 |
| PshBI | ATTAAT | 1 cut(s) | 1707 |
| PsiI | TTATAA | 1 cut(s) | 2646 |
| Psp124BI | GAGCTC | 2 cut(s) | 105, 435 |
| Psp6I | CCWGG | 5 cut(s) | 1438, 1821, 1935, 3288, 4011 |
| PspFI | CCCAGC | 1 cut(s) | 1783 |
| PspGI | CCWGG | 5 cut(s) | 1438, 1821, 1935, 3288, 4011 |
| PspOMI | GGGCCC | 2 cut(s) | 284, 2347 |
| PspPI | GGNCC | 8 cut(s) | 243, 284, 285, 1030, 1933, 2347, 2348, 2524 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3631, 3663 |
| PstI | CTGCAG | 4 cut(s) | 2017, 2140, 2186, 3176 |
| PstNI | CAGNNNCTG | 3 cut(s) | 493, 1004, 1190 |
| PsuI | RGATCY | 3 cut(s) | 372, 2148, 3527 |
| PvuI | CGATCG | 1 cut(s) | 485 |
| PvuII | CAGCTG | 2 cut(s) | 2012, 2720 |
| RgaI | GCGATCGC | 1 cut(s) | 485 |
| RsaI | GTAC | 6 cut(s) | 470, 836, 1255, 2359, 2859, 3649 |
| RsaNI | GTAC | 6 cut(s) | 469, 835, 1254, 2358, 2858, 3648 |
| RseI | CAYNNNNRTG | 4 cut(s) | 18, 563, 1088, 3237 |
| SacI | GAGCTC | 2 cut(s) | 105, 435 |
| SacII | CCGCGG | 2 cut(s) | 171, 198 |
| SapI | GCTCTTC | 2 cut(s) | 440, 2798 |
| Sau96I | GGNCC | 8 cut(s) | 243, 284, 285, 1030, 1933, 2347, 2348, 2524 |
| SchI | GAGTC | 5 cut(s) | 979, 1622, 1823, 1937, 3119 |
| ScrFI | CCNGG | 9 cut(s) | 283, 400, 455, 1440, 1823, 1937, 3290, 3667, 4013 |
| SduI | GDGCHC | 7 cut(s) | 105, 158, 288, 435, 800, 2181, 2351 |
| SexAI | ACCWGGT | 1 cut(s) | 1935 |
| SfaAI | GCGATCGC | 1 cut(s) | 485 |
| SfaNI | GCATC | 3 cut(s) | 372, 3006, 3587 |
| SfcI | CTRYAG | 6 cut(s) | 1761, 2013, 2136, 2182, 2384, 3172 |
| Sfr274I | CTCGAG | 1 cut(s) | 368 |
| Sfr303I | CCGCGG | 2 cut(s) | 171, 198 |
| SgfI | GCGATCGC | 1 cut(s) | 485 |
| SgrAI | CRCCGGYG | 2 cut(s) | 477, 800 |
| SgrBI | CCGCGG | 2 cut(s) | 171, 198 |
| SinI | GGWCC | 2 cut(s) | 243, 1933 |
| SlaI | CTCGAG | 1 cut(s) | 368 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 18, 563, 1088, 3237 |
| SmlI | CTYRAG | 6 cut(s) | 368, 1280, 1403, 1607, 2397, 3068 |
| SmoI | CTYRAG | 6 cut(s) | 368, 1280, 1403, 1607, 2397, 3068 |
| SpeI | ACTAGT | 2 cut(s) | 38, 1250 |
| SphI | GCATGC | 1 cut(s) | 2835 |
| SseBI | AGGCCT | 3 cut(s) | 2002, 2786, 3057 |
| SspI | AATATT | 3 cut(s) | 2518, 2937, 3222 |
| SstI | GAGCTC | 2 cut(s) | 105, 435 |
| StuI | AGGCCT | 3 cut(s) | 2002, 2786, 3057 |
| StyD4I | CCNGG | 9 cut(s) | 281, 398, 453, 1438, 1821, 1935, 3288, 3665, 4011 |
| StyI | CCWWGG | 4 cut(s) | 2787, 2949, 3084, 3954 |
| TaiI | ACGT | 4 cut(s) | 546, 2579, 2626, 2656 |
| TaqI | TCGA | 8 cut(s) | 348, 369, 426, 548, 584, 596, 1740, 3298 |
| TaqII | GACCGA | 1 cut(s) | 1726 |
| TatI | WGTACW | 1 cut(s) | 2357 |
| TauI | GCSGC | 9 cut(s) | 71, 111, 135, 173, 197, 339, 342, 356, 645 |
| TseFI | GTSAC | 6 cut(s) | 1273, 2068, 2562, 3460, 3631, 3985 |
| Tsp45I | GTSAC | 6 cut(s) | 1273, 2068, 2562, 3460, 3631, 3985 |
| TspGWI | ACGGA | 5 cut(s) | 419, 843, 2990, 3198, 3227 |
| Vha464I | CTTAAG | 1 cut(s) | 3068 |
| VpaK11BI | GGWCC | 2 cut(s) | 243, 1933 |
| VspI | ATTAAT | 1 cut(s) | 1707 |
| XceI | RCATGY | 3 cut(s) | 562, 2835, 2866 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1205 |
| XhoI | CTCGAG | 1 cut(s) | 368 |
| XmiI | GTMKAC | 3 cut(s) | 2425, 2773, 3168 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3159 |
| Zsp2I | ATGCAT | 1 cut(s) | 2367 |