RLG00000011123

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001838
Physical Location & Seq
Forward (+)
6993298 .. 7000119
6822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011123

Sequence Viewer

Length: 3936 bp
ATGGCTAAGAACTATAGATTTTCAATGGACCAAAAGGACATTGTTAGGGTATTGATTACCACAGTAGATGGTTTTATTCGGGATCAGCTGATCAATAAAGAACAGAGAAGCCAACACAGGGAACAGTGTGCTGAAAGATTGGCAGCTGAAGATGGATCCTGTGGTAAAGAAACCGAGGTTCGTTACTCTGATCAAGCAGTGCTAGCAAATCTGGATTGGGGTATTGAGGCTCTTGAAGAAGCAATCGACACTTCAAATATGGAAACTAAGCTTGCAAGATTAGACCATGCTGAAAAAATGTTGCAAGTTTGTGCCATGTTGAATTCTGATCAGAAAACTGCTGGAGTCCCCAATTTTTACCTCTCAGCTTGGGCACACCTCAACTTAGCATACCTGTGGAAATTGAGGAATAACATCCAAAACTCAGTTCTCCATGTCATTGAGATGTTTACAGTTGATCCTTTTTTCTCACGGATAGATTTTGCTCCTGAAATCTGGAAACTTTTGTTTCTTCCACACATGAACTCAATTATAGGGTGGTATTCGGAGCAGAGGCACCGGCTTATGATGGAAGTAATTCCTGATTCTCATGATCTGTCTTTCACAGCTGATCTTGATCAATTTTTCAATGAGTCTTTAATCTTTTCAATGAGGCCGGATCAGATAGAGAAATTGCAAAAGCTGGAGCAGCTTTATGGTGAGTCATTGGATGAGAACACAAGGCTTTATGCCAAGTACTTCAAGGATTGCATGACATCTGATTCAACCTCCAGTAAGAAAGTGATTCCAATGTTGCCAATTGCTGAGCCACCAATGACTCCATTGCATGAGGTCAGCCGCTCGATTCCTGATTTTGTCAAGTTTGGTCCTATCTTGCCCAAGAGTGCTGGCTTTTCTCCCATCCTCAAGTCTAAAGATGGCACAAGAGACGTAAACAGAATGAATCTAAGTTCTGCATCTTCACAAAATTTGGAGCCTGTCAGATGGGATCCTCAGGAATGTATCCCCGAGGAGAACGAATATGAATCCGATTATGAGCCAAATGATGCTAATATGGCTTCTGATCACGAGAAGGAAACTGGAGGAAAAGTACAGTCATCTGTTCTCAGGAGTCGAGTACATAGCCCAACAATCTTTTCTCCACTAATTTCTCCTAAAACTTCACCAAAAGTTTCATCTCCAAAACCAGACACAGCTGCTTCTGCATTGCGTTTACTGTCTGTCAAAATCACAGATTCAGCTGTTGCCACCTCTTTGCCTGCATCTCCGGGCATGGGCAATGATTACAGCATCAGCTCTGCAGACTCTGATGTTGAAGTGATAGAGACTACCAAAAGTTGCAGGAAAGTCTATAGCCGAACATCAAGCATGAATAACGAGCTTGTGAAAATGTCAAAAAATAGTCCACCTAATGAAAATGATGAAGGAGGCCAGAGCTGTGTTTCACTTCCATCTTCTGAGAGGATGACTACTAAGTCAAGACCACCTAAGGATTTTGTTTGTCCTATCACTGGCCAGATATTTATTGATCCAGTTACTCTTGAAACAGGTCAGACATACGAAAGAAAAGCAATCCAAGAATGGCTGAAACGAGGAAACACAACCTGTCCCATTACGCGGCAACCCATCTCTACAACTACTCAGCTGCCTAAAACAAACTATGTTTTGAAAAGACTGATAACCTCTTGGAAAGAACAGCATCCTGAACTCGCTCAAGAATGTGCATACTACGAAACACCAAGAAACTCATTCCACCGCTCCTCCGTGAAAGAAGTCCATTCTGGTACCACAACTCCACAAAGAACATGTGACTTCATGGGTCATAGGAATACCGATGATTATATCAGCCAAAGGAGCAAAAGGTTTATGCAGGCAGCTGTTTCTACATCACCAACCAGTGTGATATCTCAAGCTGCAGTTGAGACTATTATCAATGGCTTAAAGCCTCATGTTGCATGTCTGTGTACTTCAGATAAACTTCAAGAGTGTGAAACAGCAGTGTTAGAAATAGGCAGATTATGGAAGGACTCAAAGAGTGATCCTGCAATTCATACATTCTTATCGGAGCTGACAACTGTGAATGGATTCATCGAAATACTTTCAGCTTCTCTGAATAGGGAAGTCCTGAGAACATCTATTTACATCCTCTCCGAGCTAATATTTGCCGATGAAAGTGTTGGAGAAACACTTACCAGTGTCGACTCCGACCTTGATTGCCTGGCTGCTCTTTTAAAGAATGGACTAGCTGAGCCTGCTGTTCTCATTTACCAGCTGAGGCCTGTGTTTGCTCAGCTTTCAGCTCATGATCTTATACCCTCCCTTGTGCAGCTAATTCAGAGCAAAAATGAGGAATCAAATGATCTTCAATTAGTAATGGACCCCAAAGATGCTGCATTAGCTATTCTTGAGCAAGTCTTGATGGGAGGAGATGAAAATAGTAGATCCATTAATGCTTTGAGTGTTTTTTCTGCGAGTGGTATACCTGCTCTAGTTAAGTGTTTAGATAGGCCAGAAGGAAGAAGGTCCATTGTTTCTATTCTATTATGCTGCATGCAAGCTGAAAAAACTTGCAGGAACTTGATAGCAAATAGAATTGAGCTGTCTCCTGTTCTCGAACTATTTCACGCTGGAAGTGATGGTGTGAGAGGCATATGTGTAGAGTTTCTCTCAGAACTGGTACAGTTGAACAGGAGAACATTGTGCAATCAGATCTTGCAGACGATTAAAGACGAAGGAGCATTTAGTACAATGCATACCTTTCTTGTATATCTTCAAATGGCTCCAATGGAGCAGCAACCTGCAATTGCTACTCTCCTTCTTCAGCTTGATCTCCTGGTTGAGCCTTGGAAGATGAGCATTTATAGGGAAGAATCTATAGAGGCACTAATTGAGGCACTCCGAAGGAAAGACTTCTCAAACTCTCAAATAATGGCTTTAGATGCCTTGTTATCTCTTACTGGACGTGTGACTTCATCCGGGGATTCATACACTGAAGCCTGGTTACTCAAGATTGCTGGGTTTGATCAACCTTACAATGCTTTGATGAAGGCAGAGCGGCTAAGAAAACAAGACAATGATTTGACGGAGACAATGGAAGAAGAAGAGAAAGCAGTAAGCTCTTGGCAGAAAAAAGTTGCTTTTGTACTTTGCAACCATGAGAAGGGATCCATTTTTAAAGCTTTGGAAGCATGCCTCAAGAGTAAATCCATTGAGATGGCAAAGTCATGTCTTGTCATAGCTACATGGCTCACACACATGCTTTCTGTACTTCCTGATACAGGTGTGAAAATCAGTGCTCGCAAGGCCTTGCTTGAAGAATTCATAAATGTTCTCCAATCATCGAATAATTTGGAGGAGAAGATTTTAGCAACCCTGGCTTTGAAATCTTTTGTCGGTGAACCAGCTGCACTTGAAGCACTAGGAGTGTATGCTAAATGCATCTACAAAACATTGAGAAAGCTTAAGAGGAGCACTGTGGTGGCGAGTGACATAATGAAAGCGCTGATGAACATGTCATCTGTTGACGTAACAGAGATGTGGAGCTGTGCTGAAGTGGTTGAACTAGATTCAAGCTCAAATGGGGAGGTTACATCTGTACTTCATCTAAAAGGCCGTGTTTTAAGCAGCCATTCTGATGGAACTATGAAGGTATGGGATGCTGGCAAGAAAGTATTAAGACTGATTCAAGAAGTCCGCGAGCACACAAAAGCTGTCACATGCCTCTATATTTCACCTTCAGGTGATAAATTATACAGCGGTTCGTTAGACAAAACTATTCGGGTGTGGGCAATCAAAGCAGAAGAAATTCATTGCCTTCAGGTTCACGATGTGAAAGAGGTAGTATATGAGTTGGTAGCAAATGCTAAAGTGGCGTGCTTCATTTCTCAAGGCACTGGAGTGAAGGTAATTACATGCACACTAGTCTTTATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box WD40

Protein Analysis

1312

Amino Acids

146.38

Weight (kDa)

5.62

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_LIN PF23568 9 - 268 5.1e-75 E3 ubiquitin-protein ligase LIN-like, ARM repeat
U-box PF04564 496 - 567 1.4e-15 U-box domain
ARM_LIN_2nd PF23654 642 - 803 2.4e-61 E3 ubiquitin-protein ligase LIN-like, ARM repeat
ARM_LIN_C PF23628 804 - 1166 5.9e-116 Putative E3 ubiquitin-protein ligase LIN, ARM-like domain
Beta-prop_WDR5 PF25175 1178 - 1276 7.8e-10 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 1185 - 1294 1.6e-10 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 1185 - 1268 7.1e-06 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 1192 - 1284 4.6e-09 Prp19 WD40 domain
Beta-prop_EML PF23409 1196 - 1290 3.5e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 1203 - 1268 1.1e-09 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 1205 - 1267 2.3e-08 WDR3 second beta-propeller domain
WD40 PF00400 1227 - 1262 4.6e-08 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1474
Acc36I ACCTGC 2 cut(s) 2491, 2806
Acc65I GGTACC 1 cut(s) 1784
AccB1I GGYRCC 2 cut(s) 555, 1784
AccBSI CCGCTC 3 cut(s) 840, 1758, 3055
AccI GTMKAC 2 cut(s) 2199, 2479
AccII CGCG 2 cut(s) 1618, 3696
AciI CCGC 6 cut(s) 838, 1618, 1756, 3055, 3694, 3756
AcoI YGGCCR 1 cut(s) 1513
AcsI RAATTY 4 cut(s) 322, 967, 3317, 3804
AcuI CTGAAG 7 cut(s) 168, 1953, 2804, 3012, 3570, 3720, 3800
AdeI CACNNNGTG 1 cut(s) 3829
AfeI AGCGCT 1 cut(s) 3501
AfiI CCNNNNNNNGG 6 cut(s) 118, 1274, 1511, 1617, 3160, 3278
AflII CTTAAG 1 cut(s) 3461
AflIII ACRYGT 3 cut(s) 1805, 2962, 3510
AhlI ACTAGT 1 cut(s) 3919
AjiI CACGTC 1 cut(s) 2963
AjnI CCWGG 4 cut(s) 2217, 2832, 2996, 3372
AjuI GAANNNNNNNTTGG 4 cut(s) 411, 443, 1120, 1152
AleI CACNNNNGTG 2 cut(s) 3476, 3896
Alw21I GWGCWC 3 cut(s) 3298, 3473, 3702
Alw26I GTCTC 5 cut(s) 921, 1319, 1916, 2607, 3080
AlwNI CAGNNNCTG 1 cut(s) 1307
Ama87I CYCGRG 1 cut(s) 1007
Aor51HI AGCGCT 1 cut(s) 3501
AoxI GGCC 7 cut(s) 653, 1429, 1513, 2276, 2507, 3303, 3610
ApoI RAATTY 4 cut(s) 322, 967, 3317, 3804
AseI ATTAAT 1 cut(s) 2448
Asp700I GAANNNNTTC 5 cut(s) 576, 2084, 2619, 2909, 3804
Asp718I GGTACC 1 cut(s) 1784
AspLEI GCGC 1 cut(s) 3502
AspS9I GGNCC 4 cut(s) 28, 866, 2377, 2523
AsuC2I CCSGG 2 cut(s) 1269, 2977
AsuHPI GGTGA 6 cut(s) 710, 1155, 1881, 3407, 3723, 3752
AsuNHI GCTAGC 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 1007
AvaII GGWCC 4 cut(s) 28, 866, 2377, 2523
AxyI CCTNAGG 2 cut(s) 993, 1488
BaeGI GKGCMC 1 cut(s) 376
BaeI ACNNNNGTAYC 2 cut(s) 3267, 3300
BalI TGGCCA 1 cut(s) 1515
BamHI GGATCC 3 cut(s) 155, 988, 3164
BanI GGYRCC 2 cut(s) 555, 1784
BarI GAAGNNNNNNTAC 2 cut(s) 2985, 3017
BauI CACGAG 1 cut(s) 1067
Bbv12I GWGCWC 3 cut(s) 3298, 3473, 3702
BbvCI CCTCAGC 1 cut(s) 2273
BceAI ACGGC 1 cut(s) 3597
BciT130I CCWGG 4 cut(s) 2219, 2834, 2998, 3374
BciVI GTATCC 1 cut(s) 1013
BclI TGATCA 6 cut(s) 90, 190, 328, 616, 1063, 3022
BcnI CCSGG 2 cut(s) 1269, 2977
BcoDI GTCTC 5 cut(s) 921, 1319, 1916, 2607, 3080
BcuI ACTAGT 1 cut(s) 3919
BfaI CTAG 6 cut(s) 203, 2243, 2489, 3419, 3563, 3920
BfmI CTRYAG 5 cut(s) 13, 1299, 1351, 1914, 2874
BfoI RGCGCY 1 cut(s) 3503
BfrI CTTAAG 1 cut(s) 3461
BfuAI ACCTGC 2 cut(s) 2491, 2806
BfuI GTATCC 1 cut(s) 1013
BglII AGATCT 1 cut(s) 2709
BlpI GCTNAGC 3 cut(s) 804, 2247, 2289
BmcAI AGTACT 1 cut(s) 737
Bme1390I CCNGG 6 cut(s) 1269, 2219, 2834, 2977, 2998, 3374
Bme18I GGWCC 4 cut(s) 28, 866, 2377, 2523
BmeT110I CYCGRG 1 cut(s) 1007
BmgBI CACGTC 1 cut(s) 2963
BmgT120I GGNCC 4 cut(s) 28, 866, 2377, 2523
BmiI GGNNCC 8 cut(s) 157, 557, 975, 990, 1786, 2379, 2781, 3166
BmrFI CCNGG 6 cut(s) 1269, 2219, 2834, 2977, 2998, 3374
BmsI GCATC 9 cut(s) 965, 1036, 1271, 1299, 1708, 2377, 2929, 3447, 3646
BmtI GCTAGC 1 cut(s) 206
BplI GAGNNNNNCTC 2 cut(s) 2651, 2683
BpmI CTGGAG 5 cut(s) 363, 704, 754, 1101, 3915
Bpu10I CCTNAGC 1 cut(s) 2273
Bpu1102I GCTNAGC 3 cut(s) 804, 2247, 2289
BpuEI CTTGAG 7 cut(s) 890, 1698, 1893, 2426, 2990, 3179, 3870
BpuMI CCSGG 2 cut(s) 1269, 2977
BsaBI GATNNNNATC 1 cut(s) 615
BsaJI CCNNGG 5 cut(s) 174, 1008, 2843, 2976, 3372
Bsc4I CCNNNNNNNGG 6 cut(s) 118, 1274, 1511, 1617, 3160, 3278
Bse118I RCCGGY 1 cut(s) 558
Bse1I ACTGG 9 cut(s) 771, 1084, 1516, 1532, 1896, 2193, 2679, 2962, 3898
Bse21I CCTNAGG 2 cut(s) 993, 1488
Bse3DI GCAATG 4 cut(s) 821, 1205, 1285, 3808
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 4 cut(s) 2219, 2834, 2998, 3374
BseDI CCNNGG 5 cut(s) 174, 1008, 2843, 2976, 3372
BseGI GGATG 8 cut(s) 414, 715, 900, 1470, 1699, 2142, 2972, 3661
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 6 cut(s) 118, 1274, 1511, 1617, 3160, 3278
BseMI GCAATG 4 cut(s) 821, 1205, 1285, 3808
BseNI ACTGG 9 cut(s) 771, 1084, 1516, 1532, 1896, 2193, 2679, 2962, 3898
BseRI GAGGAG 5 cut(s) 1025, 1750, 2439, 3368, 3481
BseSI GKGCMC 1 cut(s) 376
BseYI CCCAGC 1 cut(s) 3014
BsgI GTGCAG 2 cut(s) 2345, 3390
Bsh1236I CGCG 2 cut(s) 1618, 3696
BshFI GGCC 7 cut(s) 655, 1431, 1515, 2278, 2509, 3305, 3612
BshNI GGYRCC 2 cut(s) 555, 1784
BsiHKAI GWGCWC 3 cut(s) 3298, 3473, 3702
BsiHKCI CYCGRG 1 cut(s) 1007
BsiSI CCGG 4 cut(s) 559, 656, 1268, 2976
BslFI GGGAC 2 cut(s) 332, 1593
BslI CCNNNNNNNGG 6 cut(s) 118, 1274, 1511, 1617, 3160, 3278
BsmAI GTCTC 5 cut(s) 921, 1319, 1916, 2607, 3080
BsmBI CGTCTC 1 cut(s) 921
BsmFI GGGAC 2 cut(s) 332, 1593
BsnI GGCC 7 cut(s) 655, 1431, 1515, 2278, 2509, 3305, 3612
BsoBI CYCGRG 1 cut(s) 1007
Bsp1286I GDGCHC 4 cut(s) 376, 3298, 3473, 3702
Bsp1720I GCTNAGC 3 cut(s) 804, 2247, 2289
BspACI CCGC 6 cut(s) 838, 1618, 1756, 3055, 3694, 3756
BspANI GGCC 7 cut(s) 655, 1431, 1515, 2278, 2509, 3305, 3612
BspFNI CGCG 2 cut(s) 1618, 3696
BspHI TCATGA 2 cut(s) 589, 2302
BspLI GGNNCC 8 cut(s) 157, 557, 975, 990, 1786, 2379, 2781, 3166
BspMAI CTGCAG 2 cut(s) 1303, 1918
BspMI ACCTGC 2 cut(s) 2491, 2806
BspOI GCTAGC 1 cut(s) 206
BspT107I GGYRCC 2 cut(s) 555, 1784
BspTI CTTAAG 1 cut(s) 3461
BsrBI CCGCTC 3 cut(s) 840, 1758, 3055
BsrDI GCAATG 4 cut(s) 821, 1205, 1285, 3808
BsrFI RCCGGY 1 cut(s) 558
BsrI ACTGG 9 cut(s) 771, 1084, 1516, 1532, 1896, 2193, 2679, 2962, 3898
BssAI RCCGGY 1 cut(s) 558
BssECI CCNNGG 5 cut(s) 174, 1008, 2843, 2976, 3372
BssNAI GTATAC 1 cut(s) 2480
BssSI CACGAG 1 cut(s) 1067
BssT1I CCWWGG 1 cut(s) 2843
Bst1107I GTATAC 1 cut(s) 2480
Bst2BI CACGAG 1 cut(s) 1067
Bst2UI CCWGG 4 cut(s) 2219, 2834, 2998, 3374
Bst4CI ACNGT 8 cut(s) 64, 126, 454, 1095, 1218, 2077, 2682, 3475
Bst6I CTCTTC 1 cut(s) 3096
BstAFI CTTAAG 1 cut(s) 3461
BstENI CCTNNNNNAGG 1 cut(s) 3276
BstF5I GGATG 8 cut(s) 414, 715, 900, 1470, 1699, 2142, 2972, 3661
BstFNI CGCG 2 cut(s) 1618, 3696
BstH2I RGCGCY 1 cut(s) 3503
BstHHI GCGC 1 cut(s) 3502
BstMAI GTCTC 5 cut(s) 921, 1319, 1916, 2607, 3080
BstNI CCWGG 4 cut(s) 2219, 2834, 2998, 3374
BstNSI RCATGY 8 cut(s) 1809, 1959, 2554, 3192, 3259, 3514, 3720, 3915
BstSCI CCNGG 6 cut(s) 1267, 2217, 2832, 2975, 2996, 3372
BstSFI CTRYAG 5 cut(s) 13, 1299, 1351, 1914, 2874
BstSLI GKGCMC 1 cut(s) 376
BstUI CGCG 2 cut(s) 1618, 3696
BstX2I RGATCY 5 cut(s) 155, 988, 2441, 2709, 3164
BstXI CCANNNNNNTGG 2 cut(s) 3214, 3635
BstYI RGATCY 5 cut(s) 155, 988, 2441, 2709, 3164
BstZ17I GTATAC 1 cut(s) 2480
Bsu36I CCTNAGG 2 cut(s) 993, 1488
BsuI GTATCC 1 cut(s) 1013
BsuRI GGCC 7 cut(s) 655, 1431, 1515, 2278, 2509, 3305, 3612
BtrI CACGTC 1 cut(s) 2963
BtsCI GGATG 8 cut(s) 414, 715, 900, 1470, 1699, 2142, 2972, 3661
BtsI GCAGTG 2 cut(s) 204, 2004
BveI ACCTGC 2 cut(s) 2491, 2806
CaiI CAGNNNCTG 1 cut(s) 1307
CciI TCATGA 2 cut(s) 589, 2302
CfoI GCGC 1 cut(s) 3502
Cfr10I RCCGGY 1 cut(s) 558
Cfr13I GGNCC 4 cut(s) 28, 866, 2377, 2523
DraI TTTAAA 2 cut(s) 2232, 3175
DraIII CACNNNGTG 1 cut(s) 3829
DrdI GACNNNNNNGTC 1 cut(s) 1474
DseDI GACNNNNNNGTC 1 cut(s) 1474
EaeI YGGCCR 1 cut(s) 1513
Eam1104I CTCTTC 1 cut(s) 3096
EarI CTCTTC 1 cut(s) 3096
Eco130I CCWWGG 1 cut(s) 2843
Eco147I AGGCCT 2 cut(s) 2278, 3305
Eco32I GATATC 1 cut(s) 1905
Eco47I GGWCC 4 cut(s) 28, 866, 2377, 2523
Eco47III AGCGCT 1 cut(s) 3501
Eco57I CTGAAG 7 cut(s) 168, 1953, 2804, 3012, 3570, 3720, 3800
Eco81I CCTNAGG 2 cut(s) 993, 1488
Eco88I CYCGRG 1 cut(s) 1007
EcoNI CCTNNNNNAGG 1 cut(s) 3276
EcoRI GAATTC 2 cut(s) 322, 3317
EcoRII CCWGG 4 cut(s) 2217, 2832, 2996, 3372
EcoRV GATATC 1 cut(s) 1905
EcoT14I CCWWGG 1 cut(s) 2843
EcoT22I ATGCAT 2 cut(s) 2754, 3440
ErhI CCWWGG 1 cut(s) 2843
Esp3I CGTCTC 1 cut(s) 921
FaqI GGGAC 2 cut(s) 332, 1593
FauNDI CATATG 1 cut(s) 2651
FbaI TGATCA 6 cut(s) 90, 190, 328, 616, 1063, 3022
FblI GTMKAC 2 cut(s) 2199, 2479
FokI GGATG 8 cut(s) 401, 722, 887, 1477, 1686, 2129, 2959, 3668
FspBI CTAG 6 cut(s) 203, 2243, 2489, 3419, 3563, 3920
GlaI GCGC 1 cut(s) 3501
GsaI CCCAGC 1 cut(s) 3018
GsuI CTGGAG 5 cut(s) 363, 704, 754, 1101, 3915
HaeII RGCGCY 1 cut(s) 3503
HaeIII GGCC 7 cut(s) 655, 1431, 1515, 2278, 2509, 3305, 3612
HapII CCGG 4 cut(s) 559, 656, 1268, 2976
HhaI GCGC 1 cut(s) 3502
Hin6I GCGC 1 cut(s) 3500
HinP1I GCGC 1 cut(s) 3500
HincII GTYRAC 2 cut(s) 2200, 3523
HindII GTYRAC 2 cut(s) 2200, 3523
HindIII AAGCTT 3 cut(s) 269, 3177, 3458
HpaII CCGG 4 cut(s) 559, 656, 1268, 2976
HphI GGTGA 6 cut(s) 710, 1155, 1881, 3407, 3723, 3752
HpyCH4III ACNGT 8 cut(s) 64, 126, 454, 1095, 1218, 2077, 2682, 3475
HpyCH4IV ACGT 3 cut(s) 930, 2962, 3525
HpySE526I ACGT 3 cut(s) 930, 2962, 3525
HspAI GCGC 1 cut(s) 3500
KpnI GGTACC 1 cut(s) 1788
Ksp22I TGATCA 6 cut(s) 90, 190, 328, 616, 1063, 3022
LweI GCATC 9 cut(s) 965, 1036, 1271, 1299, 1708, 2377, 2929, 3447, 3646
MaeI CTAG 6 cut(s) 203, 2243, 2489, 3419, 3563, 3920
MaeII ACGT 3 cut(s) 930, 2962, 3525
MaeIII GTNAC 9 cut(s) 182, 1534, 1808, 2965, 3000, 3485, 3526, 3586, 3712
MbiI CCGCTC 3 cut(s) 840, 1758, 3055
MfeI CAATTG 2 cut(s) 798, 2802
MflI RGATCY 5 cut(s) 155, 988, 2441, 2709, 3164
MhlI GDGCHC 4 cut(s) 376, 3298, 3473, 3702
MlsI TGGCCA 1 cut(s) 1515
MluNI TGGCCA 1 cut(s) 1515
MlyI GAGTC 8 cut(s) 354, 641, 710, 811, 1120, 1298, 2021, 2195
MmeI TCCRAC 2 cut(s) 2158, 2229
Mox20I TGGCCA 1 cut(s) 1515
Mph1103I ATGCAT 2 cut(s) 2754, 3440
MroXI GAANNNNTTC 5 cut(s) 576, 2084, 2619, 2909, 3804
MscI TGGCCA 1 cut(s) 1515
MslI CAYNNNNRTG 8 cut(s) 394, 443, 1960, 3212, 3254, 3476, 3633, 3896
Msp20I TGGCCA 1 cut(s) 1515
MspCI CTTAAG 1 cut(s) 3461
MspI CCGG 4 cut(s) 559, 656, 1268, 2976
MspR9I CCNGG 6 cut(s) 1269, 2219, 2834, 2977, 2998, 3374
MunI CAATTG 2 cut(s) 798, 2802
MvaI CCWGG 4 cut(s) 2219, 2834, 2998, 3374
MvnI CGCG 2 cut(s) 1618, 3696
NciI CCSGG 2 cut(s) 1269, 2977
NdeI CATATG 1 cut(s) 2651
NheI GCTAGC 1 cut(s) 202
NlaIV GGNNCC 8 cut(s) 157, 557, 975, 990, 1786, 2379, 2781, 3166
NmuCI GTSAC 4 cut(s) 1808, 2965, 3485, 3712
NsiI ATGCAT 2 cut(s) 2754, 3440
NspI RCATGY 8 cut(s) 1809, 1959, 2554, 3192, 3259, 3514, 3720, 3915
OliI CACNNNNGTG 2 cut(s) 3476, 3896
PaeI GCATGC 2 cut(s) 2554, 3192
PagI TCATGA 2 cut(s) 589, 2302
PceI AGGCCT 2 cut(s) 2278, 3305
PciI ACATGT 2 cut(s) 1805, 3510
PdmI GAANNNNTTC 5 cut(s) 576, 2084, 2619, 2909, 3804
PleI GAGTC 8 cut(s) 353, 640, 709, 811, 1119, 1298, 2021, 2195
PpsI GAGTC 8 cut(s) 353, 640, 709, 811, 1119, 1298, 2021, 2195
PscI ACATGT 2 cut(s) 1805, 3510
PshBI ATTAAT 1 cut(s) 2448
Psp6I CCWGG 4 cut(s) 2217, 2832, 2996, 3372
PspFI CCCAGC 1 cut(s) 3014
PspGI CCWGG 4 cut(s) 2217, 2832, 2996, 3372
PspN4I GGNNCC 8 cut(s) 157, 557, 975, 990, 1786, 2379, 2781, 3166
PspPI GGNCC 4 cut(s) 28, 866, 2377, 2523
PstI CTGCAG 2 cut(s) 1303, 1918
PstNI CAGNNNCTG 1 cut(s) 1307
PsuI RGATCY 5 cut(s) 155, 988, 2441, 2709, 3164
PvuII CAGCTG 9 cut(s) 88, 146, 608, 1196, 1241, 1645, 1877, 2272, 3404
RseI CAYNNNNRTG 8 cut(s) 394, 443, 1960, 3212, 3254, 3476, 3633, 3896
SalI GTCGAC 1 cut(s) 2198
Sau96I GGNCC 4 cut(s) 28, 866, 2377, 2523
ScaI AGTACT 1 cut(s) 737
SchI GAGTC 8 cut(s) 354, 641, 710, 811, 1120, 1298, 2021, 2195
ScrFI CCNGG 6 cut(s) 1269, 2219, 2834, 2977, 2998, 3374
SduI GDGCHC 4 cut(s) 376, 3298, 3473, 3702
SfaNI GCATC 9 cut(s) 965, 1036, 1271, 1299, 1708, 2377, 2929, 3447, 3646
SfcI CTRYAG 5 cut(s) 13, 1299, 1351, 1914, 2874
SinI GGWCC 4 cut(s) 28, 866, 2377, 2523
SmiMI CAYNNNNRTG 8 cut(s) 394, 443, 1960, 3212, 3254, 3476, 3633, 3896
SmlI CTYRAG 8 cut(s) 905, 1713, 1908, 2405, 3005, 3194, 3461, 3885
SmoI CTYRAG 8 cut(s) 905, 1713, 1908, 2405, 3005, 3194, 3461, 3885
SpeI ACTAGT 1 cut(s) 3919
SphI GCATGC 2 cut(s) 2554, 3192
SseBI AGGCCT 2 cut(s) 2278, 3305
SsiI CCGC 6 cut(s) 838, 1618, 1756, 3055, 3694, 3756
SspI AATATT 1 cut(s) 2160
SspMI CTAG 6 cut(s) 203, 2243, 2489, 3419, 3563, 3920
StuI AGGCCT 2 cut(s) 2278, 3305
StyD4I CCNGG 6 cut(s) 1267, 2217, 2832, 2975, 2996, 3372
StyI CCWWGG 1 cut(s) 2843
TaaI ACNGT 8 cut(s) 64, 126, 454, 1095, 1218, 2077, 2682, 3475
TaiI ACGT 3 cut(s) 933, 2965, 3528
TaqI TCGA 7 cut(s) 246, 842, 1114, 2091, 2199, 2613, 3341
TatI WGTACW 8 cut(s) 735, 1090, 1117, 1964, 2744, 3142, 3265, 3595
TauI GCSGC 3 cut(s) 840, 1621, 3058
TseFI GTSAC 4 cut(s) 1808, 2965, 3485, 3712
Tsp45I GTSAC 4 cut(s) 1808, 2965, 3485, 3712
TspGWI ACGGA 3 cut(s) 487, 1753, 3098
Vha464I CTTAAG 1 cut(s) 3461
VpaK11BI GGWCC 4 cut(s) 28, 866, 2377, 2523
VspI ATTAAT 1 cut(s) 2448
XagI CCTNNNNNAGG 1 cut(s) 3276
XapI RAATTY 4 cut(s) 322, 967, 3317, 3804
XceI RCATGY 8 cut(s) 1809, 1959, 2554, 3192, 3259, 3514, 3720, 3915
XmiI GTMKAC 2 cut(s) 2199, 2479
XmnI GAANNNNTTC 5 cut(s) 576, 2084, 2619, 2909, 3804
XspI CTAG 6 cut(s) 203, 2243, 2489, 3419, 3563, 3920
ZrmI AGTACT 1 cut(s) 737
Zsp2I ATGCAT 2 cut(s) 2754, 3440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.