Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000701

Physical Location & Seq

Genomic Coordinates Forward (+)

17856920 .. 17859610

Gene Structure 2691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G121300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTTTTACCAGAAGAAGAGATCACAAGGCTTTACAGAGTTCGAAGAACCGTGATGCAAATGCTGAGAGATCGGAAATACTTAGTTGGAGATTTTGAGATCAACATGACAAGAGAACAGTTCAAGGCCAAATATGGAGAAAACATGAAAAGGGAAGACCTTACTATCAATAAGACAAAGAGAAATGACAGCACTGATCAGCTTTACGTATTCTTTCCTGAAGAGCCAAAGGTTGGGGTCAAGACCATAAAAACTTACACCAACCGCATGAAATCGGACAATGTAGCCAGAGCAATCTTGGTTACTCAACAAAATATGACTCCCATGGCAAGGACCTGTATAAGCGAAATATCTTCAAAATTCCACATGGAGGTTTTTCAGGAGCCAGAGTTGATGGTGAATGTTACAGAACATGTTCTAGTTCCTGAGCATCAGCTGCTTACAAATGAGGAAAAGAAGACCTTACTGGAGAGGTATACTGTGAAAGAGACACAGCTTCCTCGTATTCAGTTGACCGATCCAGTTGCAAAATATTACGGGCTTAAGCGTGGACAAGTTATGAAGATAATCCGGCCAAGTGAGACTGCAGGACGATACATCACCTACCGTTATGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

207

Amino Acids

24.47

Weight (kDa)

9.46

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22320
fragaria_vesca	FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica	MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica	Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis	pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis	RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata	RLG00000003175 RLG00000029644
rosa_multiflora	Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii	Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa	Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha	Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana	Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	476
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	3 cut(s)	233, 330, 370
AflII	CTTAAG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	2 cut(s)	124, 357
AluBI	AGCT	3 cut(s)	202, 436, 496
AluI	AGCT	3 cut(s)	202, 436, 496
Alw26I	GTCTC	2 cut(s)	482, 575
AlwI	GGATC	1 cut(s)	512
AoxI	GGCC	2 cut(s)	126, 572
ApeKI	GCWGC	1 cut(s)	436
ApoI	RAATTY	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	409, 592
AsuII	TTCGAA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	333
BbsI	GAAGAC	2 cut(s)	162, 464
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	1 cut(s)	388
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	482, 575
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	542
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	384
BmsI	GCATC	2 cut(s)	45, 439
BpiI	GAAGAC	2 cut(s)	162, 464
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	43
BsaAI	YACGTR	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 330, 370
Bse1I	ACTGG	2 cut(s)	471, 521
BseDI	CCNNGG	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	233, 330, 370
BseMII	CTCAG	2 cut(s)	56, 417
BseNI	ACTGG	2 cut(s)	471, 521
BseXI	GCAGC	1 cut(s)	423
BshFI	GGCC	2 cut(s)	128, 574
BsiSI	CCGG	1 cut(s)	571
BslI	CCNNNNNNNGG	3 cut(s)	233, 330, 370
BsmAI	GTCTC	2 cut(s)	482, 575
BsnI	GGCC	2 cut(s)	128, 574
Bsp119I	TTCGAA	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	21, 70, 99, 196, 517
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	2 cut(s)	128, 574
BspCNI	CTCAG	2 cut(s)	57, 418
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	1 cut(s)	512
BspQI	GCTCTTC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	471, 521
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	5 cut(s)	21, 70, 99, 196, 517
BssNAI	GTATAC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	324
Bst1107I	GTATAC	1 cut(s)	477
Bst4CI	ACNGT	4 cut(s)	52, 120, 481, 608
Bst6I	CTCTTC	2 cut(s)	12, 216
BstAFI	CTTAAG	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	436
BstBAI	YACGTR	1 cut(s)	208
BstBI	TTCGAA	1 cut(s)	43
BstDEI	CTNAG	3 cut(s)	65, 82, 426
BstDSI	CCRYGG	1 cut(s)	324
BstKTI	GATC	5 cut(s)	24, 73, 102, 199, 520
BstMAI	GTCTC	2 cut(s)	482, 575
BstMBI	GATC	5 cut(s)	21, 70, 99, 196, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	585
BstSNI	TACGTA	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	2 cut(s)	162, 464
BstZ17I	GTATAC	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	128, 574
BtgI	CCRYGG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	333
CviAII	CATG	6 cut(s)	106, 145, 268, 325, 367, 413
DdeI	CTNAG	3 cut(s)	65, 82, 426
DpnI	GATC	5 cut(s)	23, 72, 101, 198, 519
DpnII	GATC	5 cut(s)	21, 70, 99, 196, 517
EaeI	YGGCCR	1 cut(s)	572
Eam1104I	CTCTTC	2 cut(s)	12, 216
EarI	CTCTTC	2 cut(s)	12, 216
Eco105I	TACGTA	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	6 cut(s)	109, 148, 271, 328, 370, 416
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	6 cut(s)	105, 144, 267, 324, 366, 412
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	476
Fnu4HI	GCNGC	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	1 cut(s)	437
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	128, 574
HapII	CCGG	1 cut(s)	571
Hin1II	CATG	6 cut(s)	109, 148, 271, 328, 370, 416
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	2 cut(s)	409, 592
Hpy166II	GTNNAC	3 cut(s)	477, 513, 551
Hpy188I	TCNGA	2 cut(s)	75, 277
Hpy188III	TCNNGA	4 cut(s)	218, 241, 380, 425
Hpy8I	GTNNAC	3 cut(s)	477, 513, 551
HpyCH4III	ACNGT	4 cut(s)	52, 120, 481, 608
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	58, 527, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	3 cut(s)	65, 82, 426
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	6 cut(s)	109, 148, 271, 328, 370, 416
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	5 cut(s)	21, 70, 99, 196, 517
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	2 cut(s)	45, 439
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	301, 403
MalI	GATC	5 cut(s)	23, 72, 101, 198, 519
MboI	GATC	5 cut(s)	21, 70, 99, 196, 517
MboII	GAAGA	8 cut(s)	26, 29, 57, 167, 233, 345, 469, 574
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	4 cut(s)	364, 442, 465, 510
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	436
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	1 cut(s)	571
MwoI	GCNNNNNNNGC	1 cut(s)	436
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	5 cut(s)	21, 70, 99, 196, 517
NlaIII	CATG	6 cut(s)	109, 148, 271, 328, 370, 416
NlaIV	GGNNCC	1 cut(s)	384
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	43
PciI	ACATGT	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	414
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	438
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	333
PscI	ACATGT	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	333
PspPPI	RGGWCCY	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	436
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	5 cut(s)	21, 70, 99, 196, 517
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	45, 439
SfcI	CTRYAG	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	43
SinI	GGWCC	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SnaBI	TACGTA	1 cut(s)	208
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	265
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	4 cut(s)	52, 120, 481, 608
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	43
TaqII	GACCGA	1 cut(s)	530
TasI	AATT	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	161, 284, 575
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	233
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.