Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001692.1

Orthogroup ID

OG0000701

Physical Location & Seq

Genomic Coordinates Reverse (-)

97409 .. 98782

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001692.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggaggcagcagctttttggacaactgccacagctaatcatcactgggctaacaacctctcagcaactgatgtcacttttgatataatcactaggttagcctatatttctaatataggcggaaagatggttttgacagaagaagaacaagttacgaggctctatagggttcgaaagacagtgttgcaaatgctgaaaggtcaggactatctaattgttgatcatgatctcaacatgacaatgttgcagtttaaaaacaaacatggagagaacatgaaaagggaggaccttactatcaatacaaggaagagaggtgacgagtctgatcaggtatttgatttggtatttagtgttcttgaagtagtattgtttggggtcctaactgatggttgttgtgtaccagatttatgtgtttttcccagacgaaccaaaagttggggtcaagacaatgaagagttacatcacacgcatgaatctggagaatgtgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

163

Amino Acids

18.72

Weight (kDa)

5.31

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22320
fragaria_vesca	FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica	MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica	Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis	pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis	RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata	RLG00000003175 RLG00000029644
rosa_multiflora	Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii	Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa	Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha	Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana	Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	435
AciI	CCGC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	359
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
AluBI	AGCT	2 cut(s)	14, 35
AluI	AGCT	2 cut(s)	14, 35
AlwNI	CAGNNNCTG	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	8, 11
AspS9I	GGNCC	2 cut(s)	286, 376
AsuHPI	GGTGA	1 cut(s)	326
AsuII	TTCGAA	1 cut(s)	172
AvaII	GGWCC	2 cut(s)	286, 376
BbvI	GCAGC	2 cut(s)	20, 23
BccI	CCATC	2 cut(s)	121, 380
BclI	TGATCA	2 cut(s)	220, 325
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	2 cut(s)	9, 12
BlsI	GCNGC	2 cut(s)	10, 13
Bme18I	GGWCC	2 cut(s)	286, 376
BmgT120I	GGNCC	2 cut(s)	286, 376
BmiI	GGNNCC	1 cut(s)	377
BmrI	ACTGGG	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	225
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	20, 23
BslI	CCNNNNNNNGG	1 cut(s)	435
Bsp119I	TTCGAA	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	220, 226, 325
BspACI	CCGC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	3 cut(s)	220, 226, 325
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	302, 447
BstBI	TTCGAA	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	61
BstKTI	GATC	3 cut(s)	223, 229, 328
BstMBI	GATC	3 cut(s)	220, 226, 325
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	20, 23
BtsIMutI	CAGTG	2 cut(s)	43, 186
CaiI	CAGNNNCTG	1 cut(s)	68
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	286, 376
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	5 cut(s)	224, 235, 263, 274, 470
CviJI	RGCY	5 cut(s)	14, 35, 50, 101, 160
CviKI_1	RGCY	5 cut(s)	14, 35, 50, 101, 160
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	3 cut(s)	222, 228, 327
DpnII	GATC	3 cut(s)	220, 226, 325
DraI	TTTAAA	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	302, 447
EarI	CTCTTC	2 cut(s)	302, 447
EciI	GGCGGA	1 cut(s)	135
Eco47I	GGWCC	2 cut(s)	286, 376
EcoO109I	RGGNCCY	2 cut(s)	286, 376
FaeI	CATG	5 cut(s)	227, 238, 266, 277, 473
FatI	CATG	5 cut(s)	223, 234, 262, 273, 469
FbaI	TGATCA	2 cut(s)	220, 325
Fnu4HI	GCNGC	2 cut(s)	9, 12
Fsp4HI	GCNGC	2 cut(s)	9, 12
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	2 cut(s)	9, 12
Hin1II	CATG	5 cut(s)	227, 238, 266, 277, 473
HinfI	GANTC	2 cut(s)	320, 473
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	5 cut(s)	203, 224, 356, 443, 477
Hpy8I	GTNNAC	1 cut(s)	398
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	187, 247
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	5 cut(s)	227, 238, 266, 277, 473
Ksp22I	TGATCA	2 cut(s)	220, 325
Kzo9I	GATC	3 cut(s)	220, 226, 325
LpnPI	CCDG	6 cut(s)	31, 188, 314, 414, 433, 462
Lsp1109I	GCAGC	2 cut(s)	20, 23
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	4 cut(s)	73, 151, 314, 456
MalI	GATC	3 cut(s)	222, 228, 327
MboI	GATC	3 cut(s)	220, 226, 325
MboII	GAAGA	4 cut(s)	152, 155, 319, 464
MluCI	AATT	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	4 cut(s)	68, 150, 277, 305
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	2 cut(s)	239, 468
NdeII	GATC	3 cut(s)	220, 226, 325
NlaIII	CATG	5 cut(s)	227, 238, 266, 277, 473
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	2 cut(s)	73, 314
NspV	TTCGAA	1 cut(s)	172
PagI	TCATGA	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	473
PflMI	CCANNNNNTGG	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	10, 13
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PpuMI	RGGWCCY	2 cut(s)	286, 376
Psp5II	RGGWCCY	2 cut(s)	286, 376
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	2 cut(s)	286, 376
PspPPI	RGGWCCY	2 cut(s)	286, 376
PsrI	GAACNNNNNNTAC	2 cut(s)	336, 368
PstNI	CAGNNNCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	239, 468
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	9, 12
Sau3AI	GATC	3 cut(s)	220, 226, 325
Sau96I	GGNCC	2 cut(s)	286, 376
SchI	GAGTC	1 cut(s)	329
SetI	ASST	8 cut(s)	16, 37, 60, 98, 202, 291, 316, 333
SfcI	CTRYAG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	172
SinI	GGWCC	2 cut(s)	286, 376
SmiMI	CAYNNNNRTG	2 cut(s)	239, 468
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	172
TasI	AATT	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	2 cut(s)	50, 186
TseFI	GTSAC	2 cut(s)	73, 314
TseI	GCWGC	2 cut(s)	8, 11
Tsp45I	GTSAC	2 cut(s)	73, 314
TspDTI	ATGAA	3 cut(s)	290, 465, 486
TspRI	CASTG	2 cut(s)	50, 186
Van91I	CCANNNNNTGG	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	286, 376
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.