DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 924 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 179 |
| AccII | CGCG | 1 cut(s) | 636 |
| AciI | CCGC | 3 cut(s) | 792, 839, 922 |
| AclWI | GGATC | 1 cut(s) | 458 |
| AcoI | YGGCCR | 2 cut(s) | 518, 904 |
| AcyI | GRCGYC | 1 cut(s) | 925 |
| AfaI | GTAC | 2 cut(s) | 308, 422 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 179, 559, 839 |
| AflII | CTTAAG | 2 cut(s) | 488, 916 |
| AgsI | TTSAA | 1 cut(s) | 303 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 542 |
| AjnI | CCWGG | 1 cut(s) | 324 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 162, 194 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 714, 746, 845, 877 |
| AluBI | AGCT | 4 cut(s) | 442, 457, 648, 658 |
| AluI | AGCT | 4 cut(s) | 442, 457, 648, 658 |
| Alw26I | GTCTC | 1 cut(s) | 521 |
| AlwI | GGATC | 1 cut(s) | 458 |
| AoxI | GGCC | 3 cut(s) | 518, 904, 941 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 845, 877 |
| AspLEI | GCGC | 1 cut(s) | 927 |
| AspS9I | GGNCC | 1 cut(s) | 624 |
| AsuHPI | GGTGA | 6 cut(s) | 143, 355, 538, 579, 856, 890 |
| AvaII | GGWCC | 1 cut(s) | 624 |
| BanI | GGYRCC | 1 cut(s) | 924 |
| BbsI | GAAGAC | 1 cut(s) | 410 |
| BccI | CCATC | 3 cut(s) | 289, 572, 740 |
| BceAI | ACGGC | 2 cut(s) | 817, 891 |
| BciT130I | CCWGG | 1 cut(s) | 326 |
| BclI | TGATCA | 2 cut(s) | 37, 142 |
| BcoDI | GTCTC | 1 cut(s) | 521 |
| BfaI | CTAG | 1 cut(s) | 365 |
| BfmI | CTRYAG | 1 cut(s) | 531 |
| BfoI | RGCGCY | 1 cut(s) | 928 |
| BfrI | CTTAAG | 2 cut(s) | 488, 916 |
| BisI | GCNGC | 1 cut(s) | 923 |
| BlpI | GCTNAGC | 1 cut(s) | 828 |
| BlsI | GCNGC | 1 cut(s) | 924 |
| Bme1390I | CCNGG | 1 cut(s) | 326 |
| Bme18I | GGWCC | 1 cut(s) | 624 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 542 |
| BmgT120I | GGNCC | 1 cut(s) | 624 |
| BmiI | GGNNCC | 1 cut(s) | 926 |
| BmrFI | CCNGG | 1 cut(s) | 326 |
| BmsI | GCATC | 2 cut(s) | 385, 640 |
| BpiI | GAAGAC | 1 cut(s) | 410 |
| BpmI | CTGGAG | 2 cut(s) | 434, 644 |
| Bpu10I | CCTNAGC | 1 cut(s) | 372 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 828 |
| BsaBI | GATNNNNATC | 1 cut(s) | 42 |
| BsaHI | GRCGYC | 1 cut(s) | 925 |
| BsaJI | CCNNGG | 1 cut(s) | 901 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 714, 744, 746, 776 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 179, 559, 839 |
| Bse118I | RCCGGY | 1 cut(s) | 927 |
| Bse8I | GATNNNNATC | 1 cut(s) | 42 |
| BseBI | CCWGG | 1 cut(s) | 326 |
| BseDI | CCNNGG | 1 cut(s) | 901 |
| BseJI | GATNNNNATC | 1 cut(s) | 42 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 179, 559, 839 |
| BseMII | CTCAG | 2 cut(s) | 363, 863 |
| BseRI | GAGGAG | 2 cut(s) | 818, 893 |
| Bsh1236I | CGCG | 1 cut(s) | 636 |
| BshFI | GGCC | 3 cut(s) | 520, 906, 943 |
| BshNI | GGYRCC | 1 cut(s) | 924 |
| BsiSI | CCGG | 2 cut(s) | 517, 928 |
| BslFI | GGGAC | 2 cut(s) | 35, 575 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 179, 559, 839 |
| BsmAI | GTCTC | 1 cut(s) | 521 |
| BsmFI | GGGAC | 2 cut(s) | 35, 575 |
| BsnI | GGCC | 3 cut(s) | 520, 906, 943 |
| Bsp143I | GATC | 5 cut(s) | 16, 37, 43, 142, 463 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 828 |
| Bsp68I | TCGCGA | 1 cut(s) | 636 |
| BspACI | CCGC | 3 cut(s) | 792, 839, 922 |
| BspANI | GGCC | 3 cut(s) | 520, 906, 943 |
| BspCNI | CTCAG | 2 cut(s) | 364, 864 |
| BspFNI | CGCG | 1 cut(s) | 636 |
| BspHI | TCATGA | 1 cut(s) | 40 |
| BspLI | GGNNCC | 1 cut(s) | 926 |
| BspMAI | CTGCAG | 1 cut(s) | 535 |
| BspPI | GGATC | 1 cut(s) | 458 |
| BspT107I | GGYRCC | 1 cut(s) | 924 |
| BspTI | CTTAAG | 2 cut(s) | 488, 916 |
| BsrFI | RCCGGY | 1 cut(s) | 927 |
| BssAI | RCCGGY | 1 cut(s) | 927 |
| BssECI | CCNNGG | 1 cut(s) | 901 |
| BssMI | GATC | 5 cut(s) | 16, 37, 43, 142, 463 |
| BssNI | GRCGYC | 1 cut(s) | 925 |
| Bst2UI | CCWGG | 1 cut(s) | 326 |
| Bst4CI | ACNGT | 3 cut(s) | 427, 554, 902 |
| Bst6I | CTCTTC | 3 cut(s) | 119, 191, 610 |
| BstACI | GRCGYC | 1 cut(s) | 925 |
| BstAFI | CTTAAG | 2 cut(s) | 488, 916 |
| BstDEI | CTNAG | 4 cut(s) | 244, 372, 828, 872 |
| BstDSI | CCRYGG | 1 cut(s) | 901 |
| BstFNI | CGCG | 1 cut(s) | 636 |
| BstH2I | RGCGCY | 1 cut(s) | 928 |
| BstHHI | GCGC | 1 cut(s) | 927 |
| BstKTI | GATC | 5 cut(s) | 19, 40, 46, 145, 466 |
| BstMAI | GTCTC | 1 cut(s) | 521 |
| BstMBI | GATC | 5 cut(s) | 16, 37, 43, 142, 463 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 912 |
| BstNI | CCWGG | 1 cut(s) | 326 |
| BstNSI | RCATGY | 4 cut(s) | 362, 710, 770, 890 |
| BstSCI | CCNGG | 1 cut(s) | 324 |
| BstSFI | CTRYAG | 1 cut(s) | 531 |
| BstUI | CGCG | 1 cut(s) | 636 |
| BstV2I | GAAGAC | 1 cut(s) | 410 |
| BsuRI | GGCC | 3 cut(s) | 520, 906, 943 |
| BtgI | CCRYGG | 1 cut(s) | 901 |
| BtgZI | GCGATG | 2 cut(s) | 617, 713 |
| BtsIMutI | CAGTG | 2 cut(s) | 423, 580 |
| BtuMI | TCGCGA | 1 cut(s) | 636 |
| CciI | TCATGA | 1 cut(s) | 40 |
| CfoI | GCGC | 1 cut(s) | 927 |
| Cfr10I | RCCGGY | 1 cut(s) | 927 |
| Cfr13I | GGNCC | 1 cut(s) | 624 |
| Csp6I | GTAC | 2 cut(s) | 307, 421 |
| CviQI | GTAC | 2 cut(s) | 307, 421 |
| DdeI | CTNAG | 4 cut(s) | 244, 372, 828, 872 |
| DinI | GGCGCC | 1 cut(s) | 926 |
| DpnI | GATC | 5 cut(s) | 18, 39, 45, 144, 465 |
| DpnII | GATC | 5 cut(s) | 16, 37, 43, 142, 463 |
| DriI | GACNNNNNGTC | 1 cut(s) | 542 |
| EaeI | YGGCCR | 2 cut(s) | 518, 904 |
| Eam1104I | CTCTTC | 3 cut(s) | 119, 191, 610 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 542 |
| EarI | CTCTTC | 3 cut(s) | 119, 191, 610 |
| Eco47I | GGWCC | 1 cut(s) | 624 |
| EcoRII | CCWGG | 1 cut(s) | 324 |
| EgeI | GGCGCC | 1 cut(s) | 926 |
| EheI | GGCGCC | 1 cut(s) | 926 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 296, 328 |
| FaqI | GGGAC | 2 cut(s) | 35, 575 |
| FauI | CCCGC | 2 cut(s) | 785, 832 |
| FbaI | TGATCA | 2 cut(s) | 37, 142 |
| Fnu4HI | GCNGC | 1 cut(s) | 923 |
| Fsp4HI | GCNGC | 1 cut(s) | 923 |
| FspBI | CTAG | 1 cut(s) | 365 |
| GlaI | GCGC | 1 cut(s) | 926 |
| GluI | GCNGC | 1 cut(s) | 923 |
| GsuI | CTGGAG | 2 cut(s) | 434, 644 |
| HaeII | RGCGCY | 1 cut(s) | 928 |
| HaeIII | GGCC | 3 cut(s) | 520, 906, 943 |
| HapII | CCGG | 2 cut(s) | 517, 928 |
| HhaI | GCGC | 1 cut(s) | 927 |
| Hin1I | GRCGYC | 1 cut(s) | 925 |
| Hin6I | GCGC | 1 cut(s) | 925 |
| HinP1I | GCGC | 1 cut(s) | 925 |
| HinfI | GANTC | 3 cut(s) | 137, 217, 895 |
| HpaII | CCGG | 2 cut(s) | 517, 928 |
| HphI | GGTGA | 6 cut(s) | 143, 355, 538, 579, 856, 890 |
| Hpy166II | GTNNAC | 3 cut(s) | 423, 497, 847 |
| Hpy188I | TCNGA | 3 cut(s) | 30, 142, 147 |
| Hpy8I | GTNNAC | 3 cut(s) | 423, 497, 847 |
| Hpy99I | CGWCG | 2 cut(s) | 641, 838 |
| HpyAV | CCTTC | 1 cut(s) | 114 |
| HpyCH4III | ACNGT | 3 cut(s) | 427, 554, 902 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 275, 473, 533, 706, 766, 886 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 912 |
| HpyF3I | CTNAG | 4 cut(s) | 244, 372, 828, 872 |
| Hsp92I | GRCGYC | 1 cut(s) | 925 |
| HspAI | GCGC | 1 cut(s) | 925 |
| KasI | GGCGCC | 1 cut(s) | 924 |
| Ksp22I | TGATCA | 2 cut(s) | 37, 142 |
| Kzo9I | GATC | 5 cut(s) | 16, 37, 43, 142, 463 |
| LmnI | GCTCC | 1 cut(s) | 663 |
| LweI | GCATC | 2 cut(s) | 385, 640 |
| MaeI | CTAG | 1 cut(s) | 365 |
| MaeIII | GTNAC | 5 cut(s) | 131, 200, 544, 554, 776 |
| MalI | GATC | 5 cut(s) | 18, 39, 45, 144, 465 |
| MboI | GATC | 5 cut(s) | 16, 37, 43, 142, 463 |
| MboII | GAAGA | 5 cut(s) | 136, 208, 415, 520, 597 |
| MfeI | CAATTG | 1 cut(s) | 468 |
| MluCI | AATT | 3 cut(s) | 335, 468, 569 |
| Mly113I | GGCGCC | 1 cut(s) | 925 |
| MlyI | GAGTC | 2 cut(s) | 146, 226 |
| MmeI | TCCRAC | 1 cut(s) | 780 |
| MseI | TTAA | 5 cut(s) | 69, 351, 489, 917, 938 |
| MslI | CAYNNNNRTG | 1 cut(s) | 56 |
| MspA1I | CMGCKG | 1 cut(s) | 457 |
| MspCI | CTTAAG | 2 cut(s) | 488, 916 |
| MspI | CCGG | 2 cut(s) | 517, 928 |
| MspR9I | CCNGG | 1 cut(s) | 326 |
| MunI | CAATTG | 1 cut(s) | 468 |
| MvaI | CCWGG | 1 cut(s) | 326 |
| MvnI | CGCG | 1 cut(s) | 636 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 912 |
| NarI | GGCGCC | 1 cut(s) | 925 |
| NdeII | GATC | 5 cut(s) | 16, 37, 43, 142, 463 |
| NlaIV | GGNNCC | 1 cut(s) | 926 |
| NmuCI | GTSAC | 3 cut(s) | 131, 544, 776 |
| NruI | TCGCGA | 1 cut(s) | 636 |
| NspI | RCATGY | 4 cut(s) | 362, 710, 770, 890 |
| PagI | TCATGA | 1 cut(s) | 40 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 861 |
| PfeI | GAWTC | 1 cut(s) | 895 |
| PflFI | GACNNNGTC | 1 cut(s) | 58 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 179 |
| PfoI | TCCNGGA | 1 cut(s) | 324 |
| PkrI | GCNGC | 1 cut(s) | 924 |
| PleI | GAGTC | 2 cut(s) | 145, 225 |
| PluTI | GGCGCC | 1 cut(s) | 928 |
| PpsI | GAGTC | 2 cut(s) | 145, 225 |
| Psp6I | CCWGG | 1 cut(s) | 324 |
| PspGI | CCWGG | 1 cut(s) | 324 |
| PspN4I | GGNNCC | 1 cut(s) | 926 |
| PspPI | GGNCC | 1 cut(s) | 624 |
| PstI | CTGCAG | 1 cut(s) | 535 |
| PsyI | GACNNNGTC | 1 cut(s) | 58 |
| PvuII | CAGCTG | 1 cut(s) | 457 |
| RruI | TCGCGA | 1 cut(s) | 636 |
| RsaI | GTAC | 2 cut(s) | 308, 422 |
| RsaNI | GTAC | 2 cut(s) | 307, 421 |
| RseI | CAYNNNNRTG | 1 cut(s) | 56 |
| SaqAI | TTAA | 5 cut(s) | 69, 351, 489, 917, 938 |
| SatI | GCNGC | 1 cut(s) | 923 |
| Sau3AI | GATC | 5 cut(s) | 16, 37, 43, 142, 463 |
| Sau96I | GGNCC | 1 cut(s) | 624 |
| SchI | GAGTC | 2 cut(s) | 146, 226 |
| ScrFI | CCNGG | 1 cut(s) | 326 |
| SfaNI | GCATC | 2 cut(s) | 385, 640 |
| SfcI | CTRYAG | 1 cut(s) | 531 |
| SfoI | GGCGCC | 1 cut(s) | 926 |
| SgrAI | CRCCGGYG | 1 cut(s) | 927 |
| SinI | GGWCC | 1 cut(s) | 624 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 56 |
| SmlI | CTYRAG | 2 cut(s) | 488, 916 |
| SmoI | CTYRAG | 2 cut(s) | 488, 916 |
| Sse9I | AATT | 3 cut(s) | 335, 468, 569 |
| SsiI | CCGC | 3 cut(s) | 792, 839, 922 |
| SspDI | GGCGCC | 1 cut(s) | 924 |
| SspI | AATATT | 1 cut(s) | 349 |
| SspMI | CTAG | 1 cut(s) | 365 |
| StyD4I | CCNGG | 1 cut(s) | 324 |
| TaaI | ACNGT | 3 cut(s) | 427, 554, 902 |
| TaqI | TCGA | 1 cut(s) | 864 |
| TasI | AATT | 3 cut(s) | 335, 468, 569 |
| TauI | GCSGC | 1 cut(s) | 925 |
| TfiI | GAWTC | 1 cut(s) | 895 |
| Tru1I | TTAA | 5 cut(s) | 69, 351, 489, 917, 938 |
| Tru9I | TTAA | 5 cut(s) | 69, 351, 489, 917, 938 |
| TscAI | CASTG | 2 cut(s) | 430, 580 |
| TseFI | GTSAC | 3 cut(s) | 131, 544, 776 |
| Tsp45I | GTSAC | 3 cut(s) | 131, 544, 776 |
| TspDTI | ATGAA | 4 cut(s) | 107, 209, 667, 722 |
| TspGWI | ACGGA | 1 cut(s) | 735 |
| TspRI | CASTG | 2 cut(s) | 430, 580 |
| Tth111I | GACNNNGTC | 1 cut(s) | 58 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 179 |
| Vha464I | CTTAAG | 2 cut(s) | 488, 916 |
| VpaK11BI | GGWCC | 1 cut(s) | 624 |
| XceI | RCATGY | 4 cut(s) | 362, 710, 770, 890 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 292, 575 |
| XspI | CTAG | 1 cut(s) | 365 |