DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 86 |
| AccB1I | GGYRCC | 1 cut(s) | 86 |
| AciI | CCGC | 1 cut(s) | 205 |
| AclWI | GGATC | 1 cut(s) | 98 |
| AcuI | CTGAAG | 1 cut(s) | 191 |
| AfaI | GTAC | 2 cut(s) | 88, 93 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 330 |
| AluBI | AGCT | 1 cut(s) | 169 |
| AluI | AGCT | 1 cut(s) | 169 |
| AlwI | GGATC | 1 cut(s) | 98 |
| ApeKI | GCWGC | 1 cut(s) | 372 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 366 |
| Asp718I | GGTACC | 1 cut(s) | 86 |
| AspS9I | GGNCC | 1 cut(s) | 17 |
| AvaII | GGWCC | 1 cut(s) | 17 |
| BanI | GGYRCC | 1 cut(s) | 86 |
| BbsI | GAAGAC | 1 cut(s) | 195 |
| BbvI | GCAGC | 1 cut(s) | 359 |
| BccI | CCATC | 1 cut(s) | 73 |
| BfaI | CTAG | 3 cut(s) | 30, 99, 200 |
| BisI | GCNGC | 1 cut(s) | 373 |
| BlsI | GCNGC | 1 cut(s) | 374 |
| Bme18I | GGWCC | 1 cut(s) | 17 |
| BmgT120I | GGNCC | 1 cut(s) | 17 |
| BmiI | GGNNCC | 1 cut(s) | 88 |
| BpiI | GAAGAC | 1 cut(s) | 195 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 330 |
| Bse3DI | GCAATG | 1 cut(s) | 223 |
| BseGI | GGATG | 1 cut(s) | 286 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 330 |
| BseMI | GCAATG | 1 cut(s) | 223 |
| BseRI | GAGGAG | 1 cut(s) | 262 |
| BseXI | GCAGC | 1 cut(s) | 359 |
| BshNI | GGYRCC | 1 cut(s) | 86 |
| BsiSI | CCGG | 1 cut(s) | 51 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 330 |
| Bsp143I | GATC | 3 cut(s) | 103, 176, 283 |
| BspACI | CCGC | 1 cut(s) | 205 |
| BspLI | GGNNCC | 1 cut(s) | 88 |
| BspPI | GGATC | 1 cut(s) | 98 |
| BspQI | GCTCTTC | 2 cut(s) | 159, 297 |
| BspT107I | GGYRCC | 1 cut(s) | 86 |
| BsrDI | GCAATG | 1 cut(s) | 223 |
| BssMI | GATC | 3 cut(s) | 103, 176, 283 |
| Bst4CI | ACNGT | 1 cut(s) | 91 |
| Bst6I | CTCTTC | 5 cut(s) | 159, 167, 239, 264, 297 |
| BstC8I | GCNNGC | 1 cut(s) | 209 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 328 |
| BstF5I | GGATG | 1 cut(s) | 286 |
| BstKTI | GATC | 3 cut(s) | 106, 179, 286 |
| BstMBI | GATC | 3 cut(s) | 103, 176, 283 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 80, 213 |
| BstNSI | RCATGY | 1 cut(s) | 98 |
| BstV1I | GCAGC | 1 cut(s) | 359 |
| BstV2I | GAAGAC | 1 cut(s) | 195 |
| BtsCI | GGATG | 1 cut(s) | 286 |
| Cac8I | GCNNGC | 1 cut(s) | 209 |
| Cfr13I | GGNCC | 1 cut(s) | 17 |
| Csp6I | GTAC | 2 cut(s) | 87, 92 |
| CviAII | CATG | 1 cut(s) | 95 |
| CviJI | RGCY | 3 cut(s) | 83, 169, 307 |
| CviKI_1 | RGCY | 3 cut(s) | 83, 169, 307 |
| CviQI | GTAC | 2 cut(s) | 87, 92 |
| DpnI | GATC | 3 cut(s) | 105, 178, 285 |
| DpnII | GATC | 3 cut(s) | 103, 176, 283 |
| Eam1104I | CTCTTC | 5 cut(s) | 159, 167, 239, 264, 297 |
| EarI | CTCTTC | 5 cut(s) | 159, 167, 239, 264, 297 |
| Eco32I | GATATC | 1 cut(s) | 63 |
| Eco47I | GGWCC | 1 cut(s) | 17 |
| Eco57I | CTGAAG | 1 cut(s) | 191 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 328 |
| EcoRV | GATATC | 1 cut(s) | 63 |
| FaeI | CATG | 1 cut(s) | 98 |
| FaiI | YATR | 6 cut(s) | 23, 96, 110, 150, 310, 312 |
| FatI | CATG | 1 cut(s) | 94 |
| FauNDI | CATATG | 1 cut(s) | 310 |
| Fnu4HI | GCNGC | 1 cut(s) | 373 |
| FokI | GGATG | 1 cut(s) | 293 |
| Fsp4HI | GCNGC | 1 cut(s) | 373 |
| FspBI | CTAG | 3 cut(s) | 30, 99, 200 |
| GluI | GCNGC | 1 cut(s) | 373 |
| HapII | CCGG | 1 cut(s) | 51 |
| Hin1II | CATG | 1 cut(s) | 98 |
| HinfI | GANTC | 3 cut(s) | 47, 196, 293 |
| HpaII | CCGG | 1 cut(s) | 51 |
| Hpy188I | TCNGA | 2 cut(s) | 181, 292 |
| Hpy188III | TCNNGA | 1 cut(s) | 200 |
| HpyAV | CCTTC | 3 cut(s) | 222, 257, 356 |
| HpyCH4III | ACNGT | 1 cut(s) | 91 |
| HpyCH4V | TGCA | 4 cut(s) | 74, 216, 327, 351 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 80, 213 |
| Hsp92II | CATG | 1 cut(s) | 98 |
| KpnI | GGTACC | 1 cut(s) | 90 |
| Kzo9I | GATC | 3 cut(s) | 103, 176, 283 |
| LguI | GCTCTTC | 2 cut(s) | 159, 297 |
| LpnPI | CCDG | 6 cut(s) | 64, 69, 198, 221, 263, 337 |
| Lsp1109I | GCAGC | 1 cut(s) | 359 |
| MaeI | CTAG | 3 cut(s) | 30, 99, 200 |
| MalI | GATC | 3 cut(s) | 105, 178, 285 |
| MboI | GATC | 3 cut(s) | 103, 176, 283 |
| MboII | GAAGA | 7 cut(s) | 176, 184, 200, 250, 256, 281, 314 |
| MnlI | CCTC | 2 cut(s) | 240, 265 |
| MroXI | GAANNNNTTC | 1 cut(s) | 366 |
| MseI | TTAA | 2 cut(s) | 42, 126 |
| MslI | CAYNNNNRTG | 2 cut(s) | 42, 99 |
| MspI | CCGG | 1 cut(s) | 51 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 80, 213 |
| NdeI | CATATG | 1 cut(s) | 310 |
| NdeII | GATC | 3 cut(s) | 103, 176, 283 |
| NlaIII | CATG | 1 cut(s) | 98 |
| NlaIV | GGNNCC | 1 cut(s) | 88 |
| NspI | RCATGY | 1 cut(s) | 98 |
| PciSI | GCTCTTC | 2 cut(s) | 159, 297 |
| PdmI | GAANNNNTTC | 1 cut(s) | 366 |
| PfeI | GAWTC | 3 cut(s) | 47, 196, 293 |
| PkrI | GCNGC | 1 cut(s) | 374 |
| PspN4I | GGNNCC | 1 cut(s) | 88 |
| PspPI | GGNCC | 1 cut(s) | 17 |
| RsaI | GTAC | 2 cut(s) | 88, 93 |
| RsaNI | GTAC | 2 cut(s) | 87, 92 |
| RseI | CAYNNNNRTG | 2 cut(s) | 42, 99 |
| SapI | GCTCTTC | 2 cut(s) | 159, 297 |
| SaqAI | TTAA | 2 cut(s) | 42, 126 |
| SatI | GCNGC | 1 cut(s) | 373 |
| Sau3AI | GATC | 3 cut(s) | 103, 176, 283 |
| Sau96I | GGNCC | 1 cut(s) | 17 |
| SetI | ASST | 3 cut(s) | 22, 159, 171 |
| SinI | GGWCC | 1 cut(s) | 17 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 42, 99 |
| SsiI | CCGC | 1 cut(s) | 205 |
| SspI | AATATT | 1 cut(s) | 146 |
| SspMI | CTAG | 3 cut(s) | 30, 99, 200 |
| TaaI | ACNGT | 1 cut(s) | 91 |
| TaqI | TCGA | 1 cut(s) | 319 |
| TfiI | GAWTC | 3 cut(s) | 47, 196, 293 |
| Tru1I | TTAA | 2 cut(s) | 42, 126 |
| Tru9I | TTAA | 2 cut(s) | 42, 126 |
| TseI | GCWGC | 1 cut(s) | 372 |
| TspDTI | ATGAA | 5 cut(s) | 17, 135, 234, 257, 276 |
| VpaK11BI | GGWCC | 1 cut(s) | 17 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 328 |
| XbaI | TCTAGA | 1 cut(s) | 199 |
| XceI | RCATGY | 1 cut(s) | 98 |
| XmnI | GAANNNNTTC | 1 cut(s) | 366 |
| XspI | CTAG | 3 cut(s) | 30, 99, 200 |