Rroxscaffold_5G00344600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000701
Physical Location & Seq
Reverse (-)
14738759 .. 14739126
368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344600.1

Sequence Viewer

Length: 249 bp
ATGTGGTGGAGAAGAGGAAACGTGGAATGGAGAGAAGGTGAAAGTGGTGATGAACAGAGAACTCTCCGTCACCGGAAATGTCATGAGAGGAAAGAGAGGGAGCCGGTAGATGGTGAAGTGGGCGTATCCGGTCGAGCAAAGAGGTTGGGTGAAGGTGGAGATGGAGGTGAAGGTGATAGGGGAAGTGGTGGAGGTGGTGGTGGGTGGGAAGGGAGTGGTGGTGTTGGACTCTCAAAATGGCAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.9

Weight (kDa)

6.74

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000701)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22320
fragaria_vesca FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata RLG00000003175 RLG00000029644
rosa_multiflora Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 110
AsuHPI GGTGA 7 cut(s) 50, 59, 62, 125, 161, 179, 185
BccI CCATC 2 cut(s) 104, 155
BciVI GTATCC 1 cut(s) 136
BfaI CTAG 1 cut(s) 247
BfuI GTATCC 1 cut(s) 136
BglII AGATCT 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 102
BsaWI WCCGGW 2 cut(s) 72, 128
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 133
BsiSI CCGG 3 cut(s) 73, 104, 129
BslI CCNNNNNNNGG 1 cut(s) 110
Bsp143I GATC 1 cut(s) 243
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 7
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMCI CGRYCG 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuI GTATCC 1 cut(s) 136
CciI TCATGA 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 103
CviAII CATG 1 cut(s) 83
CviJI RGCY 1 cut(s) 103
CviKI_1 RGCY 1 cut(s) 103
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
FaeI CATG 1 cut(s) 86
FaiI YATR 1 cut(s) 84
FatI CATG 1 cut(s) 82
FspBI CTAG 1 cut(s) 247
HapII CCGG 3 cut(s) 73, 104, 129
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 228
HpaII CCGG 3 cut(s) 73, 104, 129
HphI GGTGA 7 cut(s) 50, 59, 62, 125, 161, 179, 185
Hpy188III TCNNGA 1 cut(s) 83
HpyAV CCTTC 4 cut(s) 29, 146, 164, 203
HpyCH4IV ACGT 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 86, 117, 142
MaeI CTAG 1 cut(s) 247
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 1 cut(s) 24
MflI RGATCY 1 cut(s) 243
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 6 cut(s) 8, 81, 90, 135, 158, 185
MspI CCGG 3 cut(s) 73, 104, 129
NdeII GATC 1 cut(s) 243
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 68
PagI TCATGA 1 cut(s) 82
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 243
Sau3AI GATC 1 cut(s) 243
SchI GAGTC 1 cut(s) 222
SetI ASST 7 cut(s) 24, 40, 146, 157, 169, 175, 196
SgeI CNNG 6 cut(s) 34, 85, 95, 116, 141, 146
SspMI CTAG 1 cut(s) 247
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 133
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 56
XspI CTAG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.