Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001692.1

Orthogroup ID

OG0000701

Physical Location & Seq

Genomic Coordinates Reverse (-)

18528 .. 20870

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001692.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgagctgctttcttcccccagtcccccgccgctttacacagaccagtcacacagcaaagatggttttgacagaagaagaaattactagcctctatagggttcgaaggacagtgatgcaaatgctgaaagattgggactatctagttgttgatcatgatctcaacatgacaatgtcgcagtttaaaaacaaacatggagagaacatgaaaagggaggaccttactatcgatagaaggaagagaggtgacgagtctgatcagatatttgatttgatttatgtgttttttcccgacgaacccaaagttggggtcaagacaatggagagttacatcacacgcatgaatcaggagaatgtgattagagcaatcttagttgctcaacaaaatctgactccttttgcaaagacctccattagtgagatgggttcaaacttcaaagtaccacttggagattttccagaattgttggtgaatattaaagagcatgttctagttcttgagcatcgggttcatgcaaatgaggaatataagactttgctggagaggtacaccgtgaaagaaacacagcttcctcgtattcagctgattgatccaattgaaagatattacgggcttaagcgtggacaagttgtgaagataatccggccgagtgagactgcaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

221

Amino Acids

25.96

Weight (kDa)

7.83

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22320
fragaria_vesca	FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica	MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica	Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis	pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis	RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata	RLG00000003175 RLG00000029644
rosa_multiflora	Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii	Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa	Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha	Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana	Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	28, 31
AclWI	GGATC	1 cut(s)	584
AcoI	YGGCCR	1 cut(s)	644
AfaI	GTAC	2 cut(s)	441, 548
AfiI	CCNNNNNNNGG	3 cut(s)	97, 305, 306
AflII	CTTAAG	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	429, 436, 599
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	3 cut(s)	6, 568, 583
AluI	AGCT	3 cut(s)	6, 568, 583
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	257, 481
AsuII	TTCGAA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	217
BccI	CCATC	2 cut(s)	55, 415
BclI	TGATCA	2 cut(s)	151, 256
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	3 cut(s)	87, 143, 491
BfmI	CTRYAG	2 cut(s)	94, 657
BfrI	CTTAAG	1 cut(s)	614
BisI	GCNGC	2 cut(s)	7, 31
BlsI	GCNGC	2 cut(s)	8, 32
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	2 cut(s)	105, 511
BmuI	ACTGGG	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	560
Bpu14I	TTCGAA	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	518
Bsa29I	ATCGAT	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 305, 306
Bse1I	ACTGG	2 cut(s)	20, 45
Bse8I	GATNNNNATC	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	228
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	3 cut(s)	97, 305, 306
BseNI	ACTGG	2 cut(s)	20, 45
BseX3I	CGGCCG	1 cut(s)	644
Bsh1285I	CGRYCG	1 cut(s)	647
BshFI	GGCC	1 cut(s)	646
BshVI	ATCGAT	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	643
BslFI	GGGAC	2 cut(s)	8, 149
BslI	CCNNNNNNNGG	3 cut(s)	97, 305, 306
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	2 cut(s)	8, 149
BsnI	GGCC	1 cut(s)	646
Bsp119I	TTCGAA	1 cut(s)	103
Bsp143I	GATC	4 cut(s)	151, 157, 256, 589
BspACI	CCGC	2 cut(s)	28, 31
BspANI	GGCC	1 cut(s)	646
BspDI	ATCGAT	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	154
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	1 cut(s)	584
BspT104I	TTCGAA	1 cut(s)	103
BspTI	CTTAAG	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	20, 45
BssMI	GATC	4 cut(s)	151, 157, 256, 589
Bst4CI	ACNGT	2 cut(s)	112, 553
Bst6I	CTCTTC	1 cut(s)	233
BstAFI	CTTAAG	1 cut(s)	614
BstBI	TTCGAA	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	370
BstKTI	GATC	4 cut(s)	154, 160, 259, 592
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	4 cut(s)	151, 157, 256, 589
BstMCI	CGRYCG	1 cut(s)	647
BstNSI	RCATGY	1 cut(s)	488
BstSFI	CTRYAG	2 cut(s)	94, 657
BstZI	CGGCCG	1 cut(s)	644
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	646
BsuTUI	ATCGAT	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	117
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	440, 547
CviAII	CATG	7 cut(s)	155, 166, 194, 205, 340, 485, 512
CviJI	RGCY	6 cut(s)	6, 90, 568, 583, 613, 646
CviKI_1	RGCY	6 cut(s)	6, 90, 568, 583, 613, 646
CviQI	GTAC	2 cut(s)	440, 547
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	4 cut(s)	153, 159, 258, 591
DpnII	GATC	4 cut(s)	151, 157, 256, 589
DraI	TTTAAA	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	644
EagI	CGGCCG	1 cut(s)	644
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
EclXI	CGGCCG	1 cut(s)	644
Eco47I	GGWCC	1 cut(s)	217
Eco52I	CGGCCG	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	217
FaeI	CATG	7 cut(s)	158, 169, 197, 208, 343, 488, 515
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	8, 149
FatI	CATG	7 cut(s)	154, 165, 193, 204, 339, 484, 511
FauI	CCCGC	1 cut(s)	35
FbaI	TGATCA	2 cut(s)	151, 256
Fnu4HI	GCNGC	2 cut(s)	7, 31
Fsp4HI	GCNGC	2 cut(s)	7, 31
FspBI	CTAG	3 cut(s)	87, 143, 491
GluI	GCNGC	2 cut(s)	7, 31
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	1 cut(s)	646
HapII	CCGG	1 cut(s)	643
Hin1II	CATG	7 cut(s)	158, 169, 197, 208, 343, 488, 515
HinfI	GANTC	3 cut(s)	251, 343, 391
HpaII	CCGG	1 cut(s)	643
HphI	GGTGA	2 cut(s)	257, 481
Hpy166II	GTNNAC	2 cut(s)	549, 623
Hpy188I	TCNGA	3 cut(s)	256, 261, 390
Hpy188III	TCNNGA	6 cut(s)	155, 290, 313, 347, 458, 497
Hpy8I	GTNNAC	2 cut(s)	549, 623
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	99, 228
HpyCH4III	ACNGT	2 cut(s)	112, 553
HpyCH4V	TGCA	4 cut(s)	118, 401, 515, 659
HpyF3I	CTNAG	1 cut(s)	370
Hsp92II	CATG	7 cut(s)	158, 169, 197, 208, 343, 488, 515
Ksp22I	TGATCA	2 cut(s)	151, 256
Kzo9I	GATC	4 cut(s)	151, 157, 256, 589
LpnPI	CCDG	7 cut(s)	33, 58, 332, 471, 524, 645, 656
LweI	GCATC	2 cut(s)	105, 511
MaeI	CTAG	3 cut(s)	87, 143, 491
MaeIII	GTNAC	3 cut(s)	47, 245, 326
MalI	GATC	4 cut(s)	153, 159, 258, 591
MboI	GATC	4 cut(s)	151, 157, 256, 589
MboII	GAAGA	5 cut(s)	5, 86, 89, 250, 646
MfeI	CAATTG	1 cut(s)	594
MluCI	AATT	3 cut(s)	81, 461, 594
MlyI	GAGTC	2 cut(s)	260, 385
MnlI	CCTC	7 cut(s)	101, 208, 236, 418, 514, 537, 582
MseI	TTAA	3 cut(s)	183, 477, 615
MslI	CAYNNNNRTG	3 cut(s)	170, 338, 516
MspA1I	CMGCKG	1 cut(s)	583
MspCI	CTTAAG	1 cut(s)	614
MspI	CCGG	1 cut(s)	643
MunI	CAATTG	1 cut(s)	594
NdeII	GATC	4 cut(s)	151, 157, 256, 589
NlaIII	CATG	7 cut(s)	158, 169, 197, 208, 343, 488, 515
NmuCI	GTSAC	2 cut(s)	47, 245
NspI	RCATGY	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	103
PagI	TCATGA	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	343
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	8, 32
PleI	GAGTC	2 cut(s)	259, 385
PpsI	GAGTC	2 cut(s)	259, 385
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	217
PspPPI	RGGWCCY	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	661
PsyI	GACNNNGTC	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	2 cut(s)	441, 548
RsaNI	GTAC	2 cut(s)	440, 547
RseI	CAYNNNNRTG	3 cut(s)	170, 338, 516
SaqAI	TTAA	3 cut(s)	183, 477, 615
SatI	GCNGC	2 cut(s)	7, 31
Sau3AI	GATC	4 cut(s)	151, 157, 256, 589
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	260, 385
SetI	ASST	7 cut(s)	8, 222, 247, 410, 548, 570, 585
SfaNI	GCATC	2 cut(s)	105, 511
SfcI	CTRYAG	2 cut(s)	94, 657
SfuI	TTCGAA	1 cut(s)	103
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	3 cut(s)	170, 338, 516
SmlI	CTYRAG	2 cut(s)	497, 614
SmoI	CTYRAG	2 cut(s)	497, 614
Sse9I	AATT	3 cut(s)	81, 461, 594
SsiI	CCGC	2 cut(s)	28, 31
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	3 cut(s)	87, 143, 491
TaaI	ACNGT	2 cut(s)	112, 553
TaqI	TCGA	2 cut(s)	103, 228
TasI	AATT	3 cut(s)	81, 461, 594
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	3 cut(s)	183, 477, 615
Tru9I	TTAA	3 cut(s)	183, 477, 615
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	2 cut(s)	47, 245
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	2 cut(s)	47, 245
TspDTI	ATGAA	3 cut(s)	221, 356, 500
TspRI	CASTG	1 cut(s)	117
Tth111I	GACNNNGTC	1 cut(s)	172
Vha464I	CTTAAG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	217
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XspI	CTAG	3 cut(s)	87, 143, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.