DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 89 |
| AccIII | TCCGGA | 1 cut(s) | 209 |
| AciI | CCGC | 1 cut(s) | 121 |
| AcyI | GRCGYC | 1 cut(s) | 176 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 89, 226 |
| AflII | CTTAAG | 1 cut(s) | 401 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 1 cut(s) | 352 |
| AluI | AGCT | 1 cut(s) | 352 |
| Alw21I | GWGCWC | 3 cut(s) | 144, 270, 412 |
| Alw26I | GTCTC | 1 cut(s) | 434 |
| Alw44I | GTGCAC | 1 cut(s) | 408 |
| Aor13HI | TCCGGA | 1 cut(s) | 209 |
| AoxI | GGCC | 2 cut(s) | 189, 397 |
| ApaLI | GTGCAC | 1 cut(s) | 408 |
| ApeKI | GCWGC | 1 cut(s) | 349 |
| AsuHPI | GGTGA | 3 cut(s) | 265, 379, 451 |
| BaeGI | GKGCMC | 1 cut(s) | 412 |
| BbsI | GAAGAC | 4 cut(s) | 18, 58, 113, 320 |
| Bbv12I | GWGCWC | 3 cut(s) | 144, 270, 412 |
| BbvI | GCAGC | 1 cut(s) | 361 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 338, 372 |
| BclI | TGATCA | 1 cut(s) | 52 |
| BcoDI | GTCTC | 1 cut(s) | 434 |
| BfaI | CTAG | 1 cut(s) | 275 |
| BfmI | CTRYAG | 1 cut(s) | 444 |
| BfrI | CTTAAG | 1 cut(s) | 401 |
| BisI | GCNGC | 1 cut(s) | 350 |
| BlsI | GCNGC | 1 cut(s) | 351 |
| BpiI | GAAGAC | 4 cut(s) | 18, 58, 113, 320 |
| BpmI | CTGGAG | 2 cut(s) | 257, 344 |
| Bsa29I | ATCGAT | 1 cut(s) | 376 |
| BsaHI | GRCGYC | 1 cut(s) | 176 |
| BsaJI | CCNNGG | 1 cut(s) | 356 |
| BsaWI | WCCGGW | 1 cut(s) | 209 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 89, 226 |
| Bse3DI | GCAATG | 1 cut(s) | 55 |
| BseAI | TCCGGA | 1 cut(s) | 209 |
| BseCI | ATCGAT | 1 cut(s) | 376 |
| BseDI | CCNNGG | 1 cut(s) | 356 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 89, 226 |
| BseMI | GCAATG | 1 cut(s) | 55 |
| BseMII | CTCAG | 1 cut(s) | 157 |
| BseSI | GKGCMC | 1 cut(s) | 412 |
| BseXI | GCAGC | 1 cut(s) | 361 |
| BshFI | GGCC | 2 cut(s) | 191, 399 |
| BshVI | ATCGAT | 1 cut(s) | 376 |
| BsiHKAI | GWGCWC | 3 cut(s) | 144, 270, 412 |
| BsiSI | CCGG | 1 cut(s) | 210 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 89, 226 |
| BsmAI | GTCTC | 1 cut(s) | 434 |
| BsnI | GGCC | 2 cut(s) | 191, 399 |
| Bsp1286I | GDGCHC | 3 cut(s) | 144, 270, 412 |
| Bsp13I | TCCGGA | 1 cut(s) | 209 |
| Bsp143I | GATC | 3 cut(s) | 52, 373, 377 |
| BspACI | CCGC | 1 cut(s) | 121 |
| BspANI | GGCC | 2 cut(s) | 191, 399 |
| BspCNI | CTCAG | 1 cut(s) | 156 |
| BspDI | ATCGAT | 1 cut(s) | 376 |
| BspEI | TCCGGA | 1 cut(s) | 209 |
| BspMAI | CTGCAG | 1 cut(s) | 448 |
| BspTI | CTTAAG | 1 cut(s) | 401 |
| BsrDI | GCAATG | 1 cut(s) | 55 |
| BssECI | CCNNGG | 1 cut(s) | 356 |
| BssMI | GATC | 3 cut(s) | 52, 373, 377 |
| BssNI | GRCGYC | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 2 cut(s) | 337, 467 |
| BstACI | GRCGYC | 1 cut(s) | 176 |
| BstAFI | CTTAAG | 1 cut(s) | 401 |
| BstC8I | GCNNGC | 1 cut(s) | 408 |
| BstDEI | CTNAG | 2 cut(s) | 33, 143 |
| BstKTI | GATC | 3 cut(s) | 55, 376, 380 |
| BstMAI | GTCTC | 1 cut(s) | 434 |
| BstMBI | GATC | 3 cut(s) | 52, 373, 377 |
| BstSFI | CTRYAG | 1 cut(s) | 444 |
| BstSLI | GKGCMC | 1 cut(s) | 412 |
| BstV1I | GCAGC | 1 cut(s) | 361 |
| BstV2I | GAAGAC | 4 cut(s) | 18, 58, 113, 320 |
| Bsu15I | ATCGAT | 1 cut(s) | 376 |
| BsuRI | GGCC | 2 cut(s) | 191, 399 |
| BsuTUI | ATCGAT | 1 cut(s) | 376 |
| BtsIMutI | CAGTG | 2 cut(s) | 205, 333 |
| Cac8I | GCNNGC | 1 cut(s) | 408 |
| ClaI | ATCGAT | 1 cut(s) | 376 |
| CseI | GACGC | 1 cut(s) | 184 |
| CviAII | CATG | 1 cut(s) | 124 |
| CviJI | RGCY | 3 cut(s) | 191, 352, 399 |
| CviKI_1 | RGCY | 3 cut(s) | 191, 352, 399 |
| DdeI | CTNAG | 2 cut(s) | 33, 143 |
| DpnI | GATC | 3 cut(s) | 54, 375, 379 |
| DpnII | GATC | 3 cut(s) | 52, 373, 377 |
| Eco147I | AGGCCT | 1 cut(s) | 191 |
| Eco32I | GATATC | 1 cut(s) | 207 |
| EcoRV | GATATC | 1 cut(s) | 207 |
| FaeI | CATG | 1 cut(s) | 127 |
| FaiI | YATR | 6 cut(s) | 63, 125, 396, 456, 476, 478 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 206, 238 |
| FatI | CATG | 1 cut(s) | 123 |
| FbaI | TGATCA | 1 cut(s) | 52 |
| Fnu4HI | GCNGC | 1 cut(s) | 350 |
| Fsp4HI | GCNGC | 1 cut(s) | 350 |
| FspBI | CTAG | 1 cut(s) | 275 |
| GluI | GCNGC | 1 cut(s) | 350 |
| GsuI | CTGGAG | 2 cut(s) | 257, 344 |
| HaeIII | GGCC | 2 cut(s) | 191, 399 |
| HapII | CCGG | 1 cut(s) | 210 |
| HgaI | GACGC | 1 cut(s) | 184 |
| Hin1I | GRCGYC | 1 cut(s) | 176 |
| Hin1II | CATG | 1 cut(s) | 127 |
| HinfI | GANTC | 1 cut(s) | 361 |
| HpaII | CCGG | 1 cut(s) | 210 |
| HphI | GGTGA | 3 cut(s) | 265, 379, 451 |
| Hpy166II | GTNNAC | 1 cut(s) | 410 |
| Hpy188I | TCNGA | 5 cut(s) | 57, 133, 146, 174, 360 |
| Hpy188III | TCNNGA | 5 cut(s) | 74, 97, 210, 236, 281 |
| Hpy8I | GTNNAC | 1 cut(s) | 410 |
| HpyCH4III | ACNGT | 2 cut(s) | 337, 467 |
| HpyCH4IV | ACGT | 2 cut(s) | 270, 471 |
| HpyCH4V | TGCA | 4 cut(s) | 185, 386, 410, 446 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 143 |
| HpySE526I | ACGT | 2 cut(s) | 270, 471 |
| Hsp92I | GRCGYC | 1 cut(s) | 176 |
| Hsp92II | CATG | 1 cut(s) | 127 |
| Kpn2I | TCCGGA | 1 cut(s) | 209 |
| Ksp22I | TGATCA | 1 cut(s) | 52 |
| Kzo9I | GATC | 3 cut(s) | 52, 373, 377 |
| LmnI | GCTCC | 1 cut(s) | 357 |
| LpnPI | CCDG | 8 cut(s) | 87, 205, 221, 223, 294, 308, 350, 432 |
| Lsp1109I | GCAGC | 1 cut(s) | 361 |
| MaeI | CTAG | 1 cut(s) | 275 |
| MaeII | ACGT | 2 cut(s) | 270, 471 |
| MaeIII | GTNAC | 5 cut(s) | 41, 157, 367, 457, 467 |
| MalI | GATC | 3 cut(s) | 54, 375, 379 |
| MboI | GATC | 3 cut(s) | 52, 373, 377 |
| MboII | GAAGA | 5 cut(s) | 23, 58, 118, 325, 433 |
| MfeI | CAATTG | 1 cut(s) | 381 |
| MhlI | GDGCHC | 3 cut(s) | 144, 270, 412 |
| MluCI | AATT | 3 cut(s) | 245, 381, 426 |
| MmeI | TCCRAC | 1 cut(s) | 111 |
| MnlI | CCTC | 4 cut(s) | 220, 232, 298, 366 |
| MroI | TCCGGA | 1 cut(s) | 209 |
| MseI | TTAA | 3 cut(s) | 261, 339, 402 |
| MspCI | CTTAAG | 1 cut(s) | 401 |
| MspI | CCGG | 1 cut(s) | 210 |
| MunI | CAATTG | 1 cut(s) | 381 |
| NdeII | GATC | 3 cut(s) | 52, 373, 377 |
| NlaIII | CATG | 1 cut(s) | 127 |
| NmuCI | GTSAC | 3 cut(s) | 41, 367, 457 |
| PceI | AGGCCT | 1 cut(s) | 191 |
| PfeI | GAWTC | 1 cut(s) | 361 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 89 |
| PkrI | GCNGC | 1 cut(s) | 351 |
| PstI | CTGCAG | 1 cut(s) | 448 |
| SaqAI | TTAA | 3 cut(s) | 261, 339, 402 |
| SatI | GCNGC | 1 cut(s) | 350 |
| Sau3AI | GATC | 3 cut(s) | 52, 373, 377 |
| SduI | GDGCHC | 3 cut(s) | 144, 270, 412 |
| SetI | ASST | 7 cut(s) | 18, 231, 273, 354, 369, 464, 474 |
| SfcI | CTRYAG | 1 cut(s) | 444 |
| SmlI | CTYRAG | 1 cut(s) | 401 |
| SmoI | CTYRAG | 1 cut(s) | 401 |
| Sse9I | AATT | 3 cut(s) | 245, 381, 426 |
| SseBI | AGGCCT | 1 cut(s) | 191 |
| SsiI | CCGC | 1 cut(s) | 121 |
| SspI | AATATT | 1 cut(s) | 259 |
| SspMI | CTAG | 1 cut(s) | 275 |
| StuI | AGGCCT | 1 cut(s) | 191 |
| TaaI | ACNGT | 2 cut(s) | 337, 467 |
| TaiI | ACGT | 2 cut(s) | 273, 474 |
| TaqI | TCGA | 2 cut(s) | 376, 430 |
| TasI | AATT | 3 cut(s) | 245, 381, 426 |
| TfiI | GAWTC | 1 cut(s) | 361 |
| Tru1I | TTAA | 3 cut(s) | 261, 339, 402 |
| Tru9I | TTAA | 3 cut(s) | 261, 339, 402 |
| TscAI | CASTG | 2 cut(s) | 205, 340 |
| TseFI | GTSAC | 3 cut(s) | 41, 367, 457 |
| TseI | GCWGC | 1 cut(s) | 349 |
| Tsp45I | GTSAC | 3 cut(s) | 41, 367, 457 |
| TspDTI | ATGAA | 3 cut(s) | 17, 119, 140 |
| TspRI | CASTG | 2 cut(s) | 205, 340 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 89 |
| Vha464I | CTTAAG | 1 cut(s) | 401 |
| VneI | GTGCAC | 1 cut(s) | 408 |
| XspI | CTAG | 1 cut(s) | 275 |