Rroxscaffold_3G00238160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000701
Physical Location & Seq
Reverse (-)
26347140 .. 26347445
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238160.1

Sequence Viewer

Length: 306 bp
ATGAACAAAACTCGGCTAGATAAAGAAGAATCTGGTAGCTTGAGAGGAAGTTTGGTTTGTGGAGATGGAGGAGGAAACGTGGAATGGAGAGAAGGTGAAAGTGGTGATGAACAAAGAACTCTCCATCACTGGAAATCTCATGAGAGGAAAGAGAGGGAGCTGGTAGATGGCGAAGTGGGAAGATCTGGTCAAGCAAAGAGGTTGGGTGAAGGTGGAGATGGAGGTAAAGGTGATGGGGGAAGTGGTGGAGGTGGTGGTGGGTGGGATGGGAGTGGTGGTGTTGGACTCTCAAAATGGCAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.51

Weight (kDa)

5.6

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000701)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22320
fragaria_vesca FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata RLG00000003175 RLG00000029644
rosa_multiflora Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 39, 160
AluI AGCT 2 cut(s) 39, 160
AsuHPI GGTGA 4 cut(s) 107, 116, 218, 242
BccI CCATC 6 cut(s) 59, 132, 161, 212, 227, 260
BfaI CTAG 1 cut(s) 17
BglII AGATCT 2 cut(s) 182, 300
BpuEI CTTGAG 1 cut(s) 61
BsaXI ACNNNNNCTCC 6 cut(s) 63, 79, 93, 109, 262, 292
Bse1I ACTGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 271
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 84
Bsp143I GATC 2 cut(s) 182, 300
BspHI TCATGA 1 cut(s) 139
BsrI ACTGG 1 cut(s) 134
BssMI GATC 2 cut(s) 182, 300
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 2 cut(s) 185, 303
BstMBI GATC 2 cut(s) 182, 300
BstX2I RGATCY 2 cut(s) 182, 300
BstYI RGATCY 2 cut(s) 182, 300
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 127
CciI TCATGA 1 cut(s) 139
CviAII CATG 1 cut(s) 140
CviJI RGCY 3 cut(s) 16, 39, 160
CviKI_1 RGCY 3 cut(s) 16, 39, 160
DpnI GATC 2 cut(s) 184, 302
DpnII GATC 2 cut(s) 182, 300
FaeI CATG 1 cut(s) 143
FaiI YATR 1 cut(s) 141
FatI CATG 1 cut(s) 139
FokI GGATG 1 cut(s) 278
FspBI CTAG 1 cut(s) 17
Hin1II CATG 1 cut(s) 143
HinfI GANTC 2 cut(s) 29, 285
HphI GGTGA 4 cut(s) 107, 116, 218, 242
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 86, 203
HpyCH4IV ACGT 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 2 cut(s) 182, 300
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 18, 115, 146, 171
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 78
MalI GATC 2 cut(s) 184, 302
MboI GATC 2 cut(s) 182, 300
MboII GAAGA 2 cut(s) 38, 192
MflI RGATCY 2 cut(s) 182, 300
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 8 cut(s) 38, 62, 65, 138, 147, 192, 215, 242
NdeII GATC 2 cut(s) 182, 300
NlaIII CATG 1 cut(s) 143
PagI TCATGA 1 cut(s) 139
PfeI GAWTC 1 cut(s) 29
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PsuI RGATCY 2 cut(s) 182, 300
Sau3AI GATC 2 cut(s) 182, 300
SchI GAGTC 1 cut(s) 279
SetI ASST 9 cut(s) 41, 81, 97, 162, 203, 214, 226, 232, 253
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
SspMI CTAG 1 cut(s) 17
TaiI ACGT 1 cut(s) 81
TfiI GAWTC 1 cut(s) 29
TscAI CASTG 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 17, 123
TspRI CASTG 1 cut(s) 134
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.