DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 321 |
| AccB1I | GGYRCC | 1 cut(s) | 321 |
| AclWI | GGATC | 2 cut(s) | 267, 290 |
| AfaI | GTAC | 2 cut(s) | 191, 323 |
| AfeI | AGCGCT | 1 cut(s) | 164 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 62 |
| AgsI | TTSAA | 2 cut(s) | 137, 230 |
| AjnI | CCWGG | 1 cut(s) | 207 |
| AlwI | GGATC | 2 cut(s) | 267, 290 |
| Aor51HI | AGCGCT | 1 cut(s) | 164 |
| Asp718I | GGTACC | 1 cut(s) | 321 |
| AspLEI | GCGC | 2 cut(s) | 165, 235 |
| BanI | GGYRCC | 1 cut(s) | 321 |
| BccI | CCATC | 1 cut(s) | 131 |
| BciT130I | CCWGG | 1 cut(s) | 209 |
| BfaI | CTAG | 1 cut(s) | 242 |
| BfoI | RGCGCY | 1 cut(s) | 166 |
| BmcAI | AGTACT | 1 cut(s) | 191 |
| Bme1390I | CCNGG | 1 cut(s) | 209 |
| BmiI | GGNNCC | 1 cut(s) | 323 |
| BmrFI | CCNGG | 1 cut(s) | 209 |
| Bpu10I | CCTNAGC | 1 cut(s) | 249 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 62 |
| BseBI | CCWGG | 1 cut(s) | 209 |
| BseGI | GGATG | 1 cut(s) | 112 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 62 |
| BseMII | CTCAG | 1 cut(s) | 240 |
| BshNI | GGYRCC | 1 cut(s) | 321 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 62 |
| Bsp143I | GATC | 4 cut(s) | 75, 182, 259, 282 |
| BspCNI | CTCAG | 1 cut(s) | 241 |
| BspLI | GGNNCC | 1 cut(s) | 323 |
| BspPI | GGATC | 2 cut(s) | 267, 290 |
| BspT107I | GGYRCC | 1 cut(s) | 321 |
| BssMI | GATC | 4 cut(s) | 75, 182, 259, 282 |
| Bst2UI | CCWGG | 1 cut(s) | 209 |
| Bst4CI | ACNGT | 1 cut(s) | 314 |
| BstDEI | CTNAG | 2 cut(s) | 249, 304 |
| BstF5I | GGATG | 1 cut(s) | 112 |
| BstH2I | RGCGCY | 1 cut(s) | 166 |
| BstHHI | GCGC | 2 cut(s) | 165, 235 |
| BstKTI | GATC | 4 cut(s) | 78, 185, 262, 285 |
| BstMBI | GATC | 4 cut(s) | 75, 182, 259, 282 |
| BstNI | CCWGG | 1 cut(s) | 209 |
| BstNSI | RCATGY | 2 cut(s) | 239, 301 |
| BstSCI | CCNGG | 1 cut(s) | 207 |
| BstX2I | RGATCY | 2 cut(s) | 259, 282 |
| BstYI | RGATCY | 2 cut(s) | 259, 282 |
| BtsCI | GGATG | 1 cut(s) | 112 |
| CfoI | GCGC | 2 cut(s) | 165, 235 |
| Csp6I | GTAC | 2 cut(s) | 190, 322 |
| CviAII | CATG | 3 cut(s) | 127, 236, 298 |
| CviJI | RGCY | 1 cut(s) | 122 |
| CviKI_1 | RGCY | 1 cut(s) | 122 |
| CviQI | GTAC | 2 cut(s) | 190, 322 |
| DdeI | CTNAG | 2 cut(s) | 249, 304 |
| DpnI | GATC | 4 cut(s) | 77, 184, 261, 284 |
| DpnII | GATC | 4 cut(s) | 75, 182, 259, 282 |
| Eco47III | AGCGCT | 1 cut(s) | 164 |
| EcoRII | CCWGG | 1 cut(s) | 207 |
| FaeI | CATG | 3 cut(s) | 130, 239, 301 |
| FaiI | YATR | 5 cut(s) | 36, 128, 237, 255, 299 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 179, 211 |
| FatI | CATG | 3 cut(s) | 126, 235, 297 |
| FokI | GGATG | 1 cut(s) | 119 |
| FspBI | CTAG | 1 cut(s) | 242 |
| GlaI | GCGC | 2 cut(s) | 164, 234 |
| HaeII | RGCGCY | 1 cut(s) | 166 |
| HhaI | GCGC | 2 cut(s) | 165, 235 |
| Hin1II | CATG | 3 cut(s) | 130, 239, 301 |
| Hin6I | GCGC | 2 cut(s) | 163, 233 |
| HinP1I | GCGC | 2 cut(s) | 163, 233 |
| HincII | GTYRAC | 1 cut(s) | 310 |
| HindII | GTYRAC | 1 cut(s) | 310 |
| HinfI | GANTC | 1 cut(s) | 148 |
| HpaI | GTTAAC | 1 cut(s) | 310 |
| Hpy166II | GTNNAC | 1 cut(s) | 310 |
| Hpy188I | TCNGA | 1 cut(s) | 147 |
| Hpy188III | TCNNGA | 5 cut(s) | 70, 79, 104, 137, 248 |
| Hpy8I | GTNNAC | 1 cut(s) | 310 |
| HpyCH4III | ACNGT | 1 cut(s) | 314 |
| HpyCH4V | TGCA | 1 cut(s) | 158 |
| HpyF3I | CTNAG | 2 cut(s) | 249, 304 |
| Hsp92II | CATG | 3 cut(s) | 130, 239, 301 |
| HspAI | GCGC | 2 cut(s) | 163, 233 |
| KpnI | GGTACC | 1 cut(s) | 325 |
| KspAI | GTTAAC | 1 cut(s) | 310 |
| Kzo9I | GATC | 4 cut(s) | 75, 182, 259, 282 |
| LpnPI | CCDG | 6 cut(s) | 60, 89, 194, 221, 261, 265 |
| MaeI | CTAG | 1 cut(s) | 242 |
| MalI | GATC | 4 cut(s) | 77, 184, 261, 284 |
| MboI | GATC | 4 cut(s) | 75, 182, 259, 282 |
| MboII | GAAGA | 2 cut(s) | 34, 227 |
| MflI | RGATCY | 2 cut(s) | 259, 282 |
| MluCI | AATT | 2 cut(s) | 82, 218 |
| MlyI | GAGTC | 1 cut(s) | 142 |
| MnlI | CCTC | 3 cut(s) | 193, 205, 265 |
| MseI | TTAA | 4 cut(s) | 24, 264, 287, 309 |
| MspR9I | CCNGG | 1 cut(s) | 209 |
| MvaI | CCWGG | 1 cut(s) | 209 |
| NdeII | GATC | 4 cut(s) | 75, 182, 259, 282 |
| NlaIII | CATG | 3 cut(s) | 130, 239, 301 |
| NlaIV | GGNNCC | 1 cut(s) | 323 |
| NspI | RCATGY | 2 cut(s) | 239, 301 |
| PfoI | TCCNGGA | 1 cut(s) | 207 |
| PleI | GAGTC | 1 cut(s) | 142 |
| PpsI | GAGTC | 1 cut(s) | 142 |
| Psp6I | CCWGG | 1 cut(s) | 207 |
| PspGI | CCWGG | 1 cut(s) | 207 |
| PspN4I | GGNNCC | 1 cut(s) | 323 |
| PsuI | RGATCY | 2 cut(s) | 259, 282 |
| RsaI | GTAC | 2 cut(s) | 191, 323 |
| RsaNI | GTAC | 2 cut(s) | 190, 322 |
| SaqAI | TTAA | 4 cut(s) | 24, 264, 287, 309 |
| Sau3AI | GATC | 4 cut(s) | 75, 182, 259, 282 |
| ScaI | AGTACT | 1 cut(s) | 191 |
| SchI | GAGTC | 1 cut(s) | 142 |
| ScrFI | CCNGG | 1 cut(s) | 209 |
| SetI | ASST | 1 cut(s) | 204 |
| Sse9I | AATT | 2 cut(s) | 82, 218 |
| SspMI | CTAG | 1 cut(s) | 242 |
| StyD4I | CCNGG | 1 cut(s) | 207 |
| TaaI | ACNGT | 1 cut(s) | 314 |
| TasI | AATT | 2 cut(s) | 82, 218 |
| TatI | WGTACW | 1 cut(s) | 189 |
| Tru1I | TTAA | 4 cut(s) | 24, 264, 287, 309 |
| Tru9I | TTAA | 4 cut(s) | 24, 264, 287, 309 |
| TspDTI | ATGAA | 1 cut(s) | 157 |
| TspGWI | ACGGA | 1 cut(s) | 141 |
| XceI | RCATGY | 2 cut(s) | 239, 301 |
| XspI | CTAG | 1 cut(s) | 242 |
| ZrmI | AGTACT | 1 cut(s) | 191 |