DNA-directed RNA polymerases I, II, and III subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNA_pol_Rpb5_N | PF03871 | 5 - 89 | 1.1e-30 | RNA polymerase Rpb5, N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 233 |
| AclWI | GGATC | 1 cut(s) | 99 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 233 |
| AgsI | TTSAA | 1 cut(s) | 44 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 216, 248 |
| AlwI | GGATC | 1 cut(s) | 99 |
| AspS9I | GGNCC | 1 cut(s) | 157 |
| AsuHPI | GGTGA | 1 cut(s) | 197 |
| AvaII | GGWCC | 1 cut(s) | 157 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BfmI | CTRYAG | 1 cut(s) | 34 |
| Bme18I | GGWCC | 1 cut(s) | 157 |
| BmgT120I | GGNCC | 1 cut(s) | 157 |
| BmsI | GCATC | 1 cut(s) | 45 |
| BsaBI | GATNNNNATC | 1 cut(s) | 96 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 233 |
| Bse8I | GATNNNNATC | 1 cut(s) | 96 |
| BseJI | GATNNNNATC | 1 cut(s) | 96 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 233 |
| BslFI | GGGAC | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 233 |
| BsmFI | GGGAC | 1 cut(s) | 89 |
| Bsp143I | GATC | 4 cut(s) | 70, 91, 97, 196 |
| BspPI | GGATC | 1 cut(s) | 99 |
| BssMI | GATC | 4 cut(s) | 70, 91, 97, 196 |
| Bst4CI | ACNGT | 1 cut(s) | 52 |
| Bst6I | CTCTTC | 1 cut(s) | 245 |
| BstKTI | GATC | 4 cut(s) | 73, 94, 100, 199 |
| BstMBI | GATC | 4 cut(s) | 70, 91, 97, 196 |
| BstNSI | RCATGY | 1 cut(s) | 269 |
| BstSFI | CTRYAG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 1 cut(s) | 57 |
| Cfr13I | GGNCC | 1 cut(s) | 157 |
| CviAII | CATG | 5 cut(s) | 106, 134, 145, 266, 270 |
| CviJI | RGCY | 1 cut(s) | 31 |
| CviKI_1 | RGCY | 1 cut(s) | 31 |
| DpnI | GATC | 4 cut(s) | 72, 93, 99, 198 |
| DpnII | GATC | 4 cut(s) | 70, 91, 97, 196 |
| DraI | TTTAAA | 1 cut(s) | 124 |
| Eam1104I | CTCTTC | 1 cut(s) | 245 |
| EarI | CTCTTC | 1 cut(s) | 245 |
| Eco47I | GGWCC | 1 cut(s) | 157 |
| EcoO109I | RGGNCCY | 1 cut(s) | 157 |
| EcoT22I | ATGCAT | 1 cut(s) | 271 |
| FaeI | CATG | 5 cut(s) | 109, 137, 148, 269, 273 |
| FaiI | YATR | 8 cut(s) | 36, 107, 135, 146, 207, 260, 267, 271 |
| FaqI | GGGAC | 1 cut(s) | 89 |
| FatI | CATG | 5 cut(s) | 105, 133, 144, 265, 269 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| Hin1II | CATG | 5 cut(s) | 109, 137, 148, 269, 273 |
| HinfI | GANTC | 1 cut(s) | 191 |
| HphI | GGTGA | 1 cut(s) | 197 |
| Hpy188I | TCNGA | 2 cut(s) | 196, 201 |
| Hpy188III | TCNNGA | 3 cut(s) | 74, 95, 241 |
| HpyAV | CCTTC | 2 cut(s) | 168, 172 |
| HpyCH4III | ACNGT | 1 cut(s) | 52 |
| HpyCH4V | TGCA | 2 cut(s) | 58, 269 |
| Hsp92II | CATG | 5 cut(s) | 109, 137, 148, 269, 273 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| Kzo9I | GATC | 4 cut(s) | 70, 91, 97, 196 |
| LpnPI | CCDG | 1 cut(s) | 231 |
| LweI | GCATC | 1 cut(s) | 45 |
| MaeIII | GTNAC | 2 cut(s) | 185, 254 |
| MalI | GATC | 4 cut(s) | 72, 93, 99, 198 |
| MboI | GATC | 4 cut(s) | 70, 91, 97, 196 |
| MboII | GAAGA | 3 cut(s) | 26, 29, 262 |
| MluCI | AATT | 2 cut(s) | 21, 84 |
| MlyI | GAGTC | 1 cut(s) | 200 |
| MnlI | CCTC | 3 cut(s) | 21, 148, 176 |
| Mph1103I | ATGCAT | 1 cut(s) | 271 |
| MseI | TTAA | 1 cut(s) | 123 |
| MslI | CAYNNNNRTG | 2 cut(s) | 110, 268 |
| NdeII | GATC | 4 cut(s) | 70, 91, 97, 196 |
| NlaIII | CATG | 5 cut(s) | 109, 137, 148, 269, 273 |
| NmuCI | GTSAC | 1 cut(s) | 185 |
| NsiI | ATGCAT | 1 cut(s) | 271 |
| NspI | RCATGY | 1 cut(s) | 269 |
| PflFI | GACNNNGTC | 1 cut(s) | 112 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 233 |
| PleI | GAGTC | 1 cut(s) | 199 |
| PpsI | GAGTC | 1 cut(s) | 199 |
| PpuMI | RGGWCCY | 1 cut(s) | 157 |
| Psp5II | RGGWCCY | 1 cut(s) | 157 |
| PspPI | GGNCC | 1 cut(s) | 157 |
| PspPPI | RGGWCCY | 1 cut(s) | 157 |
| PsyI | GACNNNGTC | 1 cut(s) | 112 |
| RseI | CAYNNNNRTG | 2 cut(s) | 110, 268 |
| SaqAI | TTAA | 1 cut(s) | 123 |
| Sau3AI | GATC | 4 cut(s) | 70, 91, 97, 196 |
| Sau96I | GGNCC | 1 cut(s) | 157 |
| SchI | GAGTC | 1 cut(s) | 200 |
| SetI | ASST | 3 cut(s) | 162, 187, 234 |
| SfaNI | GCATC | 1 cut(s) | 45 |
| SfcI | CTRYAG | 1 cut(s) | 34 |
| SgeI | CNNG | 9 cut(s) | 39, 86, 107, 118, 146, 157, 202, 230, 253 |
| SinI | GGWCC | 1 cut(s) | 157 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 110, 268 |
| Sse9I | AATT | 2 cut(s) | 21, 84 |
| TaaI | ACNGT | 1 cut(s) | 52 |
| TasI | AATT | 2 cut(s) | 21, 84 |
| Tru1I | TTAA | 1 cut(s) | 123 |
| Tru9I | TTAA | 1 cut(s) | 123 |
| TscAI | CASTG | 1 cut(s) | 57 |
| TseFI | GTSAC | 1 cut(s) | 185 |
| Tsp45I | GTSAC | 1 cut(s) | 185 |
| TspDTI | ATGAA | 2 cut(s) | 161, 263 |
| TspGWI | ACGGA | 1 cut(s) | 26 |
| TspRI | CASTG | 1 cut(s) | 57 |
| Tth111I | GACNNNGTC | 1 cut(s) | 112 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 233 |
| VpaK11BI | GGWCC | 1 cut(s) | 157 |
| XceI | RCATGY | 1 cut(s) | 269 |
| Zsp2I | ATGCAT | 1 cut(s) | 271 |