DNA-directed RNA polymerases I, II, and III subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 50 - 119 | 4.6e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 94 |
| AfaI | GTAC | 3 cut(s) | 64, 92, 121 |
| AgsI | TTSAA | 2 cut(s) | 142, 272 |
| AjnI | CCWGG | 1 cut(s) | 111 |
| AluBI | AGCT | 1 cut(s) | 311 |
| AluI | AGCT | 1 cut(s) | 311 |
| Alw26I | GTCTC | 1 cut(s) | 167 |
| ApeKI | GCWGC | 1 cut(s) | 230 |
| AspLEI | GCGC | 1 cut(s) | 268 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| BanII | GRGCYC | 1 cut(s) | 303 |
| BbvI | GCAGC | 1 cut(s) | 217 |
| BccI | CCATC | 1 cut(s) | 149 |
| BciT130I | CCWGG | 1 cut(s) | 113 |
| BcoDI | GTCTC | 1 cut(s) | 167 |
| BfaI | CTAG | 1 cut(s) | 101 |
| BfmI | CTRYAG | 1 cut(s) | 195 |
| BisI | GCNGC | 1 cut(s) | 231 |
| BlsI | GCNGC | 1 cut(s) | 232 |
| Bme1390I | CCNGG | 1 cut(s) | 113 |
| BmiI | GGNNCC | 1 cut(s) | 302 |
| BmrFI | CCNGG | 1 cut(s) | 113 |
| BpmI | CTGGAG | 1 cut(s) | 134 |
| BsaJI | CCNNGG | 1 cut(s) | 282 |
| Bse1I | ACTGG | 1 cut(s) | 181 |
| BseBI | CCWGG | 1 cut(s) | 113 |
| BseDI | CCNNGG | 1 cut(s) | 282 |
| BseGI | GGATG | 1 cut(s) | 160 |
| BseNI | ACTGG | 1 cut(s) | 181 |
| BseXI | GCAGC | 1 cut(s) | 217 |
| BseYI | CCCAGC | 1 cut(s) | 296 |
| BsmAI | GTCTC | 1 cut(s) | 167 |
| Bsp1286I | GDGCHC | 1 cut(s) | 303 |
| BspACI | CCGC | 1 cut(s) | 94 |
| BspLI | GGNNCC | 1 cut(s) | 302 |
| BsrI | ACTGG | 1 cut(s) | 181 |
| BssECI | CCNNGG | 1 cut(s) | 282 |
| Bst2UI | CCWGG | 1 cut(s) | 113 |
| BstF5I | GGATG | 1 cut(s) | 160 |
| BstHHI | GCGC | 1 cut(s) | 268 |
| BstMAI | GTCTC | 1 cut(s) | 167 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 236, 263, 293 |
| BstNI | CCWGG | 1 cut(s) | 113 |
| BstSCI | CCNGG | 1 cut(s) | 111 |
| BstSFI | CTRYAG | 1 cut(s) | 195 |
| BstV1I | GCAGC | 1 cut(s) | 217 |
| BtsCI | GGATG | 1 cut(s) | 160 |
| CfoI | GCGC | 1 cut(s) | 268 |
| Csp6I | GTAC | 3 cut(s) | 63, 91, 120 |
| CviAII | CATG | 1 cut(s) | 317 |
| CviJI | RGCY | 6 cut(s) | 194, 230, 281, 287, 301, 311 |
| CviKI_1 | RGCY | 6 cut(s) | 194, 230, 281, 287, 301, 311 |
| CviQI | GTAC | 3 cut(s) | 63, 91, 120 |
| Eco24I | GRGCYC | 1 cut(s) | 303 |
| EcoRII | CCWGG | 1 cut(s) | 111 |
| EcoT38I | GRGCYC | 1 cut(s) | 303 |
| FaeI | CATG | 1 cut(s) | 320 |
| FaiI | YATR | 4 cut(s) | 79, 163, 314, 318 |
| FatI | CATG | 1 cut(s) | 316 |
| Fnu4HI | GCNGC | 1 cut(s) | 231 |
| FokI | GGATG | 1 cut(s) | 167 |
| FriOI | GRGCYC | 1 cut(s) | 303 |
| Fsp4HI | GCNGC | 1 cut(s) | 231 |
| FspBI | CTAG | 1 cut(s) | 101 |
| GlaI | GCGC | 1 cut(s) | 267 |
| GluI | GCNGC | 1 cut(s) | 231 |
| GsaI | CCCAGC | 1 cut(s) | 300 |
| GsuI | CTGGAG | 1 cut(s) | 134 |
| HhaI | GCGC | 1 cut(s) | 268 |
| Hin1II | CATG | 1 cut(s) | 320 |
| Hin6I | GCGC | 1 cut(s) | 266 |
| HinP1I | GCGC | 1 cut(s) | 266 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy188I | TCNGA | 1 cut(s) | 58 |
| Hpy188III | TCNNGA | 2 cut(s) | 27, 84 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| HpyAV | CCTTC | 3 cut(s) | 24, 136, 314 |
| HpyCH4IV | ACGT | 1 cut(s) | 150 |
| HpyCH4V | TGCA | 2 cut(s) | 161, 225 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 236, 263, 293 |
| HpySE526I | ACGT | 1 cut(s) | 150 |
| Hsp92II | CATG | 1 cut(s) | 320 |
| HspAI | GCGC | 1 cut(s) | 266 |
| LmnI | GCTCC | 2 cut(s) | 306, 359 |
| LpnPI | CCDG | 9 cut(s) | 12, 57, 69, 86, 98, 125, 162, 211, 282 |
| Lsp1109I | GCAGC | 1 cut(s) | 217 |
| MaeI | CTAG | 1 cut(s) | 101 |
| MaeII | ACGT | 1 cut(s) | 150 |
| MaeIII | GTNAC | 1 cut(s) | 38 |
| MboII | GAAGA | 1 cut(s) | 147 |
| MfeI | CAATTG | 1 cut(s) | 166 |
| MhlI | GDGCHC | 1 cut(s) | 303 |
| MluCI | AATT | 1 cut(s) | 166 |
| MmeI | TCCRAC | 1 cut(s) | 321 |
| MnlI | CCTC | 3 cut(s) | 52, 109, 277 |
| MslI | CAYNNNNRTG | 1 cut(s) | 45 |
| MspR9I | CCNGG | 1 cut(s) | 113 |
| MunI | CAATTG | 1 cut(s) | 166 |
| MvaI | CCWGG | 1 cut(s) | 113 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 236, 263, 293 |
| NlaIII | CATG | 1 cut(s) | 320 |
| NlaIV | GGNNCC | 1 cut(s) | 302 |
| NmeAIII | GCCGAG | 1 cut(s) | 307 |
| NmuCI | GTSAC | 1 cut(s) | 38 |
| PkrI | GCNGC | 1 cut(s) | 232 |
| Psp6I | CCWGG | 1 cut(s) | 111 |
| PspFI | CCCAGC | 1 cut(s) | 296 |
| PspGI | CCWGG | 1 cut(s) | 111 |
| PspN4I | GGNNCC | 1 cut(s) | 302 |
| RsaI | GTAC | 3 cut(s) | 64, 92, 121 |
| RsaNI | GTAC | 3 cut(s) | 63, 91, 120 |
| RseI | CAYNNNNRTG | 1 cut(s) | 45 |
| SatI | GCNGC | 1 cut(s) | 231 |
| ScrFI | CCNGG | 1 cut(s) | 113 |
| SduI | GDGCHC | 1 cut(s) | 303 |
| SetI | ASST | 7 cut(s) | 35, 114, 147, 153, 253, 313, 336 |
| SfcI | CTRYAG | 1 cut(s) | 195 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 45 |
| Sse9I | AATT | 1 cut(s) | 166 |
| SsiI | CCGC | 1 cut(s) | 94 |
| SspMI | CTAG | 1 cut(s) | 101 |
| StyD4I | CCNGG | 1 cut(s) | 111 |
| TaiI | ACGT | 1 cut(s) | 153 |
| TaqI | TCGA | 1 cut(s) | 276 |
| TasI | AATT | 1 cut(s) | 166 |
| TseFI | GTSAC | 1 cut(s) | 38 |
| TseI | GCWGC | 1 cut(s) | 230 |
| Tsp45I | GTSAC | 1 cut(s) | 38 |
| TspDTI | ATGAA | 1 cut(s) | 333 |
| TspGWI | ACGGA | 1 cut(s) | 281 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 80 |
| XspI | CTAG | 1 cut(s) | 101 |