DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 233 |
| AccII | CGCG | 1 cut(s) | 549 |
| AciI | CCGC | 1 cut(s) | 265 |
| AclWI | GGATC | 1 cut(s) | 512 |
| AcyI | GRCGYC | 1 cut(s) | 320 |
| AfaI | GTAC | 1 cut(s) | 476 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| AflII | CTTAAG | 1 cut(s) | 542 |
| AflIII | ACRYGT | 2 cut(s) | 105, 412 |
| AgsI | TTSAA | 1 cut(s) | 124 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 216, 248 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 269, 301 |
| AluBI | AGCT | 1 cut(s) | 496 |
| AluI | AGCT | 1 cut(s) | 496 |
| Alw26I | GTCTC | 1 cut(s) | 575 |
| AlwI | GGATC | 1 cut(s) | 512 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 284, 414 |
| AspLEI | GCGC | 2 cut(s) | 549, 551 |
| AsuHPI | GGTGA | 3 cut(s) | 409, 523, 592 |
| BbsI | GAAGAC | 3 cut(s) | 202, 257, 464 |
| BcoDI | GTCTC | 1 cut(s) | 575 |
| BfaI | CTAG | 1 cut(s) | 419 |
| BfmI | CTRYAG | 1 cut(s) | 585 |
| BfrI | CTTAAG | 1 cut(s) | 542 |
| BglII | AGATCT | 1 cut(s) | 157 |
| BmsI | GCATC | 2 cut(s) | 45, 439 |
| BpiI | GAAGAC | 3 cut(s) | 202, 257, 464 |
| BpmI | CTGGAG | 2 cut(s) | 401, 488 |
| Bpu10I | CCTNAGC | 1 cut(s) | 426 |
| BsaHI | GRCGYC | 1 cut(s) | 320 |
| BsaJI | CCNNGG | 1 cut(s) | 500 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 269, 299 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| BseDI | CCNNGG | 1 cut(s) | 500 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| BseMII | CTCAG | 1 cut(s) | 417 |
| BsePI | GCGCGC | 1 cut(s) | 547 |
| Bsh1236I | CGCG | 1 cut(s) | 549 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| BsmAI | GTCTC | 1 cut(s) | 575 |
| Bsp143I | GATC | 5 cut(s) | 70, 99, 157, 196, 517 |
| BspACI | CCGC | 1 cut(s) | 265 |
| BspCNI | CTCAG | 1 cut(s) | 418 |
| BspFNI | CGCG | 1 cut(s) | 549 |
| BspMAI | CTGCAG | 1 cut(s) | 589 |
| BspPI | GGATC | 1 cut(s) | 512 |
| BspTI | CTTAAG | 1 cut(s) | 542 |
| BssECI | CCNNGG | 1 cut(s) | 500 |
| BssHII | GCGCGC | 1 cut(s) | 547 |
| BssMI | GATC | 5 cut(s) | 70, 99, 157, 196, 517 |
| BssNI | GRCGYC | 1 cut(s) | 320 |
| Bst4CI | ACNGT | 4 cut(s) | 52, 120, 481, 608 |
| BstACI | GRCGYC | 1 cut(s) | 320 |
| BstAFI | CTTAAG | 1 cut(s) | 542 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 436 |
| BstC8I | GCNNGC | 1 cut(s) | 549 |
| BstDEI | CTNAG | 2 cut(s) | 177, 426 |
| BstFNI | CGCG | 1 cut(s) | 549 |
| BstHHI | GCGC | 2 cut(s) | 549, 551 |
| BstKTI | GATC | 5 cut(s) | 73, 102, 160, 199, 520 |
| BstMAI | GTCTC | 1 cut(s) | 575 |
| BstMBI | GATC | 5 cut(s) | 70, 99, 157, 196, 517 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 436 |
| BstNSI | RCATGY | 1 cut(s) | 109 |
| BstSFI | CTRYAG | 1 cut(s) | 585 |
| BstUI | CGCG | 1 cut(s) | 549 |
| BstV2I | GAAGAC | 3 cut(s) | 202, 257, 464 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| BtsIMutI | CAGTG | 2 cut(s) | 349, 477 |
| Cac8I | GCNNGC | 1 cut(s) | 549 |
| CfoI | GCGC | 2 cut(s) | 549, 551 |
| CseI | GACGC | 1 cut(s) | 328 |
| Csp6I | GTAC | 1 cut(s) | 475 |
| CviAII | CATG | 3 cut(s) | 106, 145, 268 |
| CviJI | RGCY | 3 cut(s) | 31, 496, 541 |
| CviKI_1 | RGCY | 3 cut(s) | 31, 496, 541 |
| CviQI | GTAC | 1 cut(s) | 475 |
| DdeI | CTNAG | 2 cut(s) | 177, 426 |
| DpnI | GATC | 5 cut(s) | 72, 101, 159, 198, 519 |
| DpnII | GATC | 5 cut(s) | 70, 99, 157, 196, 517 |
| Eco32I | GATATC | 1 cut(s) | 351 |
| EcoRV | GATATC | 1 cut(s) | 351 |
| FaeI | CATG | 3 cut(s) | 109, 148, 271 |
| FaiI | YATR | 8 cut(s) | 107, 146, 207, 258, 269, 597, 617, 619 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 350, 382 |
| FatI | CATG | 3 cut(s) | 105, 144, 267 |
| FspBI | CTAG | 1 cut(s) | 419 |
| GlaI | GCGC | 2 cut(s) | 548, 550 |
| GsuI | CTGGAG | 2 cut(s) | 401, 488 |
| HgaI | GACGC | 1 cut(s) | 328 |
| HhaI | GCGC | 2 cut(s) | 549, 551 |
| Hin1I | GRCGYC | 1 cut(s) | 320 |
| Hin1II | CATG | 3 cut(s) | 109, 148, 271 |
| Hin6I | GCGC | 2 cut(s) | 547, 549 |
| HinP1I | GCGC | 2 cut(s) | 547, 549 |
| HinfI | GANTC | 2 cut(s) | 39, 505 |
| HphI | GGTGA | 3 cut(s) | 409, 523, 592 |
| Hpy166II | GTNNAC | 1 cut(s) | 477 |
| Hpy188I | TCNGA | 7 cut(s) | 44, 75, 201, 277, 290, 318, 504 |
| Hpy188III | TCNNGA | 5 cut(s) | 218, 241, 354, 380, 425 |
| Hpy8I | GTNNAC | 1 cut(s) | 477 |
| HpyCH4III | ACNGT | 4 cut(s) | 52, 120, 481, 608 |
| HpyCH4IV | ACGT | 2 cut(s) | 414, 612 |
| HpyCH4V | TGCA | 3 cut(s) | 58, 329, 587 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 436 |
| HpyF3I | CTNAG | 2 cut(s) | 177, 426 |
| HpySE526I | ACGT | 2 cut(s) | 414, 612 |
| Hsp92I | GRCGYC | 1 cut(s) | 320 |
| Hsp92II | CATG | 3 cut(s) | 109, 148, 271 |
| HspAI | GCGC | 2 cut(s) | 547, 549 |
| Kzo9I | GATC | 5 cut(s) | 70, 99, 157, 196, 517 |
| LmnI | GCTCC | 1 cut(s) | 501 |
| LpnPI | CCDG | 7 cut(s) | 231, 349, 365, 438, 452, 494, 573 |
| LweI | GCATC | 2 cut(s) | 45, 439 |
| MaeI | CTAG | 1 cut(s) | 419 |
| MaeII | ACGT | 2 cut(s) | 414, 612 |
| MaeIII | GTNAC | 5 cut(s) | 185, 301, 511, 598, 608 |
| MalI | GATC | 5 cut(s) | 72, 101, 159, 198, 519 |
| MboI | GATC | 5 cut(s) | 70, 99, 157, 196, 517 |
| MboII | GAAGA | 7 cut(s) | 26, 29, 167, 202, 262, 469, 574 |
| MfeI | CAATTG | 1 cut(s) | 522 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MluCI | AATT | 4 cut(s) | 76, 389, 522, 567 |
| MlyI | GAGTC | 1 cut(s) | 48 |
| MmeI | TCCRAC | 1 cut(s) | 67 |
| MnlI | CCTC | 5 cut(s) | 364, 376, 442, 465, 510 |
| MroXI | GAANNNNTTC | 2 cut(s) | 284, 414 |
| MseI | TTAA | 2 cut(s) | 8, 543 |
| MspCI | CTTAAG | 1 cut(s) | 542 |
| MunI | CAATTG | 1 cut(s) | 522 |
| MvnI | CGCG | 1 cut(s) | 549 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 436 |
| NdeII | GATC | 5 cut(s) | 70, 99, 157, 196, 517 |
| NlaIII | CATG | 3 cut(s) | 109, 148, 271 |
| NmuCI | GTSAC | 3 cut(s) | 185, 511, 598 |
| NspI | RCATGY | 1 cut(s) | 109 |
| PauI | GCGCGC | 1 cut(s) | 547 |
| PciI | ACATGT | 1 cut(s) | 105 |
| PdmI | GAANNNNTTC | 2 cut(s) | 284, 414 |
| PfeI | GAWTC | 1 cut(s) | 505 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 233 |
| PleI | GAGTC | 1 cut(s) | 47 |
| PpsI | GAGTC | 1 cut(s) | 47 |
| PscI | ACATGT | 1 cut(s) | 105 |
| PstI | CTGCAG | 1 cut(s) | 589 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| PteI | GCGCGC | 1 cut(s) | 547 |
| RsaI | GTAC | 1 cut(s) | 476 |
| RsaNI | GTAC | 1 cut(s) | 475 |
| SaqAI | TTAA | 2 cut(s) | 8, 543 |
| Sau3AI | GATC | 5 cut(s) | 70, 99, 157, 196, 517 |
| SchI | GAGTC | 1 cut(s) | 48 |
| SetI | ASST | 9 cut(s) | 234, 338, 375, 417, 476, 498, 513, 605, 615 |
| SfaNI | GCATC | 2 cut(s) | 45, 439 |
| SfcI | CTRYAG | 1 cut(s) | 585 |
| SmlI | CTYRAG | 1 cut(s) | 542 |
| SmoI | CTYRAG | 1 cut(s) | 542 |
| Sse9I | AATT | 4 cut(s) | 76, 389, 522, 567 |
| SsiI | CCGC | 1 cut(s) | 265 |
| SspMI | CTAG | 1 cut(s) | 419 |
| TaaI | ACNGT | 4 cut(s) | 52, 120, 481, 608 |
| TaiI | ACGT | 2 cut(s) | 417, 615 |
| TaqI | TCGA | 1 cut(s) | 571 |
| TasI | AATT | 4 cut(s) | 76, 389, 522, 567 |
| TfiI | GAWTC | 1 cut(s) | 505 |
| Tru1I | TTAA | 2 cut(s) | 8, 543 |
| Tru9I | TTAA | 2 cut(s) | 8, 543 |
| TscAI | CASTG | 2 cut(s) | 349, 484 |
| TseFI | GTSAC | 3 cut(s) | 185, 511, 598 |
| Tsp45I | GTSAC | 3 cut(s) | 185, 511, 598 |
| TspDTI | ATGAA | 3 cut(s) | 161, 263, 284 |
| TspGWI | ACGGA | 1 cut(s) | 150 |
| TspRI | CASTG | 2 cut(s) | 349, 484 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 233 |
| Vha464I | CTTAAG | 1 cut(s) | 542 |
| XceI | RCATGY | 1 cut(s) | 109 |
| XmnI | GAANNNNTTC | 2 cut(s) | 284, 414 |
| XspI | CTAG | 1 cut(s) | 419 |