Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008115.1

Orthogroup ID

OG0000701

Physical Location & Seq

Genomic Coordinates Reverse (-)

45527 .. 46703

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008115.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgcaaatgctgaaagatcgggactatctaattgttgatcatgatctcaacatgacaatgtcacagtttaaaaacaaacatggagagaacatgaagagggaggaccgtactatcaatagaaggaagagagatgacaagtctgatcagatttatgtgtttttccctgacgaaccaaaagttggggccaagacaatgaagagttgcatcacacgcatgaatcaggagaatctaattagagcaatcttagttgttcaacaaaatctgagtccttttgcagagacctccattagtgagatgggttcaaagtaccacttggagattttccaggaggcagaattgttggtgaatattaaagagcatgttctagttcctgagtatcggtttcttacaaatgaggaaaagaagacttgctggagaggtacactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

142

Amino Acids

16.9

Weight (kDa)

7.78

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22320
fragaria_vesca	FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica	MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica	Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis	pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis	RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata	RLG00000003175 RLG00000029644
rosa_multiflora	Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii	Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa	Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha	Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana	Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AfaI	GTAC	3 cut(s)	109, 308, 421
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	254, 303
AjnI	CCWGG	1 cut(s)	324
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
Alw26I	GTCTC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	183
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AspS9I	GGNCC	2 cut(s)	103, 183
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	410
BccI	CCATC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	326
BclI	TGATCA	2 cut(s)	37, 142
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 183
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	326
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	2 cut(s)	254, 363
BshFI	GGCC	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	185
Bso31I	GGTCTC	1 cut(s)	272
Bsp143I	GATC	4 cut(s)	16, 37, 43, 142
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	2 cut(s)	255, 364
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	272
BssMI	GATC	4 cut(s)	16, 37, 43, 142
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	3 cut(s)	66, 107, 426
Bst6I	CTCTTC	3 cut(s)	89, 119, 191
BstDEI	CTNAG	3 cut(s)	244, 263, 372
BstKTI	GATC	4 cut(s)	19, 40, 46, 145
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	4 cut(s)	16, 37, 43, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	422
CciI	TCATGA	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	103, 183
Csp6I	GTAC	3 cut(s)	108, 307, 420
CviAII	CATG	6 cut(s)	41, 52, 80, 91, 214, 359
CviJI	RGCY	1 cut(s)	185
CviKI_1	RGCY	1 cut(s)	185
CviQI	GTAC	3 cut(s)	108, 307, 420
DdeI	CTNAG	3 cut(s)	244, 263, 372
DpnI	GATC	4 cut(s)	18, 39, 45, 144
DpnII	GATC	4 cut(s)	16, 37, 43, 142
DraI	TTTAAA	1 cut(s)	70
Eam1104I	CTCTTC	3 cut(s)	89, 119, 191
EarI	CTCTTC	3 cut(s)	89, 119, 191
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	324
FaeI	CATG	6 cut(s)	44, 55, 83, 94, 217, 362
FaiI	YATR	7 cut(s)	42, 53, 81, 92, 153, 215, 360
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	6 cut(s)	40, 51, 79, 90, 213, 358
FbaI	TGATCA	2 cut(s)	37, 142
FspBI	CTAG	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	185
Hin1II	CATG	6 cut(s)	44, 55, 83, 94, 217, 362
HinfI	GANTC	3 cut(s)	217, 226, 265
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	142, 147, 264
Hpy188III	TCNNGA	4 cut(s)	20, 41, 221, 371
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	3 cut(s)	66, 107, 426
HpyCH4V	TGCA	3 cut(s)	4, 204, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	3 cut(s)	244, 263, 372
Hsp92II	CATG	6 cut(s)	44, 55, 83, 94, 217, 362
Ksp22I	TGATCA	2 cut(s)	37, 142
Kzo9I	GATC	4 cut(s)	16, 37, 43, 142
LpnPI	CCDG	6 cut(s)	177, 206, 311, 338, 384, 397
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	4 cut(s)	18, 39, 45, 144
MboI	GATC	4 cut(s)	16, 37, 43, 142
MboII	GAAGA	4 cut(s)	106, 136, 208, 415
MluCI	AATT	3 cut(s)	30, 231, 335
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	90, 94, 292, 322, 388, 410
MseI	TTAA	2 cut(s)	69, 351
MslI	CAYNNNNRTG	2 cut(s)	56, 212
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	210
NdeII	GATC	4 cut(s)	16, 37, 43, 142
NlaIII	CATG	6 cut(s)	44, 55, 83, 94, 217, 362
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	60
NspI	RCATGY	1 cut(s)	362
PagI	TCATGA	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	217, 226
PflFI	GACNNNGTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	324
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	103, 183
PsyI	GACNNNGTC	1 cut(s)	58
RsaI	GTAC	3 cut(s)	109, 308, 421
RsaNI	GTAC	3 cut(s)	108, 307, 420
RseI	CAYNNNNRTG	2 cut(s)	56, 212
SaqAI	TTAA	2 cut(s)	69, 351
Sau3AI	GATC	4 cut(s)	16, 37, 43, 142
Sau96I	GGNCC	2 cut(s)	103, 183
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	2 cut(s)	284, 421
SfaNI	GCATC	1 cut(s)	213
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	56, 212
Sse9I	AATT	3 cut(s)	30, 231, 335
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	3 cut(s)	66, 107, 426
TasI	AATT	3 cut(s)	30, 231, 335
TfiI	GAWTC	2 cut(s)	217, 226
Tru1I	TTAA	2 cut(s)	69, 351
Tru9I	TTAA	2 cut(s)	69, 351
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	3 cut(s)	107, 209, 230
TspRI	CASTG	1 cut(s)	429
Tth111I	GACNNNGTC	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	103
XceI	RCATGY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.