Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8382943.1

Orthogroup ID

OG0000701

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 733

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8382943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

gaggcagaattgttggtgaatattaaagagcatgttctagttcctgagcatcgggttcttacaaatgaggaaaagaagactttgctggagaggtacactgtgaaagaaacacagcttcctcgtattcagctgattgatccaattgcaagatattacgggcttaagcgtggacaagttgtgaagataatccggccaagtgagactgcaggacgatatgtcacctaccgttacgttatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

79

Amino Acids

9.35

Weight (kDa)

9.52

Isoelectric Point (pI)

18.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22320
fragaria_vesca	FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica	MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica	Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis	pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis	RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata	RLG00000003175 RLG00000029644
rosa_multiflora	Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii	Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa	Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha	Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana	Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	191
AfaI	GTAC	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	161
AhdI	GACNNNNNGTC	1 cut(s)	215
AluBI	AGCT	2 cut(s)	115, 130
AluI	AGCT	2 cut(s)	115, 130
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	28, 211
BbsI	GAAGAC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	161
BmeRI	GACNNNNNGTC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	161
BssMI	GATC	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	100, 227
BstAFI	CTTAAG	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	35
BstSFI	CTRYAG	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	4 cut(s)	115, 130, 160, 193
CviKI_1	RGCY	4 cut(s)	115, 130, 160, 193
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	191
Eam1105I	GACNNNNNGTC	1 cut(s)	215
FaeI	CATG	1 cut(s)	35
FaiI	YATR	2 cut(s)	33, 216
FatI	CATG	1 cut(s)	31
FspBI	CTAG	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	1 cut(s)	35
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	2 cut(s)	28, 211
Hpy166II	GTNNAC	2 cut(s)	96, 170
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	96, 170
HpyCH4III	ACNGT	2 cut(s)	100, 227
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	146, 206
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	4 cut(s)	57, 71, 192, 203
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	217, 227
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	88, 193
MfeI	CAATTG	1 cut(s)	141
MluCI	AATT	2 cut(s)	8, 141
MnlI	CCTC	3 cut(s)	61, 84, 129
MseI	TTAA	2 cut(s)	24, 162
MspA1I	CMGCKG	1 cut(s)	130
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	1 cut(s)	190
MunI	CAATTG	1 cut(s)	141
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	24, 162
Sau3AI	GATC	1 cut(s)	136
SetI	ASST	5 cut(s)	95, 117, 132, 224, 234
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	8, 141
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	100, 227
TaiI	ACGT	1 cut(s)	234
TasI	AATT	2 cut(s)	8, 141
Tru1I	TTAA	2 cut(s)	24, 162
Tru9I	TTAA	2 cut(s)	24, 162
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspRI	CASTG	1 cut(s)	103
Vha464I	CTTAAG	1 cut(s)	161
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.