Rmu_sc0001349.1_g000004

DNA-directed RNA polymerases I, II, and III subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001349.1
Physical Location & Seq
Forward (+)
27855 .. 31002
3148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001349.1_g000004.1.cds

Sequence Viewer

Length: 870 bp
atgtggcggagaaaaggtgaaagtggtgatgaacagagaactctccatcactggaaatctcatgagaggaaagagaaggagctgctagatggcaaagtgggcagatctggacgagcaaagaggttgggtgaaggtcgagatggaggtaaaggtgatgggggaaatggtggaggtggtggtgggtgggataggagtggagctgcattagacagcttcaaagccgtccccgccggcggcgaccgcgacgttgatgcagttgactccgcagccgcacggctcttctgttcctcatcggtctgggatccgagccttgggtccgggaaatttcgaagcggggatccccggtctcttcatgtccggccagctcgatcgtgggctagtgtttggctccaagaagttgtgctcggcttcgagaatctattcggaaggagaagaaggagaaagagaagctgcagccgcccaaatcatttttttttacaagtgagagacgtcggcggtgagctccgaagtgaggttttcagaaaagtccggtgggagacggccggtgaccgaattcccgcaaccagtgatcgaaatcctgcgaccggtaacctgaatcctgtgaaagttggccgaaatcctgcgaaagttgacaggattccgaccgtcgatgactggaatttggctcctgcggccggtgaccgggctccggcgaagtcgcttatgatttatgtatttttccatgacgaaccaaaagtttgggtgaagacaatcaagaattacatcaaacgcttggttcaggaggatacagacaaaggcatcgtggttattcaacaaaatccgactccttttgcaaaactcttcataagtgagatgagatcaaagtactag

Protein Analysis

289

Amino Acids

32.25

Weight (kDa)

10.19

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000701)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22320
fragaria_vesca FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata RLG00000003175 RLG00000029644
rosa_multiflora Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 492
AccII CGCG 1 cut(s) 243
AclWI GGATC 4 cut(s) 296, 309, 332, 345
AcoI YGGCCR 4 cut(s) 359, 540, 610, 672
AcsI RAATTY 3 cut(s) 323, 552, 658
AcyI GRCGYC 1 cut(s) 489
AfaI GTAC 1 cut(s) 866
AfiI CCNNNNNNNGG 7 cut(s) 233, 311, 511, 584, 674, 681, 688
AgeI ACCGGT 1 cut(s) 584
AgsI TTSAA 2 cut(s) 217, 812
AluBI AGCT 6 cut(s) 82, 200, 213, 365, 450, 502
AluI AGCT 6 cut(s) 82, 200, 213, 365, 450, 502
Alw21I GWGCWC 2 cut(s) 405, 504
Alw26I GTCTC 3 cut(s) 351, 480, 530
AlwI GGATC 4 cut(s) 296, 309, 332, 345
AoxI GGCC 4 cut(s) 359, 540, 610, 672
ApeKI GCWGC 5 cut(s) 82, 200, 266, 450, 453
ApoI RAATTY 3 cut(s) 323, 552, 658
AsiGI ACCGGT 1 cut(s) 584
Asp700I GAANNNNTTC 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 3 cut(s) 319, 343, 683
AsuHPI GGTGA 8 cut(s) 29, 38, 140, 164, 509, 557, 689, 754
AsuII TTCGAA 1 cut(s) 328
AvaII GGWCC 1 cut(s) 315
BamHI GGATCC 2 cut(s) 301, 337
BanII GRGCYC 2 cut(s) 504, 688
BbsI GAAGAC 1 cut(s) 752
Bbv12I GWGCWC 2 cut(s) 405, 504
BbvI GCAGC 5 cut(s) 69, 187, 278, 437, 465
BccI CCATC 4 cut(s) 54, 83, 134, 149
BceAI ACGGC 3 cut(s) 206, 290, 555
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciVI GTATCC 1 cut(s) 778
BcnI CCSGG 3 cut(s) 319, 343, 683
BcoDI GTCTC 3 cut(s) 351, 480, 530
BfaI CTAG 3 cut(s) 86, 378, 868
BfmI CTRYAG 1 cut(s) 451
BfuI GTATCC 1 cut(s) 778
BglII AGATCT 1 cut(s) 104
BisI GCNGC 9 cut(s) 83, 201, 235, 267, 270, 451, 454, 457, 672
BlsI GCNGC 9 cut(s) 84, 202, 236, 268, 271, 452, 455, 458, 673
BmcAI AGTACT 1 cut(s) 866
Bme1390I CCNGG 3 cut(s) 319, 343, 683
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 6 cut(s) 303, 316, 339, 389, 666, 687
BmrFI CCNGG 3 cut(s) 319, 343, 683
BmsI GCATC 2 cut(s) 241, 807
BpiI GAAGAC 1 cut(s) 752
Bpu14I TTCGAA 1 cut(s) 328
BpuMI CCSGG 3 cut(s) 319, 343, 683
BsaBI GATNNNNATC 1 cut(s) 573
BsaHI GRCGYC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 310, 341
BsaWI WCCGGW 2 cut(s) 528, 584
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 7 cut(s) 233, 311, 511, 584, 674, 681, 688
Bse118I RCCGGY 4 cut(s) 230, 542, 584, 674
Bse1I ACTGG 3 cut(s) 56, 564, 659
Bse8I GATNNNNATC 1 cut(s) 573
BseDI CCNNGG 2 cut(s) 310, 341
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 7 cut(s) 233, 311, 511, 584, 674, 681, 688
BseNI ACTGG 3 cut(s) 56, 564, 659
BseX3I CGGCCG 2 cut(s) 540, 672
BseXI GCAGC 5 cut(s) 69, 187, 278, 437, 465
Bsh1236I CGCG 1 cut(s) 243
Bsh1285I CGRYCG 6 cut(s) 241, 371, 543, 585, 645, 675
BshFI GGCC 4 cut(s) 361, 542, 612, 674
BshTI ACCGGT 1 cut(s) 584
BsiEI CGRYCG 6 cut(s) 241, 371, 543, 585, 645, 675
BsiHKAI GWGCWC 2 cut(s) 405, 504
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 7 cut(s) 233, 311, 511, 584, 674, 681, 688
BsmAI GTCTC 3 cut(s) 351, 480, 530
BsmBI CGTCTC 2 cut(s) 480, 530
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 4 cut(s) 361, 542, 612, 674
Bso31I GGTCTC 1 cut(s) 351
Bsp119I TTCGAA 1 cut(s) 328
Bsp1286I GDGCHC 3 cut(s) 405, 504, 688
Bsp143I GATC 6 cut(s) 104, 301, 337, 368, 568, 857
BspANI GGCC 4 cut(s) 361, 542, 612, 674
BspFNI CGCG 1 cut(s) 243
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 6 cut(s) 303, 316, 339, 389, 666, 687
BspMAI CTGCAG 1 cut(s) 455
BspPI GGATC 4 cut(s) 296, 309, 332, 345
BspQI GCTCTTC 1 cut(s) 284
BspT104I TTCGAA 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 351
BsrFI RCCGGY 4 cut(s) 230, 542, 584, 674
BsrI ACTGG 3 cut(s) 56, 564, 659
BssAI RCCGGY 4 cut(s) 230, 542, 584, 674
BssECI CCNNGG 2 cut(s) 310, 341
BssMI GATC 6 cut(s) 104, 301, 337, 368, 568, 857
BssNI GRCGYC 1 cut(s) 489
BssT1I CCWWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 646
Bst6I CTCTTC 3 cut(s) 284, 354, 845
BstACI GRCGYC 1 cut(s) 489
BstBI TTCGAA 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 232, 363
BstEII GGTNACC 3 cut(s) 545, 587, 677
BstFNI CGCG 1 cut(s) 243
BstKTI GATC 6 cut(s) 107, 304, 340, 371, 571, 860
BstMAI GTCTC 3 cut(s) 351, 480, 530
BstMBI GATC 6 cut(s) 104, 301, 337, 368, 568, 857
BstMCI CGRYCG 6 cut(s) 241, 371, 543, 585, 645, 675
BstMWI GCNNNNNNNGC 5 cut(s) 99, 227, 240, 456, 671
BstPI GGTNACC 3 cut(s) 545, 587, 677
BstSCI CCNGG 3 cut(s) 317, 341, 681
BstSFI CTRYAG 1 cut(s) 451
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 5 cut(s) 69, 187, 278, 437, 465
BstV2I GAAGAC 1 cut(s) 752
BstX2I RGATCY 3 cut(s) 104, 301, 337
BstXI CCANNNNNNTGG 1 cut(s) 738
BstYI RGATCY 3 cut(s) 104, 301, 337
BstZI CGGCCG 2 cut(s) 540, 672
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 4 cut(s) 361, 542, 612, 674
BtsIMutI CAGTG 2 cut(s) 49, 571
Cac8I GCNNGC 2 cut(s) 232, 363
CciI TCATGA 1 cut(s) 61
Cfr10I RCCGGY 4 cut(s) 230, 542, 584, 674
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 865
CspAI ACCGGT 1 cut(s) 584
CviAII CATG 3 cut(s) 62, 353, 722
CviQI GTAC 1 cut(s) 865
DpnI GATC 6 cut(s) 106, 303, 339, 370, 570, 859
DpnII GATC 6 cut(s) 104, 301, 337, 368, 568, 857
EaeI YGGCCR 4 cut(s) 359, 540, 610, 672
EagI CGGCCG 2 cut(s) 540, 672
Eam1104I CTCTTC 3 cut(s) 284, 354, 845
EarI CTCTTC 3 cut(s) 284, 354, 845
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 502
EclXI CGGCCG 2 cut(s) 540, 672
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 2 cut(s) 504, 688
Eco31I GGTCTC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 315
Eco52I CGGCCG 2 cut(s) 540, 672
Eco53kI GAGCTC 1 cut(s) 502
Eco91I GGTNACC 3 cut(s) 545, 587, 677
EcoICRI GAGCTC 1 cut(s) 502
EcoO65I GGTNACC 3 cut(s) 545, 587, 677
EcoRI GAATTC 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 2 cut(s) 504, 688
ErhI CCWWGG 1 cut(s) 310
Esp3I CGTCTC 2 cut(s) 480, 530
FaeI CATG 3 cut(s) 65, 356, 725
FaiI YATR 6 cut(s) 63, 354, 704, 711, 723, 845
FaqI GGGAC 1 cut(s) 209
FatI CATG 3 cut(s) 61, 352, 721
FauI CCCGC 3 cut(s) 235, 326, 565
Fnu4HI GCNGC 9 cut(s) 83, 201, 235, 267, 270, 451, 454, 457, 672
FriOI GRGCYC 2 cut(s) 504, 688
Fsp4HI GCNGC 9 cut(s) 83, 201, 235, 267, 270, 451, 454, 457, 672
FspBI CTAG 3 cut(s) 86, 378, 868
GluI GCNGC 9 cut(s) 83, 201, 235, 267, 270, 451, 454, 457, 672
HaeIII GGCC 4 cut(s) 361, 542, 612, 674
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 3 cut(s) 65, 356, 725
HincII GTYRAC 2 cut(s) 259, 631
HindII GTYRAC 2 cut(s) 259, 631
HinfI GANTC 5 cut(s) 260, 415, 595, 637, 823
HphI GGTGA 8 cut(s) 29, 38, 140, 164, 509, 557, 689, 754
Hpy166II GTNNAC 2 cut(s) 259, 631
Hpy188I TCNGA 6 cut(s) 306, 425, 506, 521, 642, 822
Hpy188III TCNNGA 6 cut(s) 62, 108, 137, 412, 754, 779
Hpy8I GTNNAC 2 cut(s) 259, 631
Hpy99I CGWCG 3 cut(s) 248, 494, 650
HpyAV CCTTC 4 cut(s) 70, 125, 420, 429
HpyCH4III ACNGT 1 cut(s) 646
HpyCH4IV ACGT 2 cut(s) 246, 489
HpyCH4V TGCA 4 cut(s) 203, 254, 453, 833
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 227, 240, 456, 671
HpySE526I ACGT 2 cut(s) 246, 489
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 3 cut(s) 65, 356, 725
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
Kzo9I GATC 6 cut(s) 104, 301, 337, 368, 568, 857
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 6 cut(s) 79, 197, 393, 507, 670, 691
Lsp1109I GCAGC 5 cut(s) 69, 187, 278, 437, 465
LweI GCATC 2 cut(s) 241, 807
MaeI CTAG 3 cut(s) 86, 378, 868
MaeII ACGT 2 cut(s) 246, 489
MaeIII GTNAC 3 cut(s) 545, 587, 677
MalI GATC 6 cut(s) 106, 303, 339, 370, 570, 859
MboI GATC 6 cut(s) 104, 301, 337, 368, 568, 857
MboII GAAGA 5 cut(s) 271, 341, 444, 757, 832
MflI RGATCY 3 cut(s) 104, 301, 337
MhlI GDGCHC 3 cut(s) 405, 504, 688
MluCI AATT 4 cut(s) 323, 552, 658, 757
MlyI GAGTC 2 cut(s) 254, 817
MmeI TCCRAC 2 cut(s) 665, 845
MnlI CCTC 7 cut(s) 60, 114, 137, 164, 298, 505, 775
MreI CGCCGGCG 1 cut(s) 230
MroNI GCCGGC 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 419
MspR9I CCNGG 3 cut(s) 319, 343, 683
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 5 cut(s) 99, 227, 240, 456, 671
NaeI GCCGGC 1 cut(s) 232
NciI CCSGG 3 cut(s) 319, 343, 683
NdeII GATC 6 cut(s) 104, 301, 337, 368, 568, 857
NgoMIV GCCGGC 1 cut(s) 230
NlaIII CATG 3 cut(s) 65, 356, 725
NlaIV GGNNCC 6 cut(s) 303, 316, 339, 389, 666, 687
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 545, 677
NspV TTCGAA 1 cut(s) 328
PagI TCATGA 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 284
PdiI GCCGGC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 3 cut(s) 415, 595, 637
PfoI TCCNGGA 1 cut(s) 317
PinAI ACCGGT 1 cut(s) 584
PkrI GCNGC 9 cut(s) 84, 202, 236, 268, 271, 452, 455, 458, 673
Ple19I CGATCG 1 cut(s) 371
PleI GAGTC 2 cut(s) 254, 817
PpsI GAGTC 2 cut(s) 254, 817
Psp124BI GAGCTC 1 cut(s) 504
PspEI GGTNACC 3 cut(s) 545, 587, 677
PspN4I GGNNCC 6 cut(s) 303, 316, 339, 389, 666, 687
PspPI GGNCC 1 cut(s) 315
PstI CTGCAG 1 cut(s) 455
PsuI RGATCY 3 cut(s) 104, 301, 337
PvuI CGATCG 1 cut(s) 371
RsaI GTAC 1 cut(s) 866
RsaNI GTAC 1 cut(s) 865
SacI GAGCTC 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 284
SatI GCNGC 9 cut(s) 83, 201, 235, 267, 270, 451, 454, 457, 672
Sau3AI GATC 6 cut(s) 104, 301, 337, 368, 568, 857
Sau96I GGNCC 1 cut(s) 315
ScaI AGTACT 1 cut(s) 866
SchI GAGTC 2 cut(s) 254, 817
ScrFI CCNGG 3 cut(s) 319, 343, 683
SduI GDGCHC 3 cut(s) 405, 504, 688
SfaNI GCATC 2 cut(s) 241, 807
SfcI CTRYAG 1 cut(s) 451
SfuI TTCGAA 1 cut(s) 328
SgrAI CRCCGGYG 1 cut(s) 230
SinI GGWCC 1 cut(s) 315
Sse9I AATT 4 cut(s) 323, 552, 658, 757
SspMI CTAG 3 cut(s) 86, 378, 868
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 3 cut(s) 317, 341, 681
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 646
TaiI ACGT 2 cut(s) 249, 492
TaqI TCGA 6 cut(s) 136, 328, 367, 411, 571, 648
TaqII GACCGA 2 cut(s) 283, 564
TasI AATT 4 cut(s) 323, 552, 658, 757
TatI WGTACW 1 cut(s) 864
TauI GCSGC 4 cut(s) 237, 272, 459, 674
TfiI GAWTC 3 cut(s) 415, 595, 637
TscAI CASTG 2 cut(s) 56, 571
TseFI GTSAC 2 cut(s) 545, 677
TseI GCWGC 5 cut(s) 82, 200, 266, 450, 453
Tsp45I GTSAC 2 cut(s) 545, 677
TspDTI ATGAA 3 cut(s) 45, 341, 832
TspRI CASTG 2 cut(s) 56, 571
VpaK11BI GGWCC 1 cut(s) 315
XapI RAATTY 3 cut(s) 323, 552, 658
XcmI CCANNNNNNNNNTGG 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 3 cut(s) 86, 378, 868
ZraI GACGTC 1 cut(s) 490
ZrmI AGTACT 1 cut(s) 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.