DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 487 |
| AclWI | GGATC | 3 cut(s) | 65, 99, 428 |
| AcsI | RAATTY | 1 cut(s) | 230 |
| AfaI | GTAC | 2 cut(s) | 314, 392 |
| AflII | CTTAAG | 1 cut(s) | 458 |
| AgsI | TTSAA | 1 cut(s) | 309 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 512 |
| AjiI | CACGTC | 1 cut(s) | 185 |
| AjnI | CCWGG | 1 cut(s) | 330 |
| AluBI | AGCT | 3 cut(s) | 227, 412, 427 |
| AluI | AGCT | 3 cut(s) | 227, 412, 427 |
| Alw26I | GTCTC | 2 cut(s) | 175, 491 |
| AlwI | GGATC | 3 cut(s) | 65, 99, 428 |
| Ama87I | CYCGRG | 1 cut(s) | 490 |
| ApoI | RAATTY | 1 cut(s) | 230 |
| AspS9I | GGNCC | 1 cut(s) | 157 |
| AsuHPI | GGTGA | 3 cut(s) | 308, 346, 508 |
| AsuII | TTCGAA | 1 cut(s) | 43 |
| AvaI | CYCGRG | 1 cut(s) | 490 |
| AvaII | GGWCC | 1 cut(s) | 157 |
| BccI | CCATC | 2 cut(s) | 173, 295 |
| BciT130I | CCWGG | 1 cut(s) | 332 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BcoDI | GTCTC | 2 cut(s) | 175, 491 |
| BfmI | CTRYAG | 2 cut(s) | 34, 501 |
| BfrI | CTTAAG | 1 cut(s) | 458 |
| Bme1390I | CCNGG | 1 cut(s) | 332 |
| Bme18I | GGWCC | 1 cut(s) | 157 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 512 |
| BmeT110I | CYCGRG | 1 cut(s) | 490 |
| BmgBI | CACGTC | 1 cut(s) | 185 |
| BmgT120I | GGNCC | 1 cut(s) | 157 |
| BmrFI | CCNGG | 1 cut(s) | 332 |
| BmsI | GCATC | 1 cut(s) | 45 |
| BpmI | CTGGAG | 1 cut(s) | 404 |
| Bpu14I | TTCGAA | 1 cut(s) | 43 |
| BsaBI | GATNNNNATC | 1 cut(s) | 96 |
| Bse118I | RCCGGY | 1 cut(s) | 453 |
| Bse8I | GATNNNNATC | 1 cut(s) | 96 |
| BseBI | CCWGG | 1 cut(s) | 332 |
| BseJI | GATNNNNATC | 1 cut(s) | 96 |
| BsiHKCI | CYCGRG | 1 cut(s) | 490 |
| BsiSI | CCGG | 1 cut(s) | 454 |
| BsmAI | GTCTC | 2 cut(s) | 175, 491 |
| BsmBI | CGTCTC | 1 cut(s) | 175 |
| BsoBI | CYCGRG | 1 cut(s) | 490 |
| Bsp119I | TTCGAA | 1 cut(s) | 43 |
| Bsp143I | GATC | 5 cut(s) | 70, 91, 97, 196, 433 |
| BspACI | CCGC | 1 cut(s) | 487 |
| BspHI | TCATGA | 1 cut(s) | 94 |
| BspMAI | CTGCAG | 1 cut(s) | 505 |
| BspPI | GGATC | 3 cut(s) | 65, 99, 428 |
| BspT104I | TTCGAA | 1 cut(s) | 43 |
| BspTI | CTTAAG | 1 cut(s) | 458 |
| BsrFI | RCCGGY | 1 cut(s) | 453 |
| BssAI | RCCGGY | 1 cut(s) | 453 |
| BssMI | GATC | 5 cut(s) | 70, 91, 97, 196, 433 |
| Bst2UI | CCWGG | 1 cut(s) | 332 |
| Bst4CI | ACNGT | 3 cut(s) | 52, 397, 524 |
| Bst6I | CTCTTC | 1 cut(s) | 173 |
| BstAFI | CTTAAG | 1 cut(s) | 458 |
| BstBI | TTCGAA | 1 cut(s) | 43 |
| BstKTI | GATC | 5 cut(s) | 73, 94, 100, 199, 436 |
| BstMAI | GTCTC | 2 cut(s) | 175, 491 |
| BstMBI | GATC | 5 cut(s) | 70, 91, 97, 196, 433 |
| BstNI | CCWGG | 1 cut(s) | 332 |
| BstSCI | CCNGG | 1 cut(s) | 330 |
| BstSFI | CTRYAG | 2 cut(s) | 34, 501 |
| BstX2I | RGATCY | 1 cut(s) | 70 |
| BstYI | RGATCY | 1 cut(s) | 70 |
| BtrI | CACGTC | 1 cut(s) | 185 |
| BtsIMutI | CAGTG | 2 cut(s) | 57, 393 |
| CciI | TCATGA | 1 cut(s) | 94 |
| Cfr10I | RCCGGY | 1 cut(s) | 453 |
| Cfr13I | GGNCC | 1 cut(s) | 157 |
| Csp6I | GTAC | 2 cut(s) | 313, 391 |
| CviAII | CATG | 4 cut(s) | 95, 106, 134, 145 |
| CviJI | RGCY | 5 cut(s) | 31, 227, 412, 427, 457 |
| CviKI_1 | RGCY | 5 cut(s) | 31, 227, 412, 427, 457 |
| CviQI | GTAC | 2 cut(s) | 313, 391 |
| DpnI | GATC | 5 cut(s) | 72, 93, 99, 198, 435 |
| DpnII | GATC | 5 cut(s) | 70, 91, 97, 196, 433 |
| DraI | TTTAAA | 1 cut(s) | 124 |
| DriI | GACNNNNNGTC | 1 cut(s) | 512 |
| Eam1104I | CTCTTC | 1 cut(s) | 173 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 512 |
| EarI | CTCTTC | 1 cut(s) | 173 |
| EciI | GGCGGA | 1 cut(s) | 476 |
| Eco47I | GGWCC | 1 cut(s) | 157 |
| Eco88I | CYCGRG | 1 cut(s) | 490 |
| EcoO109I | RGGNCCY | 1 cut(s) | 157 |
| EcoRII | CCWGG | 1 cut(s) | 330 |
| Esp3I | CGTCTC | 1 cut(s) | 175 |
| FaeI | CATG | 4 cut(s) | 98, 109, 137, 148 |
| FaiI | YATR | 8 cut(s) | 36, 96, 107, 135, 146, 207, 448, 513 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 302, 334 |
| FatI | CATG | 4 cut(s) | 94, 105, 133, 144 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| GsuI | CTGGAG | 1 cut(s) | 404 |
| HapII | CCGG | 1 cut(s) | 454 |
| Hin1II | CATG | 4 cut(s) | 98, 109, 137, 148 |
| HinfI | GANTC | 2 cut(s) | 191, 271 |
| HpaII | CCGG | 1 cut(s) | 454 |
| HphI | GGTGA | 3 cut(s) | 308, 346, 508 |
| Hpy166II | GTNNAC | 2 cut(s) | 393, 467 |
| Hpy188I | TCNGA | 3 cut(s) | 196, 201, 270 |
| Hpy188III | TCNNGA | 3 cut(s) | 74, 95, 241 |
| Hpy8I | GTNNAC | 2 cut(s) | 393, 467 |
| HpyAV | CCTTC | 1 cut(s) | 168 |
| HpyCH4III | ACNGT | 3 cut(s) | 52, 397, 524 |
| HpyCH4IV | ACGT | 2 cut(s) | 184, 528 |
| HpyCH4V | TGCA | 4 cut(s) | 58, 281, 443, 503 |
| HpySE526I | ACGT | 2 cut(s) | 184, 528 |
| Hsp92II | CATG | 4 cut(s) | 98, 109, 137, 148 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| Kzo9I | GATC | 5 cut(s) | 70, 91, 97, 196, 433 |
| LpnPI | CCDG | 7 cut(s) | 87, 231, 317, 344, 368, 467, 489 |
| LweI | GCATC | 1 cut(s) | 45 |
| MaeII | ACGT | 2 cut(s) | 184, 528 |
| MaeIII | GTNAC | 3 cut(s) | 185, 514, 524 |
| MalI | GATC | 5 cut(s) | 72, 93, 99, 198, 435 |
| MboI | GATC | 5 cut(s) | 70, 91, 97, 196, 433 |
| MboII | GAAGA | 5 cut(s) | 26, 29, 190, 262, 490 |
| MfeI | CAATTG | 1 cut(s) | 438 |
| MflI | RGATCY | 1 cut(s) | 70 |
| MluCI | AATT | 4 cut(s) | 84, 230, 343, 438 |
| MlyI | GAGTC | 2 cut(s) | 200, 265 |
| MnlI | CCTC | 6 cut(s) | 21, 148, 298, 358, 381, 426 |
| MseI | TTAA | 3 cut(s) | 123, 342, 459 |
| MslI | CAYNNNNRTG | 1 cut(s) | 110 |
| MspA1I | CMGCKG | 1 cut(s) | 427 |
| MspCI | CTTAAG | 1 cut(s) | 458 |
| MspI | CCGG | 1 cut(s) | 454 |
| MspR9I | CCNGG | 1 cut(s) | 332 |
| MunI | CAATTG | 1 cut(s) | 438 |
| MvaI | CCWGG | 1 cut(s) | 332 |
| NdeII | GATC | 5 cut(s) | 70, 91, 97, 196, 433 |
| NlaIII | CATG | 4 cut(s) | 98, 109, 137, 148 |
| NmuCI | GTSAC | 2 cut(s) | 185, 514 |
| NspV | TTCGAA | 1 cut(s) | 43 |
| PagI | TCATGA | 1 cut(s) | 94 |
| PflFI | GACNNNGTC | 1 cut(s) | 112 |
| PleI | GAGTC | 2 cut(s) | 199, 265 |
| PpsI | GAGTC | 2 cut(s) | 199, 265 |
| PpuMI | RGGWCCY | 1 cut(s) | 157 |
| Psp5II | RGGWCCY | 1 cut(s) | 157 |
| Psp6I | CCWGG | 1 cut(s) | 330 |
| PspGI | CCWGG | 1 cut(s) | 330 |
| PspPI | GGNCC | 1 cut(s) | 157 |
| PspPPI | RGGWCCY | 1 cut(s) | 157 |
| PstI | CTGCAG | 1 cut(s) | 505 |
| PsuI | RGATCY | 1 cut(s) | 70 |
| PsyI | GACNNNGTC | 1 cut(s) | 112 |
| PvuII | CAGCTG | 1 cut(s) | 427 |
| RsaI | GTAC | 2 cut(s) | 314, 392 |
| RsaNI | GTAC | 2 cut(s) | 313, 391 |
| RseI | CAYNNNNRTG | 1 cut(s) | 110 |
| SaqAI | TTAA | 3 cut(s) | 123, 342, 459 |
| Sau3AI | GATC | 5 cut(s) | 70, 91, 97, 196, 433 |
| Sau96I | GGNCC | 1 cut(s) | 157 |
| SchI | GAGTC | 2 cut(s) | 200, 265 |
| ScrFI | CCNGG | 1 cut(s) | 332 |
| SfaNI | GCATC | 1 cut(s) | 45 |
| SfcI | CTRYAG | 2 cut(s) | 34, 501 |
| SfuI | TTCGAA | 1 cut(s) | 43 |
| SinI | GGWCC | 1 cut(s) | 157 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 110 |
| SmlI | CTYRAG | 1 cut(s) | 458 |
| SmoI | CTYRAG | 1 cut(s) | 458 |
| Sse9I | AATT | 4 cut(s) | 84, 230, 343, 438 |
| SsiI | CCGC | 1 cut(s) | 487 |
| StyD4I | CCNGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 3 cut(s) | 52, 397, 524 |
| TaiI | ACGT | 2 cut(s) | 187, 531 |
| TaqI | TCGA | 1 cut(s) | 43 |
| TasI | AATT | 4 cut(s) | 84, 230, 343, 438 |
| Tru1I | TTAA | 3 cut(s) | 123, 342, 459 |
| Tru9I | TTAA | 3 cut(s) | 123, 342, 459 |
| TscAI | CASTG | 2 cut(s) | 57, 400 |
| TseFI | GTSAC | 2 cut(s) | 185, 514 |
| Tsp45I | GTSAC | 2 cut(s) | 185, 514 |
| TspDTI | ATGAA | 3 cut(s) | 161, 263, 336 |
| TspRI | CASTG | 2 cut(s) | 57, 400 |
| Tth111I | GACNNNGTC | 1 cut(s) | 112 |
| Vha464I | CTTAAG | 1 cut(s) | 458 |
| VpaK11BI | GGWCC | 1 cut(s) | 157 |
| XapI | RAATTY | 1 cut(s) | 230 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 298 |