Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000532.1

Orthogroup ID

OG0000701

Physical Location & Seq

Genomic Coordinates Forward (+)

171449 .. 174880

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000532.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atggctctatcggaagatgaaatcacgaggctttacagaattcgaagaacggtgttggaaatgctgaaagatcgggattacttagttacagaagcagagatcaacatgacaaaagaacaattcaagagcacatatggagagaacatgaaaagggaagatcttgacatcaataaagaaaagcggagtaacagctctgatcagatatatgtcttcttccctaatgaggcaaaggttggggtaaatacaatgagggactacaccaagcgcatgcaatcgcagaatgtgttcaaagcaatcttggtgtctcaaacaaagctgactccttttgcaaatagatgtataagtgagatgtctacaaggttccgcatggaggttttccaggaggaagaactgttggtgaatattagagagcatgttctagttcctgcgcatcaggtgcttacaaatgaggaaaagaagagtttgctgcagaggtataccgtgaaagaaacacagcttcctcggatgcaggtggttgatccagttgcaaggtattacgggctttcacgtggacaagttgtgaagataatcaggccaagggcagcgcctgaaagccctgcttgccttctacccccacgagcctgcaagccctgcttaccttctaccctcgcaagcactcgcctgccctcgcgactgcgactcactagcaacaccgcgaccctgcgaccccagtgtcaccgcaactcgcccgccaccccgcgacccagcgacctcgcggcattcctgcagcatcctcgcggcatccctgcagcatcctcgcagcctcgcaacatccccgagcatcctcgctgcctcgcgacatccccacagcatcctcgcaacctcgcgacatcccagcagcagtcgcatccctgcagtggccccataacagtcctcgctgcatctccgcagtgtcctcgtagcgaccctgcaatatcactgcacagcccagccaacaaatttttccggtcaagaattccggcatcttttcaaggggagaccaaaagcctgaactatggggattcatgctcactccaaccttggagcttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

356

Amino Acids

40.4

Weight (kDa)

9.68

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22320
fragaria_vesca	FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica	MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica	Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis	pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis	RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata	RLG00000003175 RLG00000029644
rosa_multiflora	Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii	Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa	Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha	Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana	Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
AasI	GACNNNNNNGTC	1 cut(s)	711
Acc16I	TGCGCA	1 cut(s)	429
Acc36I	ACCTGC	1 cut(s)	499
AccI	GTMKAC	2 cut(s)	353, 476
AccII	CGCG	7 cut(s)	670, 695, 739, 755, 777, 836, 866
AciI	CCGC	9 cut(s)	181, 364, 693, 718, 729, 737, 755, 777, 926
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	3 cut(s)	39, 977, 993
AcvI	CACGTG	1 cut(s)	548
AfiI	CCNNNNNNNGG	3 cut(s)	223, 370, 896
AgsI	TTSAA	3 cut(s)	124, 289, 1010
AjnI	CCWGG	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	2 cut(s)	965, 997
AluBI	AGCT	4 cut(s)	192, 316, 496, 1065
AluI	AGCT	4 cut(s)	192, 316, 496, 1065
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	2 cut(s)	309, 1010
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	815
AoxI	GGCC	2 cut(s)	572, 898
ApeKI	GCWGC	8 cut(s)	466, 581, 766, 788, 799, 828, 877, 917
ApoI	RAATTY	3 cut(s)	39, 977, 993
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	3 cut(s)	267, 430, 586
AspS9I	GGNCC	1 cut(s)	899
AsuHPI	GGTGA	2 cut(s)	409, 707
AsuII	TTCGAA	1 cut(s)	43
AvaI	CYCGRG	1 cut(s)	815
BauI	CACGAG	2 cut(s)	25, 615
BbrPI	CACGTG	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	8 cut(s)	453, 593, 778, 800, 811, 815, 889, 904
BcgI	CGANNNNNNTGC	6 cut(s)	755, 777, 789, 811, 917, 951
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	309, 1010
BfaI	CTAG	2 cut(s)	419, 684
BfmI	CTRYAG	4 cut(s)	467, 764, 786, 892
BfoI	RGCGCY	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	499
BglII	AGATCT	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	380
BmeT110I	CYCGRG	1 cut(s)	815
BmgT120I	GGNCC	1 cut(s)	899
BmiI	GGNNCC	2 cut(s)	362, 901
BmrFI	CCNGG	1 cut(s)	380
BmrI	ACTGGG	1 cut(s)	703
BmuI	ACTGGG	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	202
Bpu14I	TTCGAA	1 cut(s)	43
BsaAI	YACGTR	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	3 cut(s)	500, 575, 1058
BsaWI	WCCGGW	1 cut(s)	984
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 370, 896
Bse1I	ACTGG	2 cut(s)	521, 709
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	500, 575, 1058
BseLI	CCNNNNNNNGG	3 cut(s)	223, 370, 896
BseNI	ACTGG	2 cut(s)	521, 709
BseXI	GCAGC	8 cut(s)	453, 593, 778, 800, 811, 815, 889, 904
BseYI	CCCAGC	3 cut(s)	743, 873, 967
BsgI	GTGCAG	1 cut(s)	944
Bsh1236I	CGCG	7 cut(s)	670, 695, 739, 755, 777, 836, 866
BshFI	GGCC	2 cut(s)	574, 900
BsiHKAI	GWGCWC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	815
BsiSI	CCGG	2 cut(s)	985, 998
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	3 cut(s)	223, 370, 896
BsmAI	GTCTC	2 cut(s)	309, 1010
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	2 cut(s)	574, 900
Bso31I	GGTCTC	1 cut(s)	1010
BsoBI	CYCGRG	1 cut(s)	815
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	5 cut(s)	70, 99, 157, 196, 517
Bsp68I	TCGCGA	3 cut(s)	670, 836, 866
BspACI	CCGC	9 cut(s)	181, 364, 693, 718, 729, 737, 755, 777, 926
BspANI	GGCC	2 cut(s)	574, 900
BspFNI	CGCG	7 cut(s)	670, 695, 739, 755, 777, 836, 866
BspLI	GGNNCC	2 cut(s)	362, 901
BspMAI	CTGCAG	4 cut(s)	471, 768, 790, 896
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	1 cut(s)	512
BspT104I	TTCGAA	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	1010
BsrI	ACTGG	2 cut(s)	521, 709
BssECI	CCNNGG	3 cut(s)	500, 575, 1058
BssMI	GATC	5 cut(s)	70, 99, 157, 196, 517
BssNAI	GTATAC	1 cut(s)	477
BssSI	CACGAG	2 cut(s)	25, 615
BssT1I	CCWWGG	2 cut(s)	575, 1058
Bst1107I	GTATAC	1 cut(s)	477
Bst2BI	CACGAG	2 cut(s)	25, 615
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	4 cut(s)	52, 393, 481, 910
Bst6I	CTCTTC	1 cut(s)	452
BstAPI	GCANNNNNTGC	2 cut(s)	436, 630
BstBAI	YACGTR	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	7 cut(s)	269, 601, 622, 626, 652, 662, 729
BstDEI	CTNAG	1 cut(s)	82
BstFNI	CGCG	7 cut(s)	670, 695, 739, 755, 777, 836, 866
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	3 cut(s)	267, 430, 586
BstKTI	GATC	5 cut(s)	73, 102, 160, 199, 520
BstMAI	GTCTC	2 cut(s)	309, 1010
BstMBI	GATC	5 cut(s)	70, 99, 157, 196, 517
BstMWI	GCNNNNNNNGC	4 cut(s)	436, 600, 630, 883
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	2 cut(s)	271, 416
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	4 cut(s)	467, 764, 786, 892
BstUI	CGCG	7 cut(s)	670, 695, 739, 755, 777, 836, 866
BstV1I	GCAGC	8 cut(s)	453, 593, 778, 800, 811, 815, 889, 904
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BstZ17I	GTATAC	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	574, 900
BtsI	GCAGTG	3 cut(s)	901, 935, 956
BtsIMutI	CAGTG	4 cut(s)	716, 901, 935, 956
BtuMI	TCGCGA	3 cut(s)	670, 836, 866
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	7 cut(s)	269, 601, 622, 626, 652, 662, 729
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	3 cut(s)	267, 430, 586
Cfr13I	GGNCC	1 cut(s)	899
CviAII	CATG	6 cut(s)	106, 145, 268, 367, 413, 1044
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	5 cut(s)	72, 101, 159, 198, 519
DpnII	GATC	5 cut(s)	70, 99, 157, 196, 517
DrdI	GACNNNNNNGTC	1 cut(s)	711
DseDI	GACNNNNNNGTC	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco130I	CCWWGG	2 cut(s)	575, 1058
Eco31I	GGTCTC	1 cut(s)	1010
Eco72I	CACGTG	1 cut(s)	548
Eco88I	CYCGRG	1 cut(s)	815
EcoRI	GAATTC	2 cut(s)	39, 993
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	575, 1058
ErhI	CCWWGG	2 cut(s)	575, 1058
FaeI	CATG	6 cut(s)	109, 148, 271, 370, 416, 1047
FalI	AAGNNNNNCTT	4 cut(s)	583, 615, 617, 649
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	6 cut(s)	105, 144, 267, 366, 412, 1043
FauI	CCCGC	2 cut(s)	736, 744
FauNDI	CATATG	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	2 cut(s)	353, 476
FspBI	CTAG	2 cut(s)	419, 684
FspI	TGCGCA	1 cut(s)	429
GlaI	GCGC	3 cut(s)	266, 429, 585
GsaI	CCCAGC	3 cut(s)	747, 877, 971
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	2 cut(s)	574, 900
HapII	CCGG	2 cut(s)	985, 998
HhaI	GCGC	3 cut(s)	267, 430, 586
Hin1II	CATG	6 cut(s)	109, 148, 271, 370, 416, 1047
Hin6I	GCGC	3 cut(s)	265, 428, 584
HinP1I	GCGC	3 cut(s)	265, 428, 584
HinfI	GANTC	3 cut(s)	319, 678, 1040
HpaII	CCGG	2 cut(s)	985, 998
HphI	GGTGA	2 cut(s)	409, 707
Hpy166II	GTNNAC	3 cut(s)	354, 477, 551
Hpy188I	TCNGA	4 cut(s)	13, 196, 201, 504
Hpy188III	TCNNGA	8 cut(s)	25, 74, 124, 161, 669, 835, 865, 990
Hpy8I	GTNNAC	3 cut(s)	354, 477, 551
HpyAV	CCTTC	2 cut(s)	614, 648
HpyCH4III	ACNGT	4 cut(s)	52, 393, 481, 910
HpyCH4IV	ACGT	1 cut(s)	547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	436, 600, 630, 883
HpyF3I	CTNAG	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	6 cut(s)	109, 148, 271, 370, 416, 1047
HspAI	GCGC	3 cut(s)	265, 428, 584
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	5 cut(s)	70, 99, 157, 196, 517
LmnI	GCTCC	1 cut(s)	1062
Lsp1109I	GCAGC	8 cut(s)	453, 593, 778, 800, 811, 815, 889, 904
MaeI	CTAG	2 cut(s)	419, 684
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	3 cut(s)	85, 185, 713
MalI	GATC	5 cut(s)	72, 101, 159, 198, 519
MboI	GATC	5 cut(s)	70, 99, 157, 196, 517
MboII	GAAGA	8 cut(s)	26, 57, 167, 202, 205, 398, 469, 574
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	4 cut(s)	39, 119, 977, 993
MlyI	GAGTC	2 cut(s)	313, 672
MmeI	TCCRAC	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	284
MspI	CCGG	2 cut(s)	985, 998
MspR9I	CCNGG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	758
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	7 cut(s)	670, 695, 739, 755, 777, 836, 866
MwoI	GCNNNNNNNGC	4 cut(s)	436, 600, 630, 883
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	5 cut(s)	70, 99, 157, 196, 517
NlaIII	CATG	6 cut(s)	109, 148, 271, 370, 416, 1047
NlaIV	GGNNCC	2 cut(s)	362, 901
NmuCI	GTSAC	1 cut(s)	713
NruI	TCGCGA	3 cut(s)	670, 836, 866
NsbI	TGCGCA	1 cut(s)	429
NspI	RCATGY	2 cut(s)	271, 416
NspV	TTCGAA	1 cut(s)	43
PaeI	GCATGC	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	499
PctI	GAATGC	1 cut(s)	758
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	1040
PfoI	TCCNGGA	1 cut(s)	378
PleI	GAGTC	2 cut(s)	313, 672
PmaCI	CACGTG	1 cut(s)	548
PmlI	CACGTG	1 cut(s)	548
PpsI	GAGTC	2 cut(s)	313, 672
Ppu21I	YACGTR	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	378
PspCI	CACGTG	1 cut(s)	548
PspFI	CCCAGC	3 cut(s)	743, 873, 967
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	362, 901
PspPI	GGNCC	1 cut(s)	899
PstI	CTGCAG	4 cut(s)	471, 768, 790, 896
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	157
RruI	TCGCGA	3 cut(s)	670, 836, 866
Sau3AI	GATC	5 cut(s)	70, 99, 157, 196, 517
Sau96I	GGNCC	1 cut(s)	899
SchI	GAGTC	2 cut(s)	313, 672
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	131
SfcI	CTRYAG	4 cut(s)	467, 764, 786, 892
SfuI	TTCGAA	1 cut(s)	43
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	4 cut(s)	39, 119, 977, 993
SsiI	CCGC	9 cut(s)	181, 364, 693, 718, 729, 737, 755, 777, 926
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	2 cut(s)	419, 684
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	575, 1058
TaaI	ACNGT	4 cut(s)	52, 393, 481, 910
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	1 cut(s)	43
TasI	AATT	4 cut(s)	39, 119, 977, 993
TauI	GCSGC	2 cut(s)	758, 780
TfiI	GAWTC	1 cut(s)	1040
TscAI	CASTG	4 cut(s)	716, 901, 935, 963
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	8 cut(s)	466, 581, 766, 788, 799, 828, 877, 917
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	3 cut(s)	33, 161, 1032
TspRI	CASTG	4 cut(s)	716, 901, 935, 963
XapI	RAATTY	3 cut(s)	39, 977, 993
XceI	RCATGY	2 cut(s)	271, 416
XmiI	GTMKAC	2 cut(s)	353, 476
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	419, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.