DNA-directed RNA polymerases I, II, and III subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| GIDA | PF01134 | 79 - 470 | 6.7e-157 | Glucose inhibited division protein A |
| FAD_oxidored | PF12831 | 79 - 107 | 1.5e-06 | FAD dependent oxidoreductase |
| GIDA_C_1st | PF21680 | 532 - 626 | 3.9e-19 | tRNA modifying enzyme MnmG/GidA C-terminal helical domain |
| SAM_GIDA_C | PF13932 | 631 - 686 | 5.8e-24 | tRNA modifying enzyme MnmG/GidA C-terminal helical bundle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 872, 1894 |
| AccBSI | CCGCTC | 1 cut(s) | 1512 |
| AccII | CGCG | 2 cut(s) | 36, 1971 |
| AciI | CCGC | 9 cut(s) | 34, 124, 127, 174, 369, 835, 838, 1495, 1510 |
| AclWI | GGATC | 1 cut(s) | 1530 |
| AcsI | RAATTY | 4 cut(s) | 702, 1098, 1632, 1668 |
| AcuI | CTGAAG | 1 cut(s) | 124 |
| AcvI | CACGTG | 1 cut(s) | 827 |
| AfaI | GTAC | 2 cut(s) | 630, 955 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 130, 297, 298, 365, 516, 872, 1010, 1078, 1894 |
| AflII | CTTAAG | 1 cut(s) | 1751 |
| AflIII | ACRYGT | 3 cut(s) | 826, 1762, 2143 |
| AjnI | CCWGG | 2 cut(s) | 1201, 1362 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 104, 136 |
| AluBI | AGCT | 9 cut(s) | 115, 144, 275, 740, 752, 1135, 1440, 1628, 2178 |
| AluI | AGCT | 9 cut(s) | 115, 144, 275, 740, 752, 1135, 1440, 1628, 2178 |
| Alw21I | GWGCWC | 4 cut(s) | 100, 505, 559, 968 |
| Alw26I | GTCTC | 4 cut(s) | 775, 1165, 1984, 2162 |
| Alw44I | GTGCAC | 1 cut(s) | 501 |
| AlwI | GGATC | 1 cut(s) | 1530 |
| AoxI | GGCC | 4 cut(s) | 478, 1034, 1229, 1570 |
| ApaI | GGGCCC | 1 cut(s) | 482 |
| ApaLI | GTGCAC | 1 cut(s) | 501 |
| ApeKI | GCWGC | 9 cut(s) | 115, 144, 275, 346, 939, 1355, 1358, 1388, 1437 |
| ApoI | RAATTY | 4 cut(s) | 702, 1098, 1632, 1668 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1990, 2022 |
| AseI | ATTAAT | 2 cut(s) | 1383, 1454 |
| AspA2I | CCTAGG | 1 cut(s) | 1037 |
| AspLEI | GCGC | 1 cut(s) | 1872 |
| AspS9I | GGNCC | 7 cut(s) | 371, 478, 479, 1034, 1477, 1570, 1897 |
| AsuC2I | CCSGG | 1 cut(s) | 157 |
| AsuHPI | GGTGA | 5 cut(s) | 157, 887, 962, 1999, 2041 |
| AsuII | TTCGAA | 2 cut(s) | 792, 1666 |
| AvaII | GGWCC | 3 cut(s) | 371, 1477, 1897 |
| AvrII | CCTAGG | 1 cut(s) | 1037 |
| BaeGI | GKGCMC | 2 cut(s) | 482, 505 |
| BanII | GRGCYC | 1 cut(s) | 482 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1844, 1876 |
| BbrPI | CACGTG | 1 cut(s) | 827 |
| BbsI | GAAGAC | 2 cut(s) | 1739, 2132 |
| Bbv12I | GWGCWC | 4 cut(s) | 100, 505, 559, 968 |
| BbvCI | CCTCAGC | 1 cut(s) | 1226 |
| BbvI | GCAGC | 9 cut(s) | 102, 131, 262, 358, 926, 1342, 1370, 1375, 1449 |
| BccI | CCATC | 4 cut(s) | 1011, 1397, 1888, 1908 |
| BceAI | ACGGC | 1 cut(s) | 1557 |
| BciT130I | CCWGG | 2 cut(s) | 1203, 1364 |
| BcnI | CCSGG | 1 cut(s) | 157 |
| BcoDI | GTCTC | 4 cut(s) | 775, 1165, 1984, 2162 |
| BfaI | CTAG | 5 cut(s) | 218, 281, 1038, 1701, 1815 |
| BfmI | CTRYAG | 3 cut(s) | 729, 1242, 1356 |
| BfrI | CTTAAG | 1 cut(s) | 1751 |
| BglII | AGATCT | 1 cut(s) | 1681 |
| BlnI | CCTAGG | 1 cut(s) | 1037 |
| Bme1390I | CCNGG | 3 cut(s) | 157, 1203, 1364 |
| Bme18I | GGWCC | 3 cut(s) | 371, 1477, 1897 |
| BmgT120I | GGNCC | 7 cut(s) | 371, 478, 479, 1034, 1477, 1570, 1897 |
| BmiI | GGNNCC | 5 cut(s) | 479, 480, 864, 1035, 2105 |
| BmrFI | CCNGG | 3 cut(s) | 157, 1203, 1364 |
| BmrI | ACTGGG | 1 cut(s) | 213 |
| BmsI | GCATC | 3 cut(s) | 293, 394, 1102 |
| BmuI | ACTGGG | 1 cut(s) | 213 |
| BpiI | GAAGAC | 2 cut(s) | 1739, 2132 |
| BpmI | CTGGAG | 3 cut(s) | 171, 804, 1760 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1131, 1226 |
| Bpu14I | TTCGAA | 2 cut(s) | 792, 1666 |
| BpuEI | CTTGAG | 3 cut(s) | 214, 457, 1210 |
| BpuMI | CCSGG | 1 cut(s) | 157 |
| BsaAI | YACGTR | 2 cut(s) | 827, 2146 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1844, 2136 |
| BsaI | GGTCTC | 1 cut(s) | 1984 |
| BsaJI | CCNNGG | 3 cut(s) | 1037, 1362, 1363 |
| BsaWI | WCCGGW | 1 cut(s) | 1071 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 802, 832, 1005, 1035 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 130, 297, 298, 365, 516, 872, 1010, 1078, 1894 |
| Bse118I | RCCGGY | 1 cut(s) | 1521 |
| Bse1I | ACTGG | 4 cut(s) | 208, 817, 1162, 1718 |
| Bse3DI | GCAATG | 2 cut(s) | 494, 588 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1844, 2136 |
| BseBI | CCWGG | 2 cut(s) | 1203, 1364 |
| BseDI | CCNNGG | 3 cut(s) | 1037, 1362, 1363 |
| BseGI | GGATG | 3 cut(s) | 651, 669, 1022 |
| BseJI | GATNNNNATC | 2 cut(s) | 1844, 2136 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 130, 297, 298, 365, 516, 872, 1010, 1078, 1894 |
| BseMI | GCAATG | 2 cut(s) | 494, 588 |
| BseMII | CTCAG | 3 cut(s) | 759, 1122, 1217 |
| BseNI | ACTGG | 4 cut(s) | 208, 817, 1162, 1718 |
| BseRI | GAGGAG | 4 cut(s) | 267, 305, 2045, 2180 |
| BseSI | GKGCMC | 2 cut(s) | 482, 505 |
| BseXI | GCAGC | 9 cut(s) | 102, 131, 262, 358, 926, 1342, 1370, 1375, 1449 |
| BseYI | CCCAGC | 2 cut(s) | 358, 740 |
| BsgI | GTGCAG | 1 cut(s) | 1163 |
| Bsh1236I | CGCG | 2 cut(s) | 36, 1971 |
| BshFI | GGCC | 4 cut(s) | 480, 1036, 1231, 1572 |
| BsiHKAI | GWGCWC | 4 cut(s) | 100, 505, 559, 968 |
| BsiSI | CCGG | 3 cut(s) | 157, 1072, 1522 |
| BslFI | GGGAC | 2 cut(s) | 1396, 1942 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 130, 297, 298, 365, 516, 872, 1010, 1078, 1894 |
| BsmAI | GTCTC | 4 cut(s) | 775, 1165, 1984, 2162 |
| BsmBI | CGTCTC | 1 cut(s) | 2162 |
| BsmFI | GGGAC | 2 cut(s) | 1396, 1942 |
| BsmI | GAATGC | 1 cut(s) | 1835 |
| BsnI | GGCC | 4 cut(s) | 480, 1036, 1231, 1572 |
| Bso31I | GGTCTC | 1 cut(s) | 1984 |
| Bsp119I | TTCGAA | 2 cut(s) | 792, 1666 |
| Bsp120I | GGGCCC | 1 cut(s) | 478 |
| Bsp1286I | GDGCHC | 5 cut(s) | 100, 482, 505, 559, 968 |
| Bsp143I | GATC | 5 cut(s) | 904, 1462, 1535, 1681, 2137 |
| BspACI | CCGC | 9 cut(s) | 34, 124, 127, 174, 369, 835, 838, 1495, 1510 |
| BspANI | GGCC | 4 cut(s) | 480, 1036, 1231, 1572 |
| BspCNI | CTCAG | 3 cut(s) | 760, 1123, 1218 |
| BspFNI | CGCG | 2 cut(s) | 36, 1971 |
| BspHI | TCATGA | 1 cut(s) | 2180 |
| BspLI | GGNNCC | 5 cut(s) | 479, 480, 864, 1035, 2105 |
| BspMAI | CTGCAG | 2 cut(s) | 733, 1360 |
| BspPI | GGATC | 1 cut(s) | 1530 |
| BspQI | GCTCTTC | 1 cut(s) | 730 |
| BspT104I | TTCGAA | 2 cut(s) | 792, 1666 |
| BspTI | CTTAAG | 1 cut(s) | 1751 |
| BspTNI | GGTCTC | 1 cut(s) | 1984 |
| BsrBI | CCGCTC | 1 cut(s) | 1512 |
| BsrDI | GCAATG | 2 cut(s) | 494, 588 |
| BsrFI | RCCGGY | 1 cut(s) | 1521 |
| BsrI | ACTGG | 4 cut(s) | 208, 817, 1162, 1718 |
| BssAI | RCCGGY | 1 cut(s) | 1521 |
| BssECI | CCNNGG | 3 cut(s) | 1037, 1362, 1363 |
| BssMI | GATC | 5 cut(s) | 904, 1462, 1535, 1681, 2137 |
| BssT1I | CCWWGG | 1 cut(s) | 1037 |
| Bst2UI | CCWGG | 2 cut(s) | 1203, 1364 |
| Bst4CI | ACNGT | 3 cut(s) | 169, 844, 1217 |
| Bst6I | CTCTTC | 7 cut(s) | 67, 315, 730, 876, 1344, 1635, 2093 |
| BstAFI | CTTAAG | 1 cut(s) | 1751 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 500 |
| BstBAI | YACGTR | 2 cut(s) | 827, 2146 |
| BstBI | TTCGAA | 2 cut(s) | 792, 1666 |
| BstDEI | CTNAG | 3 cut(s) | 768, 1131, 1226 |
| BstF5I | GGATG | 3 cut(s) | 651, 669, 1022 |
| BstFNI | CGCG | 2 cut(s) | 36, 1971 |
| BstHHI | GCGC | 1 cut(s) | 1872 |
| BstKTI | GATC | 5 cut(s) | 907, 1465, 1538, 1684, 2140 |
| BstMAI | GTCTC | 4 cut(s) | 775, 1165, 1984, 2162 |
| BstMBI | GATC | 5 cut(s) | 904, 1462, 1535, 1681, 2137 |
| BstNI | CCWGG | 2 cut(s) | 1203, 1364 |
| BstNSI | RCATGY | 2 cut(s) | 1501, 1766 |
| BstSCI | CCNGG | 3 cut(s) | 155, 1201, 1362 |
| BstSFI | CTRYAG | 3 cut(s) | 729, 1242, 1356 |
| BstSLI | GKGCMC | 2 cut(s) | 482, 505 |
| BstUI | CGCG | 2 cut(s) | 36, 1971 |
| BstV1I | GCAGC | 9 cut(s) | 102, 131, 262, 358, 926, 1342, 1370, 1375, 1449 |
| BstV2I | GAAGAC | 2 cut(s) | 1739, 2132 |
| BstX2I | RGATCY | 1 cut(s) | 1681 |
| BstYI | RGATCY | 1 cut(s) | 1681 |
| BsuRI | GGCC | 4 cut(s) | 480, 1036, 1231, 1572 |
| BtsCI | GGATG | 3 cut(s) | 651, 669, 1022 |
| BtsIMutI | CAGTG | 5 cut(s) | 14, 320, 765, 840, 1725 |
| CciI | TCATGA | 1 cut(s) | 2180 |
| CfoI | GCGC | 1 cut(s) | 1872 |
| Cfr10I | RCCGGY | 1 cut(s) | 1521 |
| Cfr13I | GGNCC | 7 cut(s) | 371, 478, 479, 1034, 1477, 1570, 1897 |
| CseI | GACGC | 2 cut(s) | 25, 28 |
| Csp6I | GTAC | 2 cut(s) | 629, 954 |
| CviQI | GTAC | 2 cut(s) | 629, 954 |
| DdeI | CTNAG | 3 cut(s) | 768, 1131, 1226 |
| DpnI | GATC | 5 cut(s) | 906, 1464, 1537, 1683, 2139 |
| DpnII | GATC | 5 cut(s) | 904, 1462, 1535, 1681, 2137 |
| Eam1104I | CTCTTC | 7 cut(s) | 67, 315, 730, 876, 1344, 1635, 2093 |
| EarI | CTCTTC | 7 cut(s) | 67, 315, 730, 876, 1344, 1635, 2093 |
| EciI | GGCGGA | 2 cut(s) | 113, 384 |
| Eco130I | CCWWGG | 1 cut(s) | 1037 |
| Eco147I | AGGCCT | 1 cut(s) | 1231 |
| Eco24I | GRGCYC | 1 cut(s) | 482 |
| Eco31I | GGTCTC | 1 cut(s) | 1984 |
| Eco32I | GATATC | 1 cut(s) | 595 |
| Eco47I | GGWCC | 3 cut(s) | 371, 1477, 1897 |
| Eco57I | CTGAAG | 1 cut(s) | 124 |
| Eco72I | CACGTG | 1 cut(s) | 827 |
| EcoO109I | RGGNCCY | 4 cut(s) | 478, 479, 1034, 1477 |
| EcoRII | CCWGG | 2 cut(s) | 1201, 1362 |
| EcoRV | GATATC | 1 cut(s) | 595 |
| EcoT14I | CCWWGG | 1 cut(s) | 1037 |
| EcoT38I | GRGCYC | 1 cut(s) | 482 |
| ErhI | CCWWGG | 1 cut(s) | 1037 |
| Esp3I | CGTCTC | 1 cut(s) | 2162 |
| FaqI | GGGAC | 2 cut(s) | 1396, 1942 |
| FauI | CCCGC | 1 cut(s) | 41 |
| FokI | GGATG | 3 cut(s) | 656, 658, 1029 |
| FriOI | GRGCYC | 1 cut(s) | 482 |
| FspBI | CTAG | 5 cut(s) | 218, 281, 1038, 1701, 1815 |
| GlaI | GCGC | 1 cut(s) | 1871 |
| GsaI | CCCAGC | 2 cut(s) | 362, 744 |
| GsuI | CTGGAG | 3 cut(s) | 171, 804, 1760 |
| HaeIII | GGCC | 4 cut(s) | 480, 1036, 1231, 1572 |
| HapII | CCGG | 3 cut(s) | 157, 1072, 1522 |
| HgaI | GACGC | 2 cut(s) | 25, 28 |
| HhaI | GCGC | 1 cut(s) | 1872 |
| Hin6I | GCGC | 1 cut(s) | 1870 |
| HinP1I | GCGC | 1 cut(s) | 1870 |
| HincII | GTYRAC | 2 cut(s) | 832, 1503 |
| HindII | GTYRAC | 2 cut(s) | 832, 1503 |
| HinfI | GANTC | 8 cut(s) | 162, 208, 746, 762, 789, 1088, 1744, 2032 |
| HpaI | GTTAAC | 1 cut(s) | 1503 |
| HpaII | CCGG | 3 cut(s) | 157, 1072, 1522 |
| HphI | GGTGA | 5 cut(s) | 157, 887, 962, 1999, 2041 |
| Hpy166II | GTNNAC | 4 cut(s) | 503, 629, 832, 1503 |
| Hpy188I | TCNGA | 5 cut(s) | 983, 1516, 1540, 1560, 1639 |
| Hpy8I | GTNNAC | 4 cut(s) | 503, 629, 832, 1503 |
| HpyAV | CCTTC | 5 cut(s) | 617, 672, 1024, 1059, 1490 |
| HpyCH4III | ACNGT | 3 cut(s) | 169, 844, 1217 |
| HpyCH4IV | ACGT | 3 cut(s) | 826, 1600, 2145 |
| HpyF3I | CTNAG | 3 cut(s) | 768, 1131, 1226 |
| HpySE526I | ACGT | 3 cut(s) | 826, 1600, 2145 |
| HspAI | GCGC | 1 cut(s) | 1870 |
| KspAI | GTTAAC | 1 cut(s) | 1503 |
| Kzo9I | GATC | 5 cut(s) | 904, 1462, 1535, 1681, 2137 |
| LguI | GCTCTTC | 1 cut(s) | 730 |
| LmnI | GCTCC | 3 cut(s) | 562, 664, 2109 |
| Lsp1109I | GCAGC | 9 cut(s) | 102, 131, 262, 358, 926, 1342, 1370, 1375, 1449 |
| LweI | GCATC | 3 cut(s) | 293, 394, 1102 |
| MaeI | CTAG | 5 cut(s) | 218, 281, 1038, 1701, 1815 |
| MaeII | ACGT | 3 cut(s) | 826, 1600, 2145 |
| MaeIII | GTNAC | 4 cut(s) | 586, 875, 1468, 1696 |
| MalI | GATC | 5 cut(s) | 906, 1464, 1537, 1683, 2139 |
| MbiI | CCGCTC | 1 cut(s) | 1512 |
| MboI | GATC | 5 cut(s) | 904, 1462, 1535, 1681, 2137 |
| MfeI | CAATTG | 2 cut(s) | 1053, 2108 |
| MflI | RGATCY | 1 cut(s) | 1681 |
| MhlI | GDGCHC | 5 cut(s) | 100, 482, 505, 559, 968 |
| MlyI | GAGTC | 2 cut(s) | 756, 1753 |
| MmeI | TCCRAC | 4 cut(s) | 229, 1563, 1583, 1912 |
| MseI | TTAA | 8 cut(s) | 806, 1077, 1383, 1454, 1502, 1586, 1655, 1752 |
| MslI | CAYNNNNRTG | 3 cut(s) | 689, 1401, 1794 |
| MspA1I | CMGCKG | 1 cut(s) | 144 |
| MspCI | CTTAAG | 1 cut(s) | 1751 |
| MspI | CCGG | 3 cut(s) | 157, 1072, 1522 |
| MspR9I | CCNGG | 3 cut(s) | 157, 1203, 1364 |
| MunI | CAATTG | 2 cut(s) | 1053, 2108 |
| Mva1269I | GAATGC | 1 cut(s) | 1835 |
| MvaI | CCWGG | 2 cut(s) | 1203, 1364 |
| MvnI | CGCG | 2 cut(s) | 36, 1971 |
| NciI | CCSGG | 1 cut(s) | 157 |
| NdeII | GATC | 5 cut(s) | 904, 1462, 1535, 1681, 2137 |
| NlaIV | GGNNCC | 5 cut(s) | 479, 480, 864, 1035, 2105 |
| NmuCI | GTSAC | 2 cut(s) | 875, 1468 |
| NspI | RCATGY | 2 cut(s) | 1501, 1766 |
| NspV | TTCGAA | 2 cut(s) | 792, 1666 |
| PagI | TCATGA | 1 cut(s) | 2180 |
| PasI | CCCWGGG | 1 cut(s) | 1363 |
| PceI | AGGCCT | 1 cut(s) | 1231 |
| PciI | ACATGT | 1 cut(s) | 1762 |
| PciSI | GCTCTTC | 1 cut(s) | 730 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 496 |
| PctI | GAATGC | 1 cut(s) | 1835 |
| PfeI | GAWTC | 6 cut(s) | 162, 208, 746, 789, 1088, 2032 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 872, 1894 |
| PleI | GAGTC | 2 cut(s) | 756, 1752 |
| PmaCI | CACGTG | 1 cut(s) | 827 |
| PmlI | CACGTG | 1 cut(s) | 827 |
| PpsI | GAGTC | 2 cut(s) | 756, 1752 |
| Ppu21I | YACGTR | 2 cut(s) | 827, 2146 |
| PpuMI | RGGWCCY | 1 cut(s) | 1477 |
| PscI | ACATGT | 1 cut(s) | 1762 |
| PshBI | ATTAAT | 2 cut(s) | 1383, 1454 |
| Psp5II | RGGWCCY | 1 cut(s) | 1477 |
| Psp6I | CCWGG | 2 cut(s) | 1201, 1362 |
| PspCI | CACGTG | 1 cut(s) | 827 |
| PspFI | CCCAGC | 2 cut(s) | 358, 740 |
| PspGI | CCWGG | 2 cut(s) | 1201, 1362 |
| PspN4I | GGNNCC | 5 cut(s) | 479, 480, 864, 1035, 2105 |
| PspOMI | GGGCCC | 1 cut(s) | 478 |
| PspPI | GGNCC | 7 cut(s) | 371, 478, 479, 1034, 1477, 1570, 1897 |
| PspPPI | RGGWCCY | 1 cut(s) | 1477 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1509, 1541 |
| PstI | CTGCAG | 2 cut(s) | 733, 1360 |
| PsuI | RGATCY | 1 cut(s) | 1681 |
| PvuII | CAGCTG | 1 cut(s) | 144 |
| RsaI | GTAC | 2 cut(s) | 630, 955 |
| RsaNI | GTAC | 2 cut(s) | 629, 954 |
| RseI | CAYNNNNRTG | 3 cut(s) | 689, 1401, 1794 |
| SapI | GCTCTTC | 1 cut(s) | 730 |
| SaqAI | TTAA | 8 cut(s) | 806, 1077, 1383, 1454, 1502, 1586, 1655, 1752 |
| Sau3AI | GATC | 5 cut(s) | 904, 1462, 1535, 1681, 2137 |
| Sau96I | GGNCC | 7 cut(s) | 371, 478, 479, 1034, 1477, 1570, 1897 |
| SbfI | CCTGCAGG | 1 cut(s) | 733 |
| SchI | GAGTC | 2 cut(s) | 756, 1753 |
| ScrFI | CCNGG | 3 cut(s) | 157, 1203, 1364 |
| SdaI | CCTGCAGG | 1 cut(s) | 733 |
| SduI | GDGCHC | 5 cut(s) | 100, 482, 505, 559, 968 |
| SfaNI | GCATC | 3 cut(s) | 293, 394, 1102 |
| SfcI | CTRYAG | 3 cut(s) | 729, 1242, 1356 |
| SfuI | TTCGAA | 2 cut(s) | 792, 1666 |
| SinI | GGWCC | 3 cut(s) | 371, 1477, 1897 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 689, 1401, 1794 |
| SmlI | CTYRAG | 4 cut(s) | 193, 472, 1189, 1751 |
| SmoI | CTYRAG | 4 cut(s) | 193, 472, 1189, 1751 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 733 |
| SseBI | AGGCCT | 1 cut(s) | 1231 |
| SsiI | CCGC | 9 cut(s) | 34, 124, 127, 174, 369, 835, 838, 1495, 1510 |
| SspI | AATATT | 1 cut(s) | 328 |
| SspMI | CTAG | 5 cut(s) | 218, 281, 1038, 1701, 1815 |
| StuI | AGGCCT | 1 cut(s) | 1231 |
| StyD4I | CCNGG | 3 cut(s) | 155, 1201, 1362 |
| StyI | CCWWGG | 1 cut(s) | 1037 |
| TaaI | ACNGT | 3 cut(s) | 169, 844, 1217 |
| TaiI | ACGT | 3 cut(s) | 829, 1603, 2148 |
| TaqI | TCGA | 9 cut(s) | 402, 490, 792, 1120, 1483, 1534, 1630, 1666, 2140 |
| TaqII | GACCGA | 1 cut(s) | 816 |
| TauI | GCSGC | 4 cut(s) | 129, 176, 840, 1512 |
| TfiI | GAWTC | 6 cut(s) | 162, 208, 746, 789, 1088, 2032 |
| Tru1I | TTAA | 8 cut(s) | 806, 1077, 1383, 1454, 1502, 1586, 1655, 1752 |
| Tru9I | TTAA | 8 cut(s) | 806, 1077, 1383, 1454, 1502, 1586, 1655, 1752 |
| TscAI | CASTG | 5 cut(s) | 21, 327, 772, 847, 1725 |
| TseFI | GTSAC | 2 cut(s) | 875, 1468 |
| TseI | GCWGC | 9 cut(s) | 115, 144, 275, 346, 939, 1355, 1358, 1388, 1437 |
| Tsp45I | GTSAC | 2 cut(s) | 875, 1468 |
| TspDTI | ATGAA | 8 cut(s) | 14, 240, 411, 662, 1011, 1362, 1818, 1852 |
| TspGWI | ACGGA | 1 cut(s) | 57 |
| TspRI | CASTG | 5 cut(s) | 21, 327, 772, 847, 1725 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 872, 1894 |
| Vha464I | CTTAAG | 1 cut(s) | 1751 |
| VneI | GTGCAC | 1 cut(s) | 501 |
| VpaK11BI | GGWCC | 3 cut(s) | 371, 1477, 1897 |
| VspI | ATTAAT | 2 cut(s) | 1383, 1454 |
| XapI | RAATTY | 4 cut(s) | 702, 1098, 1632, 1668 |
| XbaI | TCTAGA | 1 cut(s) | 1814 |
| XceI | RCATGY | 2 cut(s) | 1501, 1766 |
| XmaJI | CCTAGG | 1 cut(s) | 1037 |
| XspI | CTAG | 5 cut(s) | 218, 281, 1038, 1701, 1815 |