DNA-directed RNA polymerases I, II, and III subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNA_pol_Rpb5_N | PF03871 | 5 - 90 | 9e-33 | RNA polymerase Rpb5, N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 233 |
| AciI | CCGC | 1 cut(s) | 265 |
| AcyI | GRCGYC | 1 cut(s) | 320 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| AflIII | ACRYGT | 1 cut(s) | 105 |
| AgsI | TTSAA | 1 cut(s) | 124 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 216, 248 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 269, 301 |
| AluBI | AGCT | 1 cut(s) | 395 |
| AluI | AGCT | 1 cut(s) | 395 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 284 |
| AsuHPI | GGTGA | 1 cut(s) | 394 |
| AsuII | TTCGAA | 1 cut(s) | 43 |
| BbsI | GAAGAC | 2 cut(s) | 202, 257 |
| BglII | AGATCT | 1 cut(s) | 157 |
| BmsI | GCATC | 1 cut(s) | 45 |
| BpiI | GAAGAC | 2 cut(s) | 202, 257 |
| Bpu14I | TTCGAA | 1 cut(s) | 43 |
| BsaHI | GRCGYC | 1 cut(s) | 320 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 269, 299 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| Bsp119I | TTCGAA | 1 cut(s) | 43 |
| Bsp143I | GATC | 4 cut(s) | 70, 99, 157, 196 |
| BspACI | CCGC | 1 cut(s) | 265 |
| BspT104I | TTCGAA | 1 cut(s) | 43 |
| BssMI | GATC | 4 cut(s) | 70, 99, 157, 196 |
| BssNI | GRCGYC | 1 cut(s) | 320 |
| Bst4CI | ACNGT | 2 cut(s) | 52, 120 |
| BstACI | GRCGYC | 1 cut(s) | 320 |
| BstBI | TTCGAA | 1 cut(s) | 43 |
| BstDEI | CTNAG | 1 cut(s) | 177 |
| BstKTI | GATC | 4 cut(s) | 73, 102, 160, 199 |
| BstMBI | GATC | 4 cut(s) | 70, 99, 157, 196 |
| BstNSI | RCATGY | 1 cut(s) | 109 |
| BstV2I | GAAGAC | 2 cut(s) | 202, 257 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| BtsIMutI | CAGTG | 1 cut(s) | 349 |
| CseI | GACGC | 1 cut(s) | 328 |
| CviAII | CATG | 3 cut(s) | 106, 145, 268 |
| CviJI | RGCY | 2 cut(s) | 31, 395 |
| CviKI_1 | RGCY | 2 cut(s) | 31, 395 |
| DdeI | CTNAG | 1 cut(s) | 177 |
| DpnI | GATC | 4 cut(s) | 72, 101, 159, 198 |
| DpnII | GATC | 4 cut(s) | 70, 99, 157, 196 |
| Eco32I | GATATC | 1 cut(s) | 351 |
| EcoRV | GATATC | 1 cut(s) | 351 |
| FaeI | CATG | 3 cut(s) | 109, 148, 271 |
| FaiI | YATR | 6 cut(s) | 107, 146, 207, 258, 269, 392 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 350, 382 |
| FatI | CATG | 3 cut(s) | 105, 144, 267 |
| HgaI | GACGC | 1 cut(s) | 328 |
| Hin1I | GRCGYC | 1 cut(s) | 320 |
| Hin1II | CATG | 3 cut(s) | 109, 148, 271 |
| HphI | GGTGA | 1 cut(s) | 394 |
| Hpy188I | TCNGA | 5 cut(s) | 75, 201, 277, 290, 318 |
| Hpy188III | TCNNGA | 3 cut(s) | 218, 241, 354 |
| HpyCH4III | ACNGT | 2 cut(s) | 52, 120 |
| HpyCH4V | TGCA | 2 cut(s) | 58, 329 |
| HpyF3I | CTNAG | 1 cut(s) | 177 |
| Hsp92I | GRCGYC | 1 cut(s) | 320 |
| Hsp92II | CATG | 3 cut(s) | 109, 148, 271 |
| Kzo9I | GATC | 4 cut(s) | 70, 99, 157, 196 |
| LpnPI | CCDG | 3 cut(s) | 231, 349, 365 |
| LweI | GCATC | 1 cut(s) | 45 |
| MaeIII | GTNAC | 2 cut(s) | 185, 301 |
| MalI | GATC | 4 cut(s) | 72, 101, 159, 198 |
| MboI | GATC | 4 cut(s) | 70, 99, 157, 196 |
| MboII | GAAGA | 5 cut(s) | 26, 29, 167, 202, 262 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MluCI | AATT | 1 cut(s) | 76 |
| MmeI | TCCRAC | 1 cut(s) | 67 |
| MnlI | CCTC | 2 cut(s) | 364, 378 |
| MroXI | GAANNNNTTC | 1 cut(s) | 284 |
| MseI | TTAA | 2 cut(s) | 8, 397 |
| NdeII | GATC | 4 cut(s) | 70, 99, 157, 196 |
| NlaIII | CATG | 3 cut(s) | 109, 148, 271 |
| NmuCI | GTSAC | 1 cut(s) | 185 |
| NspI | RCATGY | 1 cut(s) | 109 |
| NspV | TTCGAA | 1 cut(s) | 43 |
| PciI | ACATGT | 1 cut(s) | 105 |
| PdmI | GAANNNNTTC | 1 cut(s) | 284 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 233 |
| PscI | ACATGT | 1 cut(s) | 105 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| SaqAI | TTAA | 2 cut(s) | 8, 397 |
| Sau3AI | GATC | 4 cut(s) | 70, 99, 157, 196 |
| SetI | ASST | 5 cut(s) | 234, 338, 375, 389, 397 |
| SfaNI | GCATC | 1 cut(s) | 45 |
| SfuI | TTCGAA | 1 cut(s) | 43 |
| Sse9I | AATT | 1 cut(s) | 76 |
| SsiI | CCGC | 1 cut(s) | 265 |
| TaaI | ACNGT | 2 cut(s) | 52, 120 |
| TaqI | TCGA | 1 cut(s) | 43 |
| TasI | AATT | 1 cut(s) | 76 |
| Tru1I | TTAA | 2 cut(s) | 8, 397 |
| Tru9I | TTAA | 2 cut(s) | 8, 397 |
| TscAI | CASTG | 1 cut(s) | 349 |
| TseFI | GTSAC | 1 cut(s) | 185 |
| Tsp45I | GTSAC | 1 cut(s) | 185 |
| TspDTI | ATGAA | 4 cut(s) | 161, 263, 284, 379 |
| TspGWI | ACGGA | 1 cut(s) | 150 |
| TspRI | CASTG | 1 cut(s) | 349 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 233 |
| XceI | RCATGY | 1 cut(s) | 109 |
| XmnI | GAANNNNTTC | 1 cut(s) | 284 |