DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 233 |
| AccI | GTMKAC | 1 cut(s) | 476 |
| AciI | CCGC | 2 cut(s) | 265, 607 |
| AclWI | GGATC | 1 cut(s) | 512 |
| AcuI | CTGAAG | 1 cut(s) | 240 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| AflII | CTTAAG | 1 cut(s) | 542 |
| AgsI | TTSAA | 2 cut(s) | 124, 357 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 216, 248 |
| AluBI | AGCT | 3 cut(s) | 192, 293, 496 |
| AluI | AGCT | 3 cut(s) | 192, 293, 496 |
| Alw21I | GWGCWC | 1 cut(s) | 288 |
| Alw26I | GTCTC | 1 cut(s) | 575 |
| AlwI | GGATC | 1 cut(s) | 512 |
| AsuHPI | GGTGA | 3 cut(s) | 409, 523, 592 |
| AsuII | TTCGAA | 1 cut(s) | 43 |
| BauI | CACGAG | 1 cut(s) | 25 |
| BbsI | GAAGAC | 3 cut(s) | 162, 257, 464 |
| Bbv12I | GWGCWC | 1 cut(s) | 288 |
| BceAI | ACGGC | 1 cut(s) | 151 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 506, 540 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BcoDI | GTCTC | 1 cut(s) | 575 |
| BfaI | CTAG | 1 cut(s) | 419 |
| BfmI | CTRYAG | 1 cut(s) | 585 |
| BfrI | CTTAAG | 1 cut(s) | 542 |
| BmsI | GCATC | 2 cut(s) | 45, 439 |
| BpiI | GAAGAC | 3 cut(s) | 162, 257, 464 |
| BpmI | CTGGAG | 1 cut(s) | 488 |
| Bpu10I | CCTNAGC | 1 cut(s) | 426 |
| Bpu14I | TTCGAA | 1 cut(s) | 43 |
| BsaJI | CCNNGG | 1 cut(s) | 500 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| Bse1I | ACTGG | 1 cut(s) | 471 |
| BseDI | CCNNGG | 1 cut(s) | 500 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| BseMII | CTCAG | 3 cut(s) | 301, 417, 438 |
| BseNI | ACTGG | 1 cut(s) | 471 |
| BsiHKAI | GWGCWC | 1 cut(s) | 288 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 233, 370 |
| BsmAI | GTCTC | 1 cut(s) | 575 |
| Bsp119I | TTCGAA | 1 cut(s) | 43 |
| Bsp1286I | GDGCHC | 1 cut(s) | 288 |
| Bsp143I | GATC | 4 cut(s) | 70, 99, 196, 517 |
| BspACI | CCGC | 2 cut(s) | 265, 607 |
| BspCNI | CTCAG | 3 cut(s) | 300, 418, 439 |
| BspMAI | CTGCAG | 1 cut(s) | 589 |
| BspPI | GGATC | 1 cut(s) | 512 |
| BspT104I | TTCGAA | 1 cut(s) | 43 |
| BspTI | CTTAAG | 1 cut(s) | 542 |
| BsrI | ACTGG | 1 cut(s) | 471 |
| BssECI | CCNNGG | 1 cut(s) | 500 |
| BssMI | GATC | 4 cut(s) | 70, 99, 196, 517 |
| BssNAI | GTATAC | 1 cut(s) | 477 |
| BssSI | CACGAG | 1 cut(s) | 25 |
| Bst1107I | GTATAC | 1 cut(s) | 477 |
| Bst2BI | CACGAG | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 3 cut(s) | 52, 120, 481 |
| BstAFI | CTTAAG | 1 cut(s) | 542 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 436 |
| BstBI | TTCGAA | 1 cut(s) | 43 |
| BstDEI | CTNAG | 5 cut(s) | 82, 177, 287, 426, 447 |
| BstEII | GGTNACC | 1 cut(s) | 511 |
| BstKTI | GATC | 4 cut(s) | 73, 102, 199, 520 |
| BstMAI | GTCTC | 1 cut(s) | 575 |
| BstMBI | GATC | 4 cut(s) | 70, 99, 196, 517 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 135, 436 |
| BstNSI | RCATGY | 1 cut(s) | 416 |
| BstPI | GGTNACC | 1 cut(s) | 511 |
| BstSFI | CTRYAG | 1 cut(s) | 585 |
| BstV2I | GAAGAC | 3 cut(s) | 162, 257, 464 |
| BstZ17I | GTATAC | 1 cut(s) | 477 |
| BtsIMutI | CAGTG | 2 cut(s) | 57, 349 |
| CviAII | CATG | 4 cut(s) | 106, 145, 268, 413 |
| CviJI | RGCY | 5 cut(s) | 31, 192, 293, 496, 541 |
| CviKI_1 | RGCY | 5 cut(s) | 31, 192, 293, 496, 541 |
| DdeI | CTNAG | 5 cut(s) | 82, 177, 287, 426, 447 |
| DpnI | GATC | 4 cut(s) | 72, 101, 198, 519 |
| DpnII | GATC | 4 cut(s) | 70, 99, 196, 517 |
| Eco32I | GATATC | 1 cut(s) | 351 |
| Eco57I | CTGAAG | 1 cut(s) | 240 |
| Eco91I | GGTNACC | 1 cut(s) | 511 |
| EcoO65I | GGTNACC | 1 cut(s) | 511 |
| EcoRV | GATATC | 1 cut(s) | 351 |
| FaeI | CATG | 4 cut(s) | 109, 148, 271, 416 |
| FaiI | YATR | 9 cut(s) | 107, 146, 207, 258, 269, 414, 477, 537, 597 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 350, 382 |
| FatI | CATG | 4 cut(s) | 105, 144, 267, 412 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| FblI | GTMKAC | 1 cut(s) | 476 |
| FspBI | CTAG | 1 cut(s) | 419 |
| GsuI | CTGGAG | 1 cut(s) | 488 |
| Hin1II | CATG | 4 cut(s) | 109, 148, 271, 416 |
| HinfI | GANTC | 2 cut(s) | 319, 505 |
| HphI | GGTGA | 3 cut(s) | 409, 523, 592 |
| Hpy166II | GTNNAC | 3 cut(s) | 7, 477, 551 |
| Hpy188I | TCNGA | 8 cut(s) | 75, 196, 201, 277, 290, 318, 504, 572 |
| Hpy188III | TCNNGA | 6 cut(s) | 25, 124, 218, 241, 380, 425 |
| Hpy8I | GTNNAC | 3 cut(s) | 7, 477, 551 |
| HpyCH4III | ACNGT | 3 cut(s) | 52, 120, 481 |
| HpyCH4IV | ACGT | 1 cut(s) | 612 |
| HpyCH4V | TGCA | 4 cut(s) | 58, 329, 527, 587 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 135, 436 |
| HpyF3I | CTNAG | 5 cut(s) | 82, 177, 287, 426, 447 |
| HpySE526I | ACGT | 1 cut(s) | 612 |
| Hsp92II | CATG | 4 cut(s) | 109, 148, 271, 416 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| Kzo9I | GATC | 4 cut(s) | 70, 99, 196, 517 |
| LpnPI | CCDG | 8 cut(s) | 231, 365, 419, 438, 452, 494, 539, 573 |
| LweI | GCATC | 2 cut(s) | 45, 439 |
| MaeI | CTAG | 1 cut(s) | 419 |
| MaeII | ACGT | 1 cut(s) | 612 |
| MaeIII | GTNAC | 2 cut(s) | 301, 511 |
| MalI | GATC | 4 cut(s) | 72, 101, 198, 519 |
| MboI | GATC | 4 cut(s) | 70, 99, 196, 517 |
| MboII | GAAGA | 8 cut(s) | 26, 29, 167, 233, 262, 345, 469, 574 |
| MfeI | CAATTG | 1 cut(s) | 522 |
| MhlI | GDGCHC | 1 cut(s) | 288 |
| MluCI | AATT | 3 cut(s) | 76, 389, 522 |
| MlyI | GAGTC | 1 cut(s) | 313 |
| MmeI | TCCRAC | 2 cut(s) | 67, 595 |
| MnlI | CCTC | 6 cut(s) | 21, 364, 376, 442, 465, 510 |
| MseI | TTAA | 3 cut(s) | 405, 543, 619 |
| MspCI | CTTAAG | 1 cut(s) | 542 |
| MunI | CAATTG | 1 cut(s) | 522 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 135, 436 |
| NdeII | GATC | 4 cut(s) | 70, 99, 196, 517 |
| NlaIII | CATG | 4 cut(s) | 109, 148, 271, 416 |
| NmuCI | GTSAC | 1 cut(s) | 511 |
| NspI | RCATGY | 1 cut(s) | 416 |
| NspV | TTCGAA | 1 cut(s) | 43 |
| PfeI | GAWTC | 1 cut(s) | 505 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 233 |
| PleI | GAGTC | 1 cut(s) | 313 |
| PpsI | GAGTC | 1 cut(s) | 313 |
| PspEI | GGTNACC | 1 cut(s) | 511 |
| PstI | CTGCAG | 1 cut(s) | 589 |
| SaqAI | TTAA | 3 cut(s) | 405, 543, 619 |
| Sau3AI | GATC | 4 cut(s) | 70, 99, 196, 517 |
| SchI | GAGTC | 1 cut(s) | 313 |
| SduI | GDGCHC | 1 cut(s) | 288 |
| SfaNI | GCATC | 2 cut(s) | 45, 439 |
| SfcI | CTRYAG | 1 cut(s) | 585 |
| SfuI | TTCGAA | 1 cut(s) | 43 |
| SmlI | CTYRAG | 1 cut(s) | 542 |
| SmoI | CTYRAG | 1 cut(s) | 542 |
| Sse9I | AATT | 3 cut(s) | 76, 389, 522 |
| SsiI | CCGC | 2 cut(s) | 265, 607 |
| SspI | AATATT | 2 cut(s) | 403, 533 |
| SspMI | CTAG | 1 cut(s) | 419 |
| TaaI | ACNGT | 3 cut(s) | 52, 120, 481 |
| TaiI | ACGT | 1 cut(s) | 615 |
| TaqI | TCGA | 1 cut(s) | 43 |
| TaqII | GACCGA | 1 cut(s) | 530 |
| TasI | AATT | 3 cut(s) | 76, 389, 522 |
| TfiI | GAWTC | 1 cut(s) | 505 |
| Tru1I | TTAA | 3 cut(s) | 405, 543, 619 |
| Tru9I | TTAA | 3 cut(s) | 405, 543, 619 |
| TscAI | CASTG | 2 cut(s) | 57, 349 |
| TseFI | GTSAC | 1 cut(s) | 511 |
| Tsp45I | GTSAC | 1 cut(s) | 511 |
| TspDTI | ATGAA | 3 cut(s) | 161, 263, 284 |
| TspRI | CASTG | 2 cut(s) | 57, 349 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 233 |
| Vha464I | CTTAAG | 1 cut(s) | 542 |
| XceI | RCATGY | 1 cut(s) | 416 |
| XmiI | GTMKAC | 1 cut(s) | 476 |
| XspI | CTAG | 1 cut(s) | 419 |