DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 57, 81, 84 |
| AclWI | GGATC | 1 cut(s) | 446 |
| AcoI | YGGCCR | 1 cut(s) | 506 |
| AfaI | GTAC | 1 cut(s) | 180 |
| AflII | CTTAAG | 1 cut(s) | 476 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 530 |
| AluBI | AGCT | 2 cut(s) | 430, 445 |
| AluI | AGCT | 2 cut(s) | 430, 445 |
| Alw26I | GTCTC | 2 cut(s) | 14, 509 |
| AlwI | GGATC | 1 cut(s) | 446 |
| AoxI | GGCC | 1 cut(s) | 506 |
| ApeKI | GCWGC | 1 cut(s) | 212 |
| AspS9I | GGNCC | 1 cut(s) | 385 |
| AsuHPI | GGTGA | 2 cut(s) | 425, 526 |
| AsuII | TTCGAA | 1 cut(s) | 271 |
| AvaII | GGWCC | 1 cut(s) | 385 |
| BauI | CACGAG | 1 cut(s) | 253 |
| BbvI | GCAGC | 1 cut(s) | 224 |
| BccI | CCATC | 4 cut(s) | 47, 68, 208, 223 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 157, 191 |
| BclI | TGATCA | 2 cut(s) | 319, 424 |
| BcoDI | GTCTC | 2 cut(s) | 14, 509 |
| BfaI | CTAG | 1 cut(s) | 111 |
| BfmI | CTRYAG | 2 cut(s) | 262, 519 |
| BfrI | CTTAAG | 1 cut(s) | 476 |
| BisI | GCNGC | 2 cut(s) | 82, 213 |
| BlsI | GCNGC | 2 cut(s) | 83, 214 |
| Bme18I | GGWCC | 1 cut(s) | 385 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 530 |
| BmgT120I | GGNCC | 1 cut(s) | 385 |
| BmsI | GCATC | 1 cut(s) | 273 |
| Bpu14I | TTCGAA | 1 cut(s) | 271 |
| BseGI | GGATG | 3 cut(s) | 58, 79, 234 |
| BseMII | CTCAG | 1 cut(s) | 162 |
| BseXI | GCAGC | 1 cut(s) | 224 |
| BshFI | GGCC | 1 cut(s) | 508 |
| BsiSI | CCGG | 1 cut(s) | 505 |
| BslFI | GGGAC | 1 cut(s) | 317 |
| BsmAI | GTCTC | 2 cut(s) | 14, 509 |
| BsmBI | CGTCTC | 1 cut(s) | 14 |
| BsmFI | GGGAC | 1 cut(s) | 317 |
| BsnI | GGCC | 1 cut(s) | 508 |
| Bsp119I | TTCGAA | 1 cut(s) | 271 |
| Bsp143I | GATC | 4 cut(s) | 298, 319, 424, 451 |
| BspACI | CCGC | 3 cut(s) | 57, 81, 84 |
| BspANI | GGCC | 1 cut(s) | 508 |
| BspCNI | CTCAG | 1 cut(s) | 163 |
| BspHI | TCATGA | 1 cut(s) | 322 |
| BspMAI | CTGCAG | 1 cut(s) | 523 |
| BspPI | GGATC | 1 cut(s) | 446 |
| BspT104I | TTCGAA | 1 cut(s) | 271 |
| BspTI | CTTAAG | 1 cut(s) | 476 |
| BssMI | GATC | 4 cut(s) | 298, 319, 424, 451 |
| BssSI | CACGAG | 1 cut(s) | 253 |
| Bst2BI | CACGAG | 1 cut(s) | 253 |
| Bst4CI | ACNGT | 2 cut(s) | 280, 542 |
| Bst6I | CTCTTC | 1 cut(s) | 401 |
| BstAFI | CTTAAG | 1 cut(s) | 476 |
| BstBI | TTCGAA | 1 cut(s) | 271 |
| BstC8I | GCNNGC | 1 cut(s) | 166 |
| BstDEI | CTNAG | 1 cut(s) | 171 |
| BstF5I | GGATG | 3 cut(s) | 58, 79, 234 |
| BstKTI | GATC | 4 cut(s) | 301, 322, 427, 454 |
| BstMAI | GTCTC | 2 cut(s) | 14, 509 |
| BstMBI | GATC | 4 cut(s) | 298, 319, 424, 451 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 161, 221 |
| BstSFI | CTRYAG | 2 cut(s) | 262, 519 |
| BstV1I | GCAGC | 1 cut(s) | 224 |
| BsuRI | GGCC | 1 cut(s) | 508 |
| BtsCI | GGATG | 3 cut(s) | 58, 79, 234 |
| BtsI | GCAGTG | 1 cut(s) | 162 |
| BtsIMutI | CAGTG | 4 cut(s) | 162, 168, 189, 285 |
| Cac8I | GCNNGC | 1 cut(s) | 166 |
| CciI | TCATGA | 1 cut(s) | 322 |
| Cfr13I | GGNCC | 1 cut(s) | 385 |
| Csp6I | GTAC | 1 cut(s) | 179 |
| CviAII | CATG | 3 cut(s) | 323, 334, 373 |
| CviJI | RGCY | 7 cut(s) | 164, 199, 259, 430, 445, 475, 508 |
| CviKI_1 | RGCY | 7 cut(s) | 164, 199, 259, 430, 445, 475, 508 |
| CviQI | GTAC | 1 cut(s) | 179 |
| DdeI | CTNAG | 1 cut(s) | 171 |
| DpnI | GATC | 4 cut(s) | 300, 321, 426, 453 |
| DpnII | GATC | 4 cut(s) | 298, 319, 424, 451 |
| DriI | GACNNNNNGTC | 1 cut(s) | 530 |
| EaeI | YGGCCR | 1 cut(s) | 506 |
| Eam1104I | CTCTTC | 1 cut(s) | 401 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 530 |
| EarI | CTCTTC | 1 cut(s) | 401 |
| Eco47I | GGWCC | 1 cut(s) | 385 |
| EcoO109I | RGGNCCY | 1 cut(s) | 385 |
| Esp3I | CGTCTC | 1 cut(s) | 14 |
| FaeI | CATG | 3 cut(s) | 326, 337, 376 |
| FaiI | YATR | 6 cut(s) | 264, 324, 335, 363, 374, 531 |
| FaqI | GGGAC | 1 cut(s) | 317 |
| FatI | CATG | 3 cut(s) | 322, 333, 372 |
| FbaI | TGATCA | 2 cut(s) | 319, 424 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 213 |
| FokI | GGATG | 3 cut(s) | 65, 86, 241 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 213 |
| FspBI | CTAG | 1 cut(s) | 111 |
| GluI | GCNGC | 2 cut(s) | 82, 213 |
| HaeIII | GGCC | 1 cut(s) | 508 |
| HapII | CCGG | 1 cut(s) | 505 |
| Hin1II | CATG | 3 cut(s) | 326, 337, 376 |
| HinfI | GANTC | 3 cut(s) | 4, 140, 419 |
| HpaII | CCGG | 1 cut(s) | 505 |
| HphI | GGTGA | 2 cut(s) | 425, 526 |
| Hpy166II | GTNNAC | 1 cut(s) | 485 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 136, 424 |
| Hpy188III | TCNNGA | 3 cut(s) | 253, 302, 323 |
| Hpy8I | GTNNAC | 1 cut(s) | 485 |
| HpyAV | CCTTC | 1 cut(s) | 396 |
| HpyCH4III | ACNGT | 2 cut(s) | 280, 542 |
| HpyCH4IV | ACGT | 1 cut(s) | 546 |
| HpyCH4V | TGCA | 3 cut(s) | 286, 461, 521 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 161, 221 |
| HpyF3I | CTNAG | 1 cut(s) | 171 |
| HpySE526I | ACGT | 1 cut(s) | 546 |
| Hsp92II | CATG | 3 cut(s) | 326, 337, 376 |
| Ksp22I | TGATCA | 2 cut(s) | 319, 424 |
| Kzo9I | GATC | 4 cut(s) | 298, 319, 424, 451 |
| LpnPI | CCDG | 3 cut(s) | 150, 507, 518 |
| Lsp1109I | GCAGC | 1 cut(s) | 224 |
| LweI | GCATC | 1 cut(s) | 273 |
| MaeI | CTAG | 1 cut(s) | 111 |
| MaeII | ACGT | 1 cut(s) | 546 |
| MaeIII | GTNAC | 4 cut(s) | 187, 413, 532, 542 |
| MalI | GATC | 4 cut(s) | 300, 321, 426, 453 |
| MboI | GATC | 4 cut(s) | 298, 319, 424, 451 |
| MboII | GAAGA | 5 cut(s) | 149, 254, 257, 418, 508 |
| MfeI | CAATTG | 1 cut(s) | 456 |
| MluCI | AATT | 2 cut(s) | 312, 456 |
| MlyI | GAGTC | 1 cut(s) | 428 |
| MmeI | TCCRAC | 1 cut(s) | 104 |
| MseI | TTAA | 2 cut(s) | 351, 477 |
| MslI | CAYNNNNRTG | 1 cut(s) | 338 |
| MspA1I | CMGCKG | 1 cut(s) | 445 |
| MspCI | CTTAAG | 1 cut(s) | 476 |
| MspI | CCGG | 1 cut(s) | 505 |
| MunI | CAATTG | 1 cut(s) | 456 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 161, 221 |
| NdeII | GATC | 4 cut(s) | 298, 319, 424, 451 |
| NlaIII | CATG | 3 cut(s) | 326, 337, 376 |
| NmuCI | GTSAC | 3 cut(s) | 187, 413, 532 |
| NspV | TTCGAA | 1 cut(s) | 271 |
| PagI | TCATGA | 1 cut(s) | 322 |
| PfeI | GAWTC | 1 cut(s) | 140 |
| PflFI | GACNNNGTC | 1 cut(s) | 340 |
| PkrI | GCNGC | 2 cut(s) | 83, 214 |
| PleI | GAGTC | 1 cut(s) | 427 |
| PpsI | GAGTC | 1 cut(s) | 427 |
| PpuMI | RGGWCCY | 1 cut(s) | 385 |
| Psp5II | RGGWCCY | 1 cut(s) | 385 |
| PspPI | GGNCC | 1 cut(s) | 385 |
| PspPPI | RGGWCCY | 1 cut(s) | 385 |
| PstI | CTGCAG | 1 cut(s) | 523 |
| PsyI | GACNNNGTC | 1 cut(s) | 340 |
| PvuII | CAGCTG | 1 cut(s) | 445 |
| RsaI | GTAC | 1 cut(s) | 180 |
| RsaNI | GTAC | 1 cut(s) | 179 |
| RseI | CAYNNNNRTG | 1 cut(s) | 338 |
| SaqAI | TTAA | 2 cut(s) | 351, 477 |
| SatI | GCNGC | 2 cut(s) | 82, 213 |
| Sau3AI | GATC | 4 cut(s) | 298, 319, 424, 451 |
| Sau96I | GGNCC | 1 cut(s) | 385 |
| SchI | GAGTC | 1 cut(s) | 428 |
| SetI | ASST | 9 cut(s) | 133, 177, 184, 330, 390, 432, 447, 539, 549 |
| SfaNI | GCATC | 1 cut(s) | 273 |
| SfcI | CTRYAG | 2 cut(s) | 262, 519 |
| SfuI | TTCGAA | 1 cut(s) | 271 |
| SinI | GGWCC | 1 cut(s) | 385 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 338 |
| SmlI | CTYRAG | 1 cut(s) | 476 |
| SmoI | CTYRAG | 1 cut(s) | 476 |
| Sse9I | AATT | 2 cut(s) | 312, 456 |
| SsiI | CCGC | 3 cut(s) | 57, 81, 84 |
| SspMI | CTAG | 1 cut(s) | 111 |
| TaaI | ACNGT | 2 cut(s) | 280, 542 |
| TaiI | ACGT | 1 cut(s) | 549 |
| TaqI | TCGA | 1 cut(s) | 271 |
| TasI | AATT | 2 cut(s) | 312, 456 |
| TauI | GCSGC | 1 cut(s) | 84 |
| TfiI | GAWTC | 1 cut(s) | 140 |
| Tru1I | TTAA | 2 cut(s) | 351, 477 |
| Tru9I | TTAA | 2 cut(s) | 351, 477 |
| TscAI | CASTG | 4 cut(s) | 162, 175, 196, 285 |
| TseFI | GTSAC | 3 cut(s) | 187, 413, 532 |
| TseI | GCWGC | 1 cut(s) | 212 |
| Tsp45I | GTSAC | 3 cut(s) | 187, 413, 532 |
| TspDTI | ATGAA | 1 cut(s) | 389 |
| TspRI | CASTG | 4 cut(s) | 162, 175, 196, 285 |
| Tth111I | GACNNNGTC | 1 cut(s) | 340 |
| Vha464I | CTTAAG | 1 cut(s) | 476 |
| VpaK11BI | GGWCC | 1 cut(s) | 385 |
| XspI | CTAG | 1 cut(s) | 111 |