Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000701

Physical Location & Seq

Genomic Coordinates Reverse (-)

36479009 .. 36481172

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGAGAGAACATGTAAAGGGATGACCTTACTATCAATAGAAGGAAGTGAGATTTATGTGTTTTTCCCTGATGAACCAAAAATAGGGGTCAAGACAATCAAGAATTACATCAAACGCTTGGTTCAGGAGGATACAGACAAAGCCATCGTGCTTATTCAACAACATCTGACTCCCTTTGGAAAGCGCTTCATAAGTGATATGAGATCAAAGTACTACTTGGAGGTTTTCCAGGAGGCAGAATTGTTGGTTCAAGAACATGTTCTAGTTCCTGAGCATAAGGATCTTAAAAATGAGGAAAAGAAGACATTGCTGGAGAGGTTTCGACTATCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

111

Amino Acids

13.19

Weight (kDa)

7.84

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22320
fragaria_vesca	FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica	MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica	Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis	pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis	RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata	RLG00000003175 RLG00000029644
rosa_multiflora	Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii	Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa	Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha	Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana	Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	212
AfeI	AGCGCT	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	2 cut(s)	11, 256
AgsI	TTSAA	2 cut(s)	158, 251
AjnI	CCWGG	1 cut(s)	228
AlwI	GGATC	1 cut(s)	288
Aor51HI	AGCGCT	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	308
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	230
BciVI	GTATCC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	187
BfuI	GTATCC	1 cut(s)	124
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	203, 280
BspCNI	CTCAG	1 cut(s)	262
BspPI	GGATC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	305
BssMI	GATC	2 cut(s)	203, 280
Bst2UI	CCWGG	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	2 cut(s)	206, 283
BstMBI	GATC	2 cut(s)	203, 280
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	2 cut(s)	15, 260
BstSCI	CCNGG	1 cut(s)	228
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	12, 257
CviJI	RGCY	1 cut(s)	143
CviKI_1	RGCY	1 cut(s)	143
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	205, 282
DpnII	GATC	2 cut(s)	203, 280
Eco47III	AGCGCT	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	15, 260
FaiI	YATR	6 cut(s)	13, 57, 191, 200, 258, 276
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	2 cut(s)	11, 256
FokI	GGATG	1 cut(s)	34
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	187
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	15, 260
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	5 cut(s)	91, 100, 125, 251, 269
HpyAV	CCTTC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	15, 260
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	203, 280
LpnPI	CCDG	6 cut(s)	81, 110, 215, 242, 282, 296
MaeI	CTAG	1 cut(s)	263
MalI	GATC	2 cut(s)	205, 282
MboI	GATC	2 cut(s)	203, 280
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	2 cut(s)	103, 239
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	5 cut(s)	121, 214, 226, 286, 309
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
NdeII	GATC	2 cut(s)	203, 280
NlaIII	CATG	2 cut(s)	15, 260
NspI	RCATGY	2 cut(s)	15, 260
PciI	ACATGT	2 cut(s)	11, 256
PdmI	GAANNNNTTC	1 cut(s)	258
PfoI	TCCNGGA	1 cut(s)	228
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PscI	ACATGT	2 cut(s)	11, 256
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	203, 280
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	4 cut(s)	29, 225, 320, 335
Sse9I	AATT	2 cut(s)	103, 239
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	228
TaqI	TCGA	1 cut(s)	322
TasI	AATT	2 cut(s)	103, 239
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	87, 178
XceI	RCATGY	2 cut(s)	15, 260
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	263
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.