Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000701

Physical Location & Seq

Genomic Coordinates Forward (+)

17249253 .. 17249558

Gene Structure 306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTGATTACTGCCCTAGCCAATCTTAATGAGGACTACTCAGAGATAGGTCGAATTGTGGATGATTGCAAAGAGTACATGAGTGCCTTTAACTTTATACAGGTTCGACATATTTTACGTGAAGCAAATAGTGTCGCTCACCGTTTAGCACACTTTGCTAGTTTATCTTATTTTGATGATGTTTGGATTGAAGAGACTCCCTCTATTATTGAGGACATTCTCTTTGCAGATGCATGTAATCATACTCGAGGTTTAGGCACCACGTCCCCCTCGCGGTATAATAATTCCATCAATAATAACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

101

Amino Acids

11.49

Weight (kDa)

4.8

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 53	4.2e-08	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22320
fragaria_vesca	FvH4_5g21560 FvH4_7g09301 FvH4_7g09301
malus_domestica	MD02G1080800.v1.1 MD02G1093900.v1.1 MD15G1208600.v1.1
prunus_persica	Prupe.2G121300_v2.0.a1 Prupe.2G121300_v2.0.a1 Prupe.2G121400_v2.0.a1 Prupe.2G121400_v2.0.a1
pyrus_communis	pycom02g06410 pycom02g07430 pycom15g18470
rosa_chinensis	RchiOBHm_Chr1g0332791 RchiOBHm_Chr1g0344101 RchiOBHm_Chr1g0344151 RchiOBHm_Chr1g0344171 RchiOBHm_Chr1g0345361 RchiOBHm_Chr1g0345421 RchiOBHm_Chr1g0345561 RchiOBHm_Chr1g0345591 RchiOBHm_Chr1g0345671 RchiOBHm_Chr1g0345701 RchiOBHm_Chr1g0345711 RchiOBHm_Chr1g0345721 RchiOBHm_Chr1g0345801 RchiOBHm_Chr1g0345851 RchiOBHm_Chr1g0345901 RchiOBHm_Chr1g0345921 RchiOBHm_Chr1g0345931 RchiOBHm_Chr1g0345951 RchiOBHm_Chr1g0345961 RchiOBHm_Chr7g0208981
rosa_laevigata	RLG00000003175 RLG00000029644
rosa_multiflora	Rmu_co8382943.1_g000001 Rmu_sc0000532.1_g000035 Rmu_sc0001292.1_g000003 Rmu_sc0001349.1_g000004 Rmu_sc0001692.1_g000006 Rmu_sc0001692.1_g000027 Rmu_sc0002329.1_g000024 Rmu_sc0002329.1_g000032 Rmu_sc0004239.1_g000023 Rmu_sc0008115.1_g000011
rosa_roxburghii	Rroxscaffold_3G00238160 Rroxscaffold_3G00249920 Rroxscaffold_4G00310020 Rroxscaffold_4G00317980 Rroxscaffold_5G00344600
rosa_rugosa	Rorug01G0103700 Rorug01G0103800 Rorug01G0103900 Rorug01G0171800 Rorug07G0107800
rosa_samantha	Rh1BG097500 Rh1BG161500 Rh1CG122000 Rh1CG173900 Rh1CG180700 Rh1CG181100 Rh1DG133900 Rh1DG191900 Rh7AG242600 Rh7BG237400 Rh7DG249500
rosa_wichuraiana	Rw1G010510 Rw1G016120 Rw1G016200 Rw1G016220 Rw1G016430 Rw1G016490 Rw7G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AccII	CGCG	1 cut(s)	274
AciI	CCGC	1 cut(s)	274
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	191
AjiI	CACGTC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	246
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AsuHPI	GGTGA	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	257
BccI	CCATC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	17, 159
BmeT110I	CYCGRG	1 cut(s)	246
BmgBI	CACGTC	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	259
BmsI	GCATC	1 cut(s)	220
BplI	GAGNNNNNCTC	4 cut(s)	23, 55, 185, 217
BsaAI	YACGTR	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	274
BshNI	GGYRCC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	237
BstUI	CGCG	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	79, 234
CviJI	RGCY	1 cut(s)	20
CviKI_1	RGCY	1 cut(s)	20
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	2 cut(s)	82, 237
FaiI	YATR	6 cut(s)	80, 98, 111, 235, 243, 279
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	2 cut(s)	78, 233
FokI	GGATG	1 cut(s)	74
FspBI	CTAG	2 cut(s)	17, 159
Hin1II	CATG	2 cut(s)	82, 237
HinfI	GANTC	1 cut(s)	196
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	2 cut(s)	118, 263
HpyCH4V	TGCA	3 cut(s)	69, 227, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	2 cut(s)	118, 263
Hsp92II	CATG	2 cut(s)	82, 237
LpnPI	CCDG	1 cut(s)	86
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	17, 159
MaeII	ACGT	2 cut(s)	118, 263
MboII	GAAGA	1 cut(s)	203
MluCI	AATT	2 cut(s)	54, 283
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	5 cut(s)	25, 205, 211, 242, 280
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	2 cut(s)	27, 90
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	82, 237
NlaIV	GGNNCC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	237
PaeR7I	CTCGAG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	259
PspXI	VCTCGAGB	1 cut(s)	246
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	27, 90
SchI	GAGTC	1 cut(s)	190
SetI	ASST	5 cut(s)	52, 105, 121, 253, 266
SfaNI	GCATC	1 cut(s)	220
Sfr274I	CTCGAG	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	54, 283
SsiI	CCGC	1 cut(s)	274
SspMI	CTAG	2 cut(s)	17, 159
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	121, 266
TaqI	TCGA	3 cut(s)	52, 106, 247
TasI	AATT	2 cut(s)	54, 283
TatI	WGTACW	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	27, 90
Tru9I	TTAA	2 cut(s)	27, 90
XceI	RCATGY	1 cut(s)	237
XhoI	CTCGAG	1 cut(s)	246
XspI	CTAG	2 cut(s)	17, 159
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.