DNA-directed RNA polymerases I, II, and III subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNA_pol_Rpb5_N | PF03871 | 2 - 42 | 2.2e-11 | RNA polymerase Rpb5, N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 89 |
| AcsI | RAATTY | 1 cut(s) | 256 |
| AfaI | GTAC | 1 cut(s) | 218 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 89 |
| AgsI | TTSAA | 3 cut(s) | 186, 213, 241 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 72, 104, 166, 198 |
| ApoI | RAATTY | 1 cut(s) | 256 |
| AspS9I | GGNCC | 1 cut(s) | 13 |
| AsuHPI | GGTGA | 1 cut(s) | 53 |
| AvaII | GGWCC | 1 cut(s) | 13 |
| BclI | TGATCA | 1 cut(s) | 52 |
| Bme18I | GGWCC | 1 cut(s) | 13 |
| BmgT120I | GGNCC | 1 cut(s) | 13 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 89 |
| Bse1I | ACTGG | 1 cut(s) | 235 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 89 |
| BseNI | ACTGG | 1 cut(s) | 235 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 89 |
| Bsp143I | GATC | 1 cut(s) | 52 |
| BsrI | ACTGG | 1 cut(s) | 235 |
| BssMI | GATC | 1 cut(s) | 52 |
| Bst6I | CTCTTC | 2 cut(s) | 29, 101 |
| BstDEI | CTNAG | 1 cut(s) | 154 |
| BstKTI | GATC | 1 cut(s) | 55 |
| BstMBI | GATC | 1 cut(s) | 52 |
| Cfr13I | GGNCC | 1 cut(s) | 13 |
| Csp6I | GTAC | 1 cut(s) | 217 |
| CviAII | CATG | 1 cut(s) | 124 |
| CviQI | GTAC | 1 cut(s) | 217 |
| DdeI | CTNAG | 1 cut(s) | 154 |
| DpnI | GATC | 1 cut(s) | 54 |
| DpnII | GATC | 1 cut(s) | 52 |
| DraI | TTTAAA | 1 cut(s) | 255 |
| Eam1104I | CTCTTC | 2 cut(s) | 29, 101 |
| EarI | CTCTTC | 2 cut(s) | 29, 101 |
| Eco47I | GGWCC | 1 cut(s) | 13 |
| EcoO109I | RGGNCCY | 1 cut(s) | 13 |
| FaeI | CATG | 1 cut(s) | 127 |
| FaiI | YATR | 2 cut(s) | 63, 125 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 206, 238 |
| FatI | CATG | 1 cut(s) | 123 |
| FbaI | TGATCA | 1 cut(s) | 52 |
| Hin1II | CATG | 1 cut(s) | 127 |
| HinfI | GANTC | 2 cut(s) | 47, 127 |
| HphI | GGTGA | 1 cut(s) | 53 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 57 |
| Hpy188III | TCNNGA | 2 cut(s) | 97, 131 |
| HpyF3I | CTNAG | 1 cut(s) | 154 |
| Hsp92II | CATG | 1 cut(s) | 127 |
| Ksp22I | TGATCA | 1 cut(s) | 52 |
| Kzo9I | GATC | 1 cut(s) | 52 |
| LpnPI | CCDG | 3 cut(s) | 87, 116, 248 |
| MaeIII | GTNAC | 2 cut(s) | 41, 110 |
| MalI | GATC | 1 cut(s) | 54 |
| MboI | GATC | 1 cut(s) | 52 |
| MboII | GAAGA | 2 cut(s) | 46, 118 |
| MluCI | AATT | 2 cut(s) | 247, 256 |
| MlyI | GAGTC | 1 cut(s) | 56 |
| MmeI | TCCRAC | 1 cut(s) | 197 |
| MnlI | CCTC | 3 cut(s) | 4, 32, 202 |
| MseI | TTAA | 3 cut(s) | 245, 254, 271 |
| MslI | CAYNNNNRTG | 1 cut(s) | 122 |
| NdeII | GATC | 1 cut(s) | 52 |
| NlaIII | CATG | 1 cut(s) | 127 |
| NmuCI | GTSAC | 1 cut(s) | 41 |
| PfeI | GAWTC | 1 cut(s) | 127 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 89 |
| PleI | GAGTC | 1 cut(s) | 55 |
| PpsI | GAGTC | 1 cut(s) | 55 |
| PpuMI | RGGWCCY | 1 cut(s) | 13 |
| Psp5II | RGGWCCY | 1 cut(s) | 13 |
| PspPI | GGNCC | 1 cut(s) | 13 |
| PspPPI | RGGWCCY | 1 cut(s) | 13 |
| RsaI | GTAC | 1 cut(s) | 218 |
| RsaNI | GTAC | 1 cut(s) | 217 |
| RseI | CAYNNNNRTG | 1 cut(s) | 122 |
| SaqAI | TTAA | 3 cut(s) | 245, 254, 271 |
| Sau3AI | GATC | 1 cut(s) | 52 |
| Sau96I | GGNCC | 1 cut(s) | 13 |
| SchI | GAGTC | 1 cut(s) | 56 |
| SetI | ASST | 3 cut(s) | 18, 43, 194 |
| SgeI | CNNG | 9 cut(s) | 42, 58, 86, 109, 132, 136, 143, 235, 247 |
| SinI | GGWCC | 1 cut(s) | 13 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 122 |
| Sse9I | AATT | 2 cut(s) | 247, 256 |
| TasI | AATT | 2 cut(s) | 247, 256 |
| TfiI | GAWTC | 1 cut(s) | 127 |
| Tru1I | TTAA | 3 cut(s) | 245, 254, 271 |
| Tru9I | TTAA | 3 cut(s) | 245, 254, 271 |
| TseFI | GTSAC | 1 cut(s) | 41 |
| Tsp45I | GTSAC | 1 cut(s) | 41 |
| TspDTI | ATGAA | 3 cut(s) | 17, 119, 140 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 13 |
| XapI | RAATTY | 1 cut(s) | 256 |