Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Reverse (-)

30183428 .. 30186845

Gene Structure 3418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G328100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTGGTTAGAGATCTTCTGCGGTCTGATAATATACAGGTTGTACAGGTGCTTCTTCTCCGACGACGACGACATTTTGGACGTGGAGACCTCTGATTCTAAGGCTCTCTTCTCCGTCGGCGAGAGGCTTGTCAAGCTTTATGGCGGCAAGGTCTATGCGGGCCTCCGGATTCCCGATGCTGATACCGCTACCCCTCAGAATATCGATTTGGTTCTCGTCTCCAAAGGGGAGGCAGTGGTGATAGCCGTCAAGAATTTCTCAGGATTGATCTCAGTCAATCCAGATGGCAGCTGGGTTTGTGAGGGCTACAGTAAACGCAAAACGGAGCACCATCCTGATCCTGTGGCTGAGACTAAAAAACAAGCTTCGATTCTTGAGTCATATCTAGAACAAAGAGGAGTTGCTTTACCAGAAGGATATTTGTCTTGCAAAGTAGTACTTTCCAATCCTAAAGTTTGTACCATTCAGTCAAGCAATTTTCCATCAGAAGTCGTAACCTATGACCAGTGGGTACAGCTGAAACCAGAACCAAAAAGTATGTTTTCTGGTTGGATTAAGGGTGCCTTCCGTGGTGGAAAGAAGGAGATGCAAGAATCTATACATCAGAAGCTTAATTTCATCCTTAGTACGGCTCCAATGTGGGATAGGTTGGAGCTCAAAGGTAATAAGTATGTTCTTGGGGAGTTTCTGGAATTTAAGGGTAAGCAGGAAGATGTCGAGGCTTTGAGAAATATCAAAAGATCAAAAATTAGCCGCCTTATTGTCCAAAAGACGAGCATGCTTGGATTTGCCCCTTCAAGGCTTCAAGTTTTGTACTCTCCTCGTGACTATCGTAGCGAAGGACCTTCAGCTTCTGAGTGGAAGGAAGTAAATGTAAGGTCGAGTACAGAGGTTCTCTTTCAGCCAGAAAGTTCTGATAAACTCCGCAAGTTTAAGCTCGCTTCGATTGTTTCTATGTCACTGAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NERD

Protein Analysis

324

Amino Acids

36.4

Weight (kDa)

8.62

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	560
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	6 cut(s)	21, 144, 158, 186, 754, 925
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	2 cut(s)	253, 692
AcuI	CTGAAG	1 cut(s)	831
AdeI	CACNNNGTG	1 cut(s)	965
AfaI	GTAC	7 cut(s)	44, 438, 460, 513, 628, 815, 886
AfiI	CCNNNNNNNGG	2 cut(s)	628, 798
AgsI	TTSAA	2 cut(s)	798, 806
AjiI	CACGTC	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	8 cut(s)	136, 291, 365, 517, 610, 655, 851, 937
AluI	AGCT	8 cut(s)	136, 291, 365, 517, 610, 655, 851, 937
Alw21I	GWGCWC	2 cut(s)	330, 657
Alw26I	GTCTC	3 cut(s)	80, 223, 344
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	854
Aor13HI	TCCGGA	1 cut(s)	165
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	253, 692
AspS9I	GGNCC	2 cut(s)	160, 842
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	842
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	657
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BauI	CACGAG	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	330, 657
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	3 cut(s)	278, 339, 490
BceAI	ACGGC	2 cut(s)	230, 645
BcoDI	GTCTC	3 cut(s)	80, 223, 344
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	1 cut(s)	307
BglII	AGATCT	1 cut(s)	12
BisI	GCNGC	3 cut(s)	145, 289, 754
BlsI	GCNGC	3 cut(s)	146, 290, 755
BmcAI	AGTACT	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	842
BmgBI	CACGTC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	160, 842
BmiI	GGNNCC	2 cut(s)	562, 633
BmsI	GCATC	2 cut(s)	166, 576
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	568
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	628, 798
Bse1I	ACTGG	1 cut(s)	505
BseAI	TCCGGA	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	2 cut(s)	331, 618
BseLI	CCNNNNNNNGG	2 cut(s)	628, 798
BseMII	CTCAG	6 cut(s)	209, 273, 285, 339, 846, 953
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	2 cut(s)	411, 810
BseXI	GCAGC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	291
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	560
BshVI	ATCGAT	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	330, 657
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	628, 798
BsmAI	GTCTC	3 cut(s)	80, 223, 344
BsmBI	CGTCTC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	162
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	330, 657
Bsp13I	TCCGGA	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	12, 267, 337, 740
BspACI	CCGC	6 cut(s)	21, 144, 158, 186, 754, 925
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	6 cut(s)	208, 272, 284, 340, 847, 954
BspDI	ATCGAT	1 cut(s)	204
BspEI	TCCGGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	562, 633
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	4 cut(s)	12, 267, 337, 740
BssSI	CACGAG	1 cut(s)	822
Bst2BI	CACGAG	1 cut(s)	822
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	42
BstC8I	GCNNGC	3 cut(s)	160, 779, 939
BstDEI	CTNAG	8 cut(s)	99, 195, 259, 271, 348, 623, 855, 962
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	2 cut(s)	331, 618
BstKTI	GATC	4 cut(s)	15, 270, 340, 743
BstMAI	GTCTC	3 cut(s)	80, 223, 344
BstMBI	GATC	4 cut(s)	12, 267, 337, 740
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 185
BstNSI	RCATGY	1 cut(s)	781
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	568
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	331, 618
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	240, 512, 959
Cac8I	GCNNGC	3 cut(s)	160, 779, 939
CaiI	CAGNNNCTG	1 cut(s)	854
Cfr13I	GGNCC	2 cut(s)	160, 842
ClaI	ATCGAT	1 cut(s)	204
Csp6I	GTAC	7 cut(s)	43, 437, 459, 512, 627, 814, 885
CviAII	CATG	1 cut(s)	778
CviQI	GTAC	7 cut(s)	43, 437, 459, 512, 627, 814, 885
DdeI	CTNAG	8 cut(s)	99, 195, 259, 271, 348, 623, 855, 962
DpnI	GATC	4 cut(s)	14, 269, 339, 742
DpnII	GATC	4 cut(s)	12, 267, 337, 740
DraIII	CACNNNGTG	1 cut(s)	965
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	655
Eco24I	GRGCYC	1 cut(s)	657
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	842
Eco53kI	GAGCTC	1 cut(s)	655
Eco57I	CTGAAG	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	655
EcoO109I	RGGNCCY	1 cut(s)	842
EcoT38I	GRGCYC	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	1 cut(s)	781
FalI	AAGNNNNNCTT	6 cut(s)	92, 124, 423, 455, 548, 580
FatI	CATG	1 cut(s)	777
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	145, 289, 754
FokI	GGATG	2 cut(s)	318, 605
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	3 cut(s)	145, 289, 754
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	3 cut(s)	145, 289, 754
GsaI	CCCAGC	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	1 cut(s)	781
HindIII	AAGCTT	3 cut(s)	134, 363, 608
HinfI	GANTC	5 cut(s)	95, 169, 370, 377, 593
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	8 cut(s)	27, 61, 94, 198, 487, 606, 856, 916
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	4 cut(s)	65, 68, 71, 119
HpyAV	CCTTC	7 cut(s)	407, 574, 574, 804, 833, 855, 856
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	429, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 185
HpyF3I	CTNAG	8 cut(s)	99, 195, 259, 271, 348, 623, 855, 962
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	781
Kpn2I	TCCGGA	1 cut(s)	165
Kzo9I	GATC	4 cut(s)	12, 267, 337, 740
LmnI	GCTCC	3 cut(s)	325, 637, 652
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	2 cut(s)	166, 576
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	493, 824, 957
MalI	GATC	4 cut(s)	14, 269, 339, 742
MboI	GATC	4 cut(s)	12, 267, 337, 740
MboII	GAAGA	4 cut(s)	7, 46, 100, 722
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	2 cut(s)	330, 657
MluCI	AATT	5 cut(s)	253, 475, 613, 692, 747
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	3 cut(s)	84, 530, 630
MroI	TCCGGA	1 cut(s)	165
MseI	TTAA	5 cut(s)	555, 612, 696, 933, 970
MspA1I	CMGCKG	2 cut(s)	291, 517
MspI	CCGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	133, 185
NdeII	GATC	4 cut(s)	12, 267, 337, 740
NlaIII	CATG	1 cut(s)	781
NlaIV	GGNNCC	2 cut(s)	562, 633
NmuCI	GTSAC	2 cut(s)	824, 957
NspI	RCATGY	1 cut(s)	781
PaeI	GCATGC	1 cut(s)	781
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PfeI	GAWTC	4 cut(s)	95, 169, 370, 593
PkrI	GCNGC	3 cut(s)	146, 290, 755
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PpuMI	RGGWCCY	1 cut(s)	842
Psp124BI	GAGCTC	1 cut(s)	657
Psp5II	RGGWCCY	1 cut(s)	842
PspFI	CCCAGC	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	562, 633
PspPI	GGNCC	2 cut(s)	160, 842
PspPPI	RGGWCCY	1 cut(s)	842
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	12
PvuII	CAGCTG	2 cut(s)	291, 517
RsaI	GTAC	7 cut(s)	44, 438, 460, 513, 628, 815, 886
RsaNI	GTAC	7 cut(s)	43, 437, 459, 512, 627, 814, 885
SacI	GAGCTC	1 cut(s)	657
SaqAI	TTAA	5 cut(s)	555, 612, 696, 933, 970
SatI	GCNGC	3 cut(s)	145, 289, 754
Sau3AI	GATC	4 cut(s)	12, 267, 337, 740
Sau96I	GGNCC	2 cut(s)	160, 842
ScaI	AGTACT	1 cut(s)	438
SchI	GAGTC	1 cut(s)	386
SduI	GDGCHC	2 cut(s)	330, 657
SfaNI	GCATC	2 cut(s)	166, 576
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	842
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SphI	GCATGC	1 cut(s)	781
Sse9I	AATT	5 cut(s)	253, 475, 613, 692, 747
SsiI	CCGC	6 cut(s)	21, 144, 158, 186, 754, 925
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	1 cut(s)	657
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	5 cut(s)	204, 368, 717, 881, 944
TasI	AATT	5 cut(s)	253, 475, 613, 692, 747
TatI	WGTACW	4 cut(s)	42, 436, 813, 884
TauI	GCSGC	2 cut(s)	147, 756
TfiI	GAWTC	4 cut(s)	95, 169, 370, 593
Tru1I	TTAA	5 cut(s)	555, 612, 696, 933, 970
Tru9I	TTAA	5 cut(s)	555, 612, 696, 933, 970
TscAI	CASTG	3 cut(s)	240, 512, 966
TseFI	GTSAC	2 cut(s)	824, 957
TseI	GCWGC	1 cut(s)	288
Tsp45I	GTSAC	2 cut(s)	824, 957
TspDTI	ATGAA	1 cut(s)	607
TspGWI	ACGGA	3 cut(s)	103, 338, 557
TspRI	CASTG	3 cut(s)	240, 512, 966
VpaK11BI	GGWCC	1 cut(s)	842
XapI	RAATTY	2 cut(s)	253, 692
XbaI	TCTAGA	1 cut(s)	385
XceI	RCATGY	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288
XspI	CTAG	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.