Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Forward (+)

85205364 .. 85206071

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATAGTGTTGCGGGTTCGACGCCACCGTTTGGGAGGCGGAGGTGGAGGCGCGGCGAGGCACCGCGGCTTGGGCCGGGAGGGTTGGGTACGGCCCATCTTCCGGTCCGATCTTCGGGTCCGGGCATTGGGCGTGGGCCTTTCGGGGCTGCAGACTCCACGGTCCCAACAGTTGCCCCAACGCCTTCTACCACAAACCCACCAAAAAACATGGGATTGTGCAAGCCTCCTTCAACTCCACTATTCATCATTCTCACTCTCTCTCTCTCTCACGACCCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTTTCCTCACGGACCTTAACCCCCAAAACCGAGGCCTCTTCTTCCTCCTCCCTCTATTGCCTCTACATTTCCAGGCGTCGAATTCAAATCCTCAACCGCTCAACGCCGGCCAAGACCCACGGCGGTGTGTGCGGATAGCGATGGTGGCCAAGGAGTTTCGGGAACATGGCGGAAATGCAGAAATCTTGACTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

17.99

Weight (kDa)

11.04

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	61
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccBSI	CCGCTC	2 cut(s)	281, 415
AccII	CGCG	2 cut(s)	54, 67
AcoI	YGGCCR	2 cut(s)	424, 462
AcsI	RAATTY	1 cut(s)	397
AcyI	GRCGYC	2 cut(s)	23, 392
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	5 cut(s)	32, 71, 103, 115, 128
AgsI	TTSAA	2 cut(s)	234, 402
AjnI	CCWGG	1 cut(s)	387
AleI	CACNNNNGTG	1 cut(s)	439
AoxI	GGCC	6 cut(s)	74, 93, 137, 349, 424, 462
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	7 cut(s)	74, 94, 106, 119, 137, 163, 328
AsuC2I	CCSGG	2 cut(s)	78, 123
AvaII	GGWCC	4 cut(s)	106, 119, 163, 328
BalI	TGGCCA	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	105, 451
BceAI	ACGGC	2 cut(s)	108, 452
BciT130I	CCWGG	1 cut(s)	389
BcnI	CCSGG	2 cut(s)	78, 123
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	3 cut(s)	55, 68, 150
BlsI	GCNGC	3 cut(s)	56, 69, 151
Bme1390I	CCNGG	3 cut(s)	78, 123, 389
Bme18I	GGWCC	4 cut(s)	106, 119, 163, 328
BmgT120I	GGNCC	7 cut(s)	74, 94, 106, 119, 137, 163, 328
BmiI	GGNNCC	3 cut(s)	63, 120, 165
BmrFI	CCNGG	3 cut(s)	78, 123, 389
BpuMI	CCSGG	2 cut(s)	78, 123
BsaHI	GRCGYC	2 cut(s)	23, 392
BsaJI	CCNNGG	5 cut(s)	65, 159, 346, 434, 465
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 71, 103, 115, 128
Bse118I	RCCGGY	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	5 cut(s)	65, 159, 346, 434, 465
BseLI	CCNNNNNNNGG	5 cut(s)	32, 71, 103, 115, 128
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	136
Bsh1236I	CGCG	2 cut(s)	54, 67
BshFI	GGCC	6 cut(s)	76, 95, 139, 351, 426, 464
BshNI	GGYRCC	1 cut(s)	61
BsiSI	CCGG	4 cut(s)	77, 104, 122, 423
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	5 cut(s)	32, 71, 103, 115, 128
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	6 cut(s)	76, 95, 139, 351, 426, 464
Bsp143I	GATC	1 cut(s)	110
BspANI	GGCC	6 cut(s)	76, 95, 139, 351, 426, 464
BspFNI	CGCG	2 cut(s)	54, 67
BspLI	GGNNCC	3 cut(s)	63, 120, 165
BspMAI	CTGCAG	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	61
BsrBI	CCGCTC	2 cut(s)	281, 415
BsrFI	RCCGGY	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	5 cut(s)	65, 159, 346, 434, 465
BssMI	GATC	1 cut(s)	110
BssNI	GRCGYC	2 cut(s)	23, 392
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	3 cut(s)	30, 163, 172
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	2 cut(s)	23, 392
BstC8I	GCNNGC	2 cut(s)	224, 424
BstDSI	CCRYGG	3 cut(s)	65, 159, 434
BstFNI	CGCG	2 cut(s)	54, 67
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 445, 461
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	3 cut(s)	76, 121, 387
BstSFI	CTRYAG	1 cut(s)	150
BstUI	CGCG	2 cut(s)	54, 67
BstV1I	GCAGC	1 cut(s)	136
BsuRI	GGCC	6 cut(s)	76, 95, 139, 351, 426, 464
BtgI	CCRYGG	3 cut(s)	65, 159, 434
BtgZI	GCGATG	1 cut(s)	470
Cac8I	GCNNGC	2 cut(s)	224, 424
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	7 cut(s)	74, 94, 106, 119, 137, 163, 328
Cfr42I	CCGCGG	1 cut(s)	68
CpoI	CGGWCCG	1 cut(s)	106
CseI	GACGC	2 cut(s)	31, 381
Csp6I	GTAC	1 cut(s)	90
CspI	CGGWCCG	1 cut(s)	106
CviAII	CATG	2 cut(s)	211, 482
CviJI	RGCY	9 cut(s)	70, 76, 95, 139, 149, 226, 351, 426, 464
CviKI_1	RGCY	9 cut(s)	70, 76, 95, 139, 149, 226, 351, 426, 464
CviQI	GTAC	1 cut(s)	90
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	424, 462
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
EciI	GGCGGA	2 cut(s)	55, 501
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	351
Eco47I	GGWCC	4 cut(s)	106, 119, 163, 328
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	2 cut(s)	214, 485
FaiI	YATR	2 cut(s)	212, 483
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	210, 481
FauI	CCCGC	2 cut(s)	7, 286
Fnu4HI	GCNGC	3 cut(s)	55, 68, 150
Fsp4HI	GCNGC	3 cut(s)	55, 68, 150
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	55, 68, 150
HaeIII	GGCC	6 cut(s)	76, 95, 139, 351, 426, 464
HapII	CCGG	4 cut(s)	77, 104, 122, 423
HgaI	GACGC	2 cut(s)	31, 381
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	2 cut(s)	23, 392
Hin1II	CATG	2 cut(s)	214, 485
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	4 cut(s)	77, 104, 122, 423
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	4 cut(s)	272, 476, 502, 510
Hpy99I	CGWCG	2 cut(s)	25, 397
HpyAV	CCTTC	2 cut(s)	195, 240
HpyCH4III	ACNGT	3 cut(s)	30, 163, 172
HpyCH4V	TGCA	3 cut(s)	152, 222, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 445, 461
Hsp92I	GRCGYC	2 cut(s)	23, 392
Hsp92II	CATG	2 cut(s)	214, 485
HspAI	GCGC	1 cut(s)	52
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	110
LpnPI	CCDG	6 cut(s)	90, 117, 135, 374, 401, 436
Lsp1109I	GCAGC	1 cut(s)	136
MalI	GATC	1 cut(s)	112
MbiI	CCGCTC	2 cut(s)	281, 415
MboI	GATC	1 cut(s)	110
MboII	GAAGA	4 cut(s)	92, 105, 346, 349
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	1 cut(s)	397
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	464
MroNI	GCCGGC	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	439
Msp20I	TGGCCA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	4 cut(s)	77, 104, 122, 423
MspR9I	CCNGG	3 cut(s)	78, 123, 389
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	2 cut(s)	54, 67
MwoI	GCNNNNNNNGC	3 cut(s)	73, 445, 461
NaeI	GCCGGC	1 cut(s)	424
NciI	CCSGG	2 cut(s)	78, 123
NdeII	GATC	1 cut(s)	110
NgoMIV	GCCGGC	1 cut(s)	422
NlaIII	CATG	2 cut(s)	214, 485
NlaIV	GGNNCC	3 cut(s)	63, 120, 165
OliI	CACNNNNGTG	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	424
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	56, 69, 151
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	63, 120, 165
PspPI	GGNCC	7 cut(s)	74, 94, 106, 119, 137, 163, 328
PstI	CTGCAG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	439
Rsr2I	CGGWCCG	1 cut(s)	106
RsrII	CGGWCCG	1 cut(s)	106
SacII	CCGCGG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	3 cut(s)	55, 68, 150
Sau3AI	GATC	1 cut(s)	110
Sau96I	GGNCC	7 cut(s)	74, 94, 106, 119, 137, 163, 328
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	78, 123, 389
SetI	ASST	2 cut(s)	47, 333
SfcI	CTRYAG	1 cut(s)	150
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
SinI	GGWCC	4 cut(s)	106, 119, 163, 328
SmiMI	CAYNNNNRTG	1 cut(s)	439
Sse9I	AATT	1 cut(s)	397
SseBI	AGGCCT	1 cut(s)	351
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	3 cut(s)	76, 121, 387
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	3 cut(s)	30, 163, 172
TaqI	TCGA	2 cut(s)	20, 395
TasI	AATT	1 cut(s)	397
TauI	GCSGC	2 cut(s)	57, 70
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	341
Van91I	CCANNNNNTGG	1 cut(s)	32
VpaK11BI	GGWCC	4 cut(s)	106, 119, 163, 328
XapI	RAATTY	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.