Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Reverse (-)

12901343 .. 12902833

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGTCTCGGATTATGGGCTAGAAGCACCAACGAAGACGAAGATGAAGCTCGGATTCGGACCAAATATGAGATTATGGGTGGAAGCACCGACGAAGAAGAAGTTTGCAACATTGAAGATGAAGTATCAATGATGCAAAACATCTCCGGCTTCTGCATTCTATACGACAACGAAATCGAAAAAAAATCTCCGATAGAGGACAGTCCCAGAATTGTCGTATTGGGATCTCATTGGACAGGCGTCGCTGTAATGTTCTCCATCTCCATGACCCAGTCTCTGTTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.77

Weight (kDa)

4.33

Isoelectric Point (pI)

70.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	2 cut(s)	11, 279
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	42
BccI	CCATC	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	11, 279
BfaI	CTAG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	147, 283
BslFI	GGGAC	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	11, 279
BsmFI	GGGAC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	224
BssNI	GRCGYC	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	2 cut(s)	11, 279
BstMBI	GATC	1 cut(s)	224
BstPAI	GACNNNNGTC	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
CaiI	CAGNNNCTG	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	229
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	3 cut(s)	20, 50, 150
CviKI_1	RGCY	3 cut(s)	20, 50, 150
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	60
FaeI	CATG	1 cut(s)	268
FaiI	YATR	5 cut(s)	16, 69, 77, 163, 266
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	1 cut(s)	264
FspBI	CTAG	1 cut(s)	21
HapII	CCGG	2 cut(s)	147, 283
HgaI	GACGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	268
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	2 cut(s)	147, 283
Hpy188I	TCNGA	4 cut(s)	11, 54, 60, 192
Hpy99I	CGWCG	2 cut(s)	95, 245
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	108, 136, 156
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	224
LpnPI	CCDG	4 cut(s)	160, 220, 222, 284
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	21
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	5 cut(s)	47, 53, 107, 110, 128
MflI	RGATCY	1 cut(s)	224
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	1 cut(s)	190
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	2 cut(s)	147, 283
Mva1269I	GAATGC	1 cut(s)	156
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	268
PctI	GAATGC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	55
PflFI	GACNNNGTC	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	224
PsyI	GACNNNGTC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	224
Sau96I	GGNCC	1 cut(s)	60
SetI	ASST	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	123
SgeI	CNNG	8 cut(s)	20, 33, 63, 159, 219, 249, 277, 283
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	210
SspMI	CTAG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	60, 135
Tth111I	GACNNNGTC	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	60
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.