Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Reverse (-)

21424828 .. 21427238

Gene Structure 2411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24540.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTGGTTAGAGATCATCTGCGGGCTGATAATATACAAGTTTTACAGGTGCTTCGTCTCCTCCGATGACGACGACGTCTTGGACGTGGAGACCTCTGATTCCAAGGCTCTCTTCTCCGTTGGCGACAGACTTGCCAAGCTTTACGGCGGCAAGGTCTACGTCGGCCTTCGCATTCCCGATGCTGATACCGCTTCCCCTCAGACCATCGATTTGATCCTCGTCTCCAAAGGGGAGGCAGTGGTCGTGAGTGTAAAGAATTTATCAGGATTAGTTTCAGTGAATGCGGATGGCAGCTGGGTTTGTGAAAGCCACAGTGTTAATCACAAAGCGCACCACCTACCTGACCCTGTGTTGGAGACCAAAAAACAAGCTTCAATTCTTGAATCATATTTAGAACAAAGAGGGTGTGCTTTACCACAAGGATATTTGTCTTGCAAAGTAATACTTTCCCATCCAAAAGTTTGCACCACTCAGTCAAGCAATTTTCCATCAGAAGTTGTAACCTATGACCAGTTGATGCAGCTGAAACCGGAACCACAAAACATGTTTTCTGGTTGGATTAAAGGTGCCTTCCGTGGTGGAAAGAAAGAGATGCAAGAATCTATATGTCAGAAGCTTGATTTCATTCTTAGTACGGCTCCAATATGGGATAGGTTGGAGCTCGAAGGTAGTAAGTATATTCTTGGTGAATTTCTGGAATTTAAGGGTAAGAAGGAAGATGTTCAAGCTTTGAAAGGTATCAAAAGATCAAAAATTGGCCGCCTTGTTGTCCAAAAGACAAGCATTCTTGGATTTGCCCCTTCAAGGCTTCAAGTTCTGTACTCGCCTCGTGATTATCGGAGCGAAGGAGCTTCAGCTTCCAAGTGGATGGAGGTAAATGTAAGGTCTAGTACAGAGGTTCTCTTCCAACCGGAAAATTCTTCTAAAGTCCGCAAGTTTAAGCTCTCTTCAGTCGTCTCTATGTCACTGAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NERD

Protein Analysis

326

Amino Acids

36.13

Weight (kDa)

8.53

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	6 cut(s)	21, 147, 189, 284, 760, 931
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	4 cut(s)	256, 689, 698, 916
AcuI	CTGAAG	2 cut(s)	837, 933
AcyI	GRCGYC	1 cut(s)	75
AdeI	CACNNNGTG	1 cut(s)	971
AfaI	GTAC	3 cut(s)	634, 821, 892
AfiI	CCNNNNNNNGG	2 cut(s)	352, 804
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	6 cut(s)	375, 383, 725, 733, 804, 812
AjiI	CACGTC	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	5 cut(s)	61, 83, 226, 350, 961
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	2 cut(s)	163, 757
ApeKI	GCWGC	2 cut(s)	291, 520
ApoI	RAATTY	4 cut(s)	256, 689, 698, 916
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
Asp700I	GAANNNNTTC	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	663
BauI	CACGAG	1 cut(s)	828
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	303, 532
BccI	CCATC	5 cut(s)	212, 281, 459, 496, 862
BceAI	ACGGC	2 cut(s)	160, 651
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BcoDI	GTCTC	5 cut(s)	61, 83, 226, 350, 961
BfaI	CTAG	1 cut(s)	888
BisI	GCNGC	4 cut(s)	148, 292, 521, 760
BlsI	GCNGC	4 cut(s)	149, 293, 522, 761
BmgBI	CACGTC	1 cut(s)	85
BmiI	GGNNCC	3 cut(s)	534, 568, 639
BmsI	GCATC	3 cut(s)	169, 507, 582
Bsa29I	ATCGAT	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	2 cut(s)	83, 350
BsaJI	CCNNGG	2 cut(s)	102, 574
BsaWI	WCCGGW	2 cut(s)	529, 910
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 804
Bse1I	ACTGG	1 cut(s)	511
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	102, 574
BseGI	GGATG	3 cut(s)	292, 451, 873
BseLI	CCNNNNNNNGG	2 cut(s)	352, 804
BseMII	CTCAG	3 cut(s)	212, 485, 959
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	303, 532
BseYI	CCCAGC	1 cut(s)	294
BshFI	GGCC	2 cut(s)	165, 759
BshNI	GGYRCC	1 cut(s)	566
BshVI	ATCGAT	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	663
BsiSI	CCGG	2 cut(s)	530, 911
BslI	CCNNNNNNNGG	2 cut(s)	352, 804
BsmAI	GTCTC	5 cut(s)	61, 83, 226, 350, 961
BsmBI	CGTCTC	3 cut(s)	61, 226, 961
BsmI	GAATGC	3 cut(s)	171, 286, 783
BsnI	GGCC	2 cut(s)	165, 759
Bso31I	GGTCTC	2 cut(s)	83, 350
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	3 cut(s)	12, 213, 746
BspACI	CCGC	6 cut(s)	21, 147, 189, 284, 760, 931
BspANI	GGCC	2 cut(s)	165, 759
BspCNI	CTCAG	3 cut(s)	211, 484, 960
BspDI	ATCGAT	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	534, 568, 639
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	566
BspTNI	GGTCTC	2 cut(s)	83, 350
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	2 cut(s)	102, 574
BssMI	GATC	3 cut(s)	12, 213, 746
BssNI	GRCGYC	1 cut(s)	75
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	828
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	3 cut(s)	116, 908, 952
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	4 cut(s)	198, 471, 629, 968
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	292, 451, 873
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	3 cut(s)	15, 216, 749
BstMAI	GTCTC	5 cut(s)	61, 83, 226, 350, 961
BstMBI	GATC	3 cut(s)	12, 213, 746
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	547
BstV1I	GCAGC	2 cut(s)	303, 532
BstXI	CCANNNNNNTGG	1 cut(s)	868
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	165, 759
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	574
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	292, 451, 873
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	4 cut(s)	243, 282, 319, 965
Cac8I	GCNNGC	1 cut(s)	23
CfoI	GCGC	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	3 cut(s)	633, 820, 891
CviAII	CATG	1 cut(s)	544
CviQI	GTAC	3 cut(s)	633, 820, 891
DdeI	CTNAG	4 cut(s)	198, 471, 629, 968
DpnI	GATC	3 cut(s)	14, 215, 748
DpnII	GATC	3 cut(s)	12, 213, 746
DraIII	CACNNNGTG	1 cut(s)	971
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	3 cut(s)	116, 908, 952
EarI	CTCTTC	3 cut(s)	116, 908, 952
Ecl136II	GAGCTC	1 cut(s)	661
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	663
Eco31I	GGTCTC	2 cut(s)	83, 350
Eco53kI	GAGCTC	1 cut(s)	661
Eco57I	CTGAAG	2 cut(s)	837, 933
EcoICRI	GAGCTC	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	102
Esp3I	CGTCTC	3 cut(s)	61, 226, 961
FaeI	CATG	1 cut(s)	547
FaiI	YATR	9 cut(s)	34, 388, 507, 545, 605, 607, 646, 678, 962
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 429, 461
FatI	CATG	1 cut(s)	543
FauI	CCCGC	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	148, 292, 521, 760
FokI	GGATG	3 cut(s)	299, 438, 880
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	4 cut(s)	148, 292, 521, 760
FspBI	CTAG	1 cut(s)	888
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	4 cut(s)	148, 292, 521, 760
GsaI	CCCAGC	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	165, 759
HapII	CCGG	2 cut(s)	530, 911
HhaI	GCGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	547
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HindIII	AAGCTT	4 cut(s)	137, 369, 614, 726
HinfI	GANTC	3 cut(s)	98, 383, 599
HpaII	CCGG	2 cut(s)	530, 911
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	6 cut(s)	64, 97, 201, 493, 612, 840
Hpy188III	TCNNGA	6 cut(s)	176, 244, 264, 380, 695, 830
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	3 cut(s)	74, 77, 164
HpyAV	CCTTC	6 cut(s)	176, 580, 659, 706, 810, 839
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	3 cut(s)	75, 84, 159
HpyCH4V	TGCA	4 cut(s)	435, 465, 520, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	4 cut(s)	198, 471, 629, 968
HpySE526I	ACGT	3 cut(s)	75, 84, 159
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	547
HspAI	GCGC	1 cut(s)	329
Kzo9I	GATC	3 cut(s)	12, 213, 746
LmnI	GCTCC	4 cut(s)	643, 658, 840, 848
Lsp1109I	GCAGC	2 cut(s)	303, 532
LweI	GCATC	3 cut(s)	169, 507, 582
MaeI	CTAG	1 cut(s)	888
MaeII	ACGT	3 cut(s)	75, 84, 159
MaeIII	GTNAC	2 cut(s)	499, 963
MalI	GATC	3 cut(s)	14, 215, 748
MboI	GATC	3 cut(s)	12, 213, 746
MboII	GAAGA	5 cut(s)	103, 728, 895, 912, 939
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	7 cut(s)	256, 375, 481, 689, 698, 753, 916
MmeI	TCCRAC	4 cut(s)	333, 536, 636, 931
MnlI	CCTC	9 cut(s)	70, 103, 207, 226, 227, 395, 837, 865, 889
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	5 cut(s)	318, 561, 702, 939, 976
MspA1I	CMGCKG	2 cut(s)	294, 523
MspI	CCGG	2 cut(s)	530, 911
Mva1269I	GAATGC	3 cut(s)	171, 286, 783
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	3 cut(s)	12, 213, 746
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	3 cut(s)	534, 568, 639
NmuCI	GTSAC	1 cut(s)	963
NspI	RCATGY	1 cut(s)	547
PciI	ACATGT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 81
PctI	GAATGC	3 cut(s)	171, 286, 783
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	98, 383, 599
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	149, 293, 522, 761
PscI	ACATGT	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	534, 568, 639
PsyI	GACNNNGTC	1 cut(s)	74
PvuII	CAGCTG	2 cut(s)	294, 523
RsaI	GTAC	3 cut(s)	634, 821, 892
RsaNI	GTAC	3 cut(s)	633, 820, 891
SacI	GAGCTC	1 cut(s)	663
SaqAI	TTAA	5 cut(s)	318, 561, 702, 939, 976
SatI	GCNGC	4 cut(s)	148, 292, 521, 760
Sau3AI	GATC	3 cut(s)	12, 213, 746
SduI	GDGCHC	1 cut(s)	663
SfaNI	GCATC	3 cut(s)	169, 507, 582
Sse9I	AATT	7 cut(s)	256, 375, 481, 689, 698, 753, 916
SsiI	CCGC	6 cut(s)	21, 147, 189, 284, 760, 931
SspMI	CTAG	1 cut(s)	888
SstI	GAGCTC	1 cut(s)	663
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	3 cut(s)	78, 87, 162
TaqI	TCGA	2 cut(s)	207, 663
TasI	AATT	7 cut(s)	256, 375, 481, 689, 698, 753, 916
TatI	WGTACW	2 cut(s)	819, 890
TauI	GCSGC	2 cut(s)	150, 762
TfiI	GAWTC	3 cut(s)	98, 383, 599
Tru1I	TTAA	5 cut(s)	318, 561, 702, 939, 976
Tru9I	TTAA	5 cut(s)	318, 561, 702, 939, 976
TscAI	CASTG	4 cut(s)	243, 282, 319, 972
TseFI	GTSAC	1 cut(s)	963
TseI	GCWGC	2 cut(s)	291, 520
Tsp45I	GTSAC	1 cut(s)	963
TspDTI	ATGAA	1 cut(s)	613
TspGWI	ACGGA	2 cut(s)	106, 563
TspRI	CASTG	4 cut(s)	243, 282, 319, 972
Tth111I	GACNNNGTC	1 cut(s)	74
XapI	RAATTY	4 cut(s)	256, 689, 698, 916
XceI	RCATGY	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	1 cut(s)	888
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.