RLG00000011153

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003421
Physical Location & Seq
Forward (+)
7151658 .. 7152053
396 bp
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UTR
Exon/CDS
Intron
RLM00000011153

Sequence Viewer

Length: 396 bp
ATGCGAGCCAAGAATCCCTCATTTCTCAATGCTCACTTTCCTCACCAAACCTTAACCCCAAAACCAGAGGCCTCTTCTTCCTCTATTGCCTCTAAATTTTCAGGGGTCGGATTTAAATCCTCAACGCCGGTCGAGACCAGTACTATTCCAGCAAATCAATCAATGGGCCTCAGAATATGGGCTGGGAGCATCGAGGAAGACGAAGATGAAGCCCAGATTATGACCGTTTTAGAGATGATTGCGATCCTGGGGAAGGGTTTCGATGGAGTCGGAGAGACTTTCTTAGCTTCCGGAGCAGAACTTCCCCAAGATTTTGAGAAACTTCACAAGAACGCTCATCTGGAGATTAGTAGGGTCTCGAAGAAGTTTGCAGCGTTGAAGAGGAAGTACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.29

Weight (kDa)

6.91

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 290
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 2 cut(s) 142, 389
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 1 cut(s) 379
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw26I GTCTC 3 cut(s) 128, 269, 361
AlwI GGATC 1 cut(s) 238
Aor13HI TCCGGA 1 cut(s) 290
AoxI GGCC 2 cut(s) 69, 166
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 35
BarI GAAGNNNNNNTAC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 383
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 3 cut(s) 128, 269, 361
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 362
BsaBI GATNNNNATC 2 cut(s) 115, 242
BsaI GGTCTC 2 cut(s) 128, 361
BsaJI CCNNGG 1 cut(s) 247
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 138
Bse8I GATNNNNATC 2 cut(s) 115, 242
BseAI TCCGGA 1 cut(s) 290
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 247
BseJI GATNNNNATC 2 cut(s) 115, 242
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 383
BseYI CCCAGC 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 71, 168
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 128, 291
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 3 cut(s) 128, 269, 361
BsnI GGCC 2 cut(s) 71, 168
Bso31I GGTCTC 2 cut(s) 128, 361
Bsp13I TCCGGA 1 cut(s) 290
Bsp143I GATC 1 cut(s) 243
BspANI GGCC 2 cut(s) 71, 168
BspCNI CTCAG 1 cut(s) 183
BspEI TCCGGA 1 cut(s) 290
BspPI GGATC 1 cut(s) 238
BspTNI GGTCTC 2 cut(s) 128, 361
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 79, 374
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 170, 283
BstENI CCTNNNNNAGG 1 cut(s) 251
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 3 cut(s) 128, 269, 361
BstMBI GATC 1 cut(s) 243
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 204
BsuRI GGCC 2 cut(s) 71, 168
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 2 cut(s) 141, 388
CviJI RGCY 6 cut(s) 8, 71, 168, 182, 212, 287
CviKI_1 RGCY 6 cut(s) 8, 71, 168, 182, 212, 287
CviQI GTAC 2 cut(s) 141, 388
DdeI CTNAG 2 cut(s) 170, 283
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
DraI TTTAAA 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 79, 374
EarI CTCTTC 2 cut(s) 79, 374
Eco147I AGGCCT 1 cut(s) 71
Eco31I GGTCTC 2 cut(s) 128, 361
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 246
FaiI YATR 2 cut(s) 178, 221
Fnu4HI GCNGC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 372
GluI GCNGC 1 cut(s) 372
GsaI CCCAGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 2 cut(s) 71, 168
HapII CCGG 2 cut(s) 128, 291
HinfI GANTC 2 cut(s) 13, 267
HpaII CCGG 2 cut(s) 128, 291
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 3 cut(s) 110, 173, 272
Hpy188III TCNNGA 4 cut(s) 133, 291, 341, 358
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 2 cut(s) 170, 283
Kpn2I TCCGGA 1 cut(s) 290
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 2 cut(s) 186, 293
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 1 cut(s) 198
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 6 cut(s) 66, 69, 209, 215, 373, 391
MluCI AATT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 2 cut(s) 88, 250
MroI TCCGGA 1 cut(s) 290
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 2 cut(s) 53, 114
MspI CCGG 2 cut(s) 128, 291
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 1 cut(s) 243
PceI AGGCCT 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 246
PspPI GGNCC 1 cut(s) 166
RsaI GTAC 2 cut(s) 142, 389
RsaNI GTAC 2 cut(s) 141, 388
SaqAI TTAA 2 cut(s) 53, 114
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 166
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 248
SetI ASST 2 cut(s) 53, 289
SfaNI GCATC 1 cut(s) 198
SmiI ATTTAAAT 1 cut(s) 115
Sse9I AATT 1 cut(s) 95
SseBI AGGCCT 1 cut(s) 71
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 246
SwaI ATTTAAAT 1 cut(s) 115
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 4 cut(s) 132, 192, 261, 359
TasI AATT 1 cut(s) 95
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 2 cut(s) 53, 114
Tru9I TTAA 2 cut(s) 53, 114
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 1 cut(s) 222
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.