Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Reverse (-)

20554610 .. 20555026

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG213200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCGAGCTAAGAATCCCTCATTTCTCAGTTCTCACTTTCCTCACCAGACCTTAACCCCCAAAACCAAAGGCCTCTTCTTCCTCCTCCCTCTATTGCCTCTACATTTCCAGGCGTCTGATTCAAATCCTCAAAGGCTCAACGCCGGCCGAGACCCACAGCGCGCTGTATCCGATAATCAATCGATGGGTCTTAGATTATGGGCTGGAAGCACCGACGAAGACGAAGATGAAGCTCAGATTCAGACCAAATCTAAGATGATTGTGATCCTGGGGAAGGGTTTCGATGGAGTAGGAGAGGCTTTCTTCGCTTCCGGAGTGGAACTTCACCAAGATTTTGAGGAACTTCACAGGAACGTTCATCTGGAGATGATTAAACTCTCGAAGAAGTTTGCAGCATTGAAGAGGAAGTATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.61

Weight (kDa)

8.96

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AccIII	TCCGGA	1 cut(s)	311
AclI	AACGTT	1 cut(s)	354
AclWI	GGATC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	123, 400
AjnI	CCWGG	2 cut(s)	108, 267
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	2 cut(s)	8, 233
AluI	AGCT	2 cut(s)	8, 233
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	259
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	2 cut(s)	70, 145
ApeKI	GCWGC	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	162, 164
AsuHPI	GGTGA	2 cut(s)	35, 317
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	2 cut(s)	178, 278
BciT130I	CCWGG	2 cut(s)	110, 269
BciVI	GTATCC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	2 cut(s)	110, 269
BmrFI	CCNGG	2 cut(s)	110, 269
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	182
BsaBI	GATNNNNATC	2 cut(s)	123, 263
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	143
Bse8I	GATNNNNATC	2 cut(s)	123, 263
BseAI	TCCGGA	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	110, 269
BseCI	ATCGAT	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	268
BseJI	GATNNNNATC	2 cut(s)	123, 263
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	40, 248
BsePI	GCGCGC	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	74
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	72, 147
BshVI	ATCGAT	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	144, 312
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	72, 147
Bso31I	GGTCTC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	264
BspANI	GGCC	2 cut(s)	72, 147
BspCNI	CTCAG	2 cut(s)	39, 247
BspDI	ATCGAT	1 cut(s)	182
BspEI	TCCGGA	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	162
BspPI	GGATC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	268
BssHII	GCGCGC	1 cut(s)	160
BssMI	GATC	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	113
Bst2UI	CCWGG	2 cut(s)	110, 269
Bst6I	CTCTTC	2 cut(s)	80, 395
BstACI	GRCGYC	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	6, 145, 162
BstDEI	CTNAG	5 cut(s)	9, 26, 191, 234, 252
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	162, 164
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	264
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	2 cut(s)	110, 269
BstSCI	CCNGG	2 cut(s)	108, 267
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	404
BstV2I	GAAGAC	1 cut(s)	225
BstZI	CGGCCG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	72, 147
BsuTUI	ATCGAT	1 cut(s)	182
Cac8I	GCNNGC	3 cut(s)	6, 145, 162
CfoI	GCGC	2 cut(s)	162, 164
Cfr10I	RCCGGY	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	182
CseI	GACGC	1 cut(s)	102
CviJI	RGCY	7 cut(s)	8, 72, 136, 147, 203, 233, 299
CviKI_1	RGCY	7 cut(s)	8, 72, 136, 147, 203, 233, 299
DdeI	CTNAG	5 cut(s)	9, 26, 191, 234, 252
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	80, 395
EarI	CTCTTC	2 cut(s)	80, 395
EclXI	CGGCCG	1 cut(s)	145
Eco147I	AGGCCT	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	144
Eco52I	CGGCCG	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	108, 267
FaiI	YATR	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	393
GlaI	GCGC	2 cut(s)	161, 163
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	72, 147
HapII	CCGG	2 cut(s)	144, 312
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	162, 164
Hin1I	GRCGYC	1 cut(s)	113
Hin6I	GCGC	2 cut(s)	160, 162
HinP1I	GCGC	2 cut(s)	160, 162
HinfI	GANTC	3 cut(s)	13, 119, 238
HpaII	CCGG	2 cut(s)	144, 312
HphI	GGTGA	2 cut(s)	35, 317
Hpy188I	TCNGA	4 cut(s)	118, 172, 237, 243
Hpy188III	TCNNGA	3 cut(s)	312, 362, 379
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	5 cut(s)	9, 26, 191, 234, 252
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	113
HspAI	GCGC	2 cut(s)	160, 162
Kpn2I	TCCGGA	1 cut(s)	311
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	264
Lsp1109I	GCAGC	1 cut(s)	404
MaeII	ACGT	1 cut(s)	354
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	7 cut(s)	67, 70, 230, 236, 295, 394, 412
MroI	TCCGGA	1 cut(s)	311
MroNI	GCCGGC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	53, 372
MspI	CCGG	2 cut(s)	144, 312
MspR9I	CCNGG	2 cut(s)	110, 269
MvaI	CCWGG	2 cut(s)	110, 269
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	305
NaeI	GCCGGC	1 cut(s)	145
NdeII	GATC	1 cut(s)	264
NgoMIV	GCCGGC	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	173
PauI	GCGCGC	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	72
PdiI	GCCGGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	13, 119, 238
PkrI	GCNGC	1 cut(s)	394
Psp1406I	AACGTT	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	108, 267
PspGI	CCWGG	2 cut(s)	108, 267
PteI	GCGCGC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	53, 372
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	110, 269
SetI	ASST	4 cut(s)	10, 53, 235, 357
SseBI	AGGCCT	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	108, 267
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	3 cut(s)	182, 282, 380
TfiI	GAWTC	3 cut(s)	13, 119, 238
Tru1I	TTAA	2 cut(s)	53, 372
Tru9I	TTAA	2 cut(s)	53, 372
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	243, 347
XagI	CCTNNNNNAGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.