Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Reverse (-)

5553266 .. 5560270

Gene Structure 7005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG066100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCTTCGGTTAGTGATTTACAGACTGTACAAGTTGATCTTCTCCGACAGCGACGACGTCTTGGGTGTCGAGACCTCTGATTCTACTGCTCTCTTCGCCATCGCTAACAGGCTCGCTAAGCTCTATGATGGCGACAAGGTTTCAGTTGGCCTCCGGATCCCTGACGCCGATACCGCTTTCCCTAAGCAAATCGATTTGGTTCTCAAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NERD

Protein Analysis

70

Amino Acids

7.75

Weight (kDa)

5.07

Isoelectric Point (pI)

14.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	2 cut(s)	151, 164
AcyI	GRCGYC	2 cut(s)	57, 165
AfaI	GTAC	1 cut(s)	29
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	151, 164
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	1 cut(s)	148
BamHI	GGATCC	1 cut(s)	156
BccI	CCATC	2 cut(s)	107, 122
BcoDI	GTCTC	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	192
BsaHI	GRCGYC	2 cut(s)	57, 165
BsaI	GGTCTC	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	192
BshFI	GGCC	1 cut(s)	150
BshVI	ATCGAT	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	36, 156
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	150
BspDI	ATCGAT	1 cut(s)	192
BspEI	TCCGGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	158
BspPI	GGATC	2 cut(s)	151, 164
BspTNI	GGTCTC	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	27
BssMI	GATC	2 cut(s)	36, 156
BssNI	GRCGYC	2 cut(s)	57, 165
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	2 cut(s)	57, 165
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	117, 183
BstKTI	GATC	2 cut(s)	39, 159
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	36, 156
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 118, 173
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	192
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	28
CviJI	RGCY	3 cut(s)	112, 121, 150
CviKI_1	RGCY	3 cut(s)	112, 121, 150
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	117, 183
DpnI	GATC	2 cut(s)	38, 158
DpnII	GATC	2 cut(s)	36, 156
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	65
FaiI	YATR	1 cut(s)	126
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	2 cut(s)	57, 165
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	46, 79
Hpy188III	TCNNGA	2 cut(s)	70, 154
Hpy99I	CGWCG	2 cut(s)	56, 59
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 118, 173
HpyF3I	CTNAG	2 cut(s)	117, 183
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	2 cut(s)	57, 165
Kpn2I	TCCGGA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	36, 156
LpnPI	CCDG	3 cut(s)	94, 167, 174
MaeII	ACGT	1 cut(s)	57
MalI	GATC	2 cut(s)	38, 158
MboI	GATC	2 cut(s)	36, 156
MboII	GAAGA	2 cut(s)	31, 85
MflI	RGATCY	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	2 cut(s)	85, 161
MroI	TCCGGA	1 cut(s)	153
MspI	CCGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	95, 118, 173
NdeII	GATC	2 cut(s)	36, 156
NlaIV	GGNNCC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	80
PflFI	GACNNNGTC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	156
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
Sau3AI	GATC	2 cut(s)	36, 156
SetI	ASST	4 cut(s)	60, 77, 123, 141
SgeI	CNNG	8 cut(s)	43, 73, 82, 121, 125, 148, 166, 173
SsiI	CCGC	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	27
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	69, 192
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	80
Tth111I	GACNNNGTC	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.