Rw4G037050

Phytosulfokine receptor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
63781853 .. 63784309
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G037050.1

Sequence Viewer

Length: 1185 bp
ATGAACTTCTATGGTGAAGAATTGCCTGCTGATCCAAACCTTCATTTTGCAAAGTTGAAGGTTCTCATTATTGCAAACAGTAGGCTCACAGGTTCATTACCCCAGTGGTTGAGTAAGAGCAGCAGATTGCAGTTATTGGATATATCCTGGAACTACTTGGAAGGTACAGTTCCAGCTTGGTTTGGCAATTTTACTAATCTCTTCTACTTGGACATATCAAACAATTCTTTTACTGGGGATATCCCGAGAAGCTTAACTGGACTACAGGGCCTCATTTATCGGAATGTTTCCGAGGTTCTGGAACCTTCCCCTGATTTTCATTTTTTCCGGAAAAAGAATGCAAGTGCAAGGGGATTGCAGTACAATCAAGTTTGGCGCTTTCCACCGACGCTGGCACTTGGCAACAATTATTTGAGTGGACAGATCTGGCCAGAGTTTGGGAACCTGAAATCCCTTCATGTATTTGATTTAAAATTCAACAATTTATCTGGACCAATTCCAAGTTCTCTTGCTAATATGACCAGCTTAGAGGCTCTGGATTTGTCTCATAACAAGCTTTCAGGAATAATACCCAGTTCACTGACTCGTCTCAGTTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTAGAGGGGGCGATTCCTAGTGGAGTTCAATTTGGACCTTCCCAAATTCAAGCTTTGAAGGGAATAGTCTTTGTGGTGACCTTGCTCCTCAATGTCCATCAAAGACTGTACAAGTTGATCTTCTTTGACGGCGACGACGTCTTGGGTGTCGAGACCTCTGATTCTACTGCTCTCTTCGCCATTGCTGACAAGCTCGCTAAGCTCTATGATGGTGACAAGGTCTTCGTTGGCCTCCGGATCCCCGACGCCGATACCGCTTCCCCTAAGCAAATCTATTTGGTTCTCAAAAGGGAGGCAGTGGAGATAGCCGTCAAGAACTTGTTAGGATTCATCTCTGTCAAGCCCGATGGCAGCTGGGTTTCTGAGAGCATCACTAAGCACAAAGCAGACCAACATCCTGATACTGTCAGTCACTCCAACTCTTCACTCTTCTCGCTGCTACCATACCAAGACAAAGACGAAGACGAAGATGAAGCTCAGATTCAGACCAAATCTGAGATGATTGCGATCCTGGGGAAGGGTTTCGATGGAGTCGGAGAGTCTTTCTTTGCTTCCTGA

Protein Analysis

394

Amino Acids

43.67

Weight (kDa)

5.65

Isoelectric Point (pI)

26.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 42 - 91 1e-06 Leucine rich repeat
LRR_8 PF13855 131 - 186 1.1e-06 Leucine rich repeat
LRR_8 PF13855 151 - 210 6.6e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 768
AccB7I CCANNNNNTGG 1 cut(s) 437
AccIII TCCGGA 2 cut(s) 327, 861
AciI CCGC 1 cut(s) 882
AclWI GGATC 4 cut(s) 26, 859, 872, 1129
AcoI YGGCCR 1 cut(s) 428
AcsI RAATTY 2 cut(s) 473, 672
AcyI GRCGYC 2 cut(s) 765, 873
AfaI GTAC 3 cut(s) 166, 362, 737
AfiI CCNNNNNNNGG 2 cut(s) 437, 1144
AgsI TTSAA 5 cut(s) 58, 478, 656, 677, 685
AjnI CCWGG 2 cut(s) 146, 1137
AjuI GAANNNNNNNTTGG 2 cut(s) 487, 519
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
AluBI AGCT 9 cut(s) 176, 252, 525, 556, 680, 820, 829, 981, 1103
AluI AGCT 9 cut(s) 176, 252, 525, 556, 680, 820, 829, 981, 1103
Alw26I GTCTC 3 cut(s) 549, 593, 773
AlwI GGATC 4 cut(s) 26, 859, 872, 1129
Ama87I CYCGRG 1 cut(s) 244
Aor13HI TCCGGA 2 cut(s) 327, 861
AoxI GGCC 3 cut(s) 268, 428, 856
ApeKI GCWGC 3 cut(s) 120, 978, 1063
ApoI RAATTY 2 cut(s) 473, 672
ArsI GACNNNNNNTTYG 2 cut(s) 833, 865
Asp700I GAANNNNTTC 1 cut(s) 1148
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 3 cut(s) 268, 491, 662
AsuHPI GGTGA 3 cut(s) 26, 715, 851
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 2 cut(s) 491, 662
BalI TGGCCA 1 cut(s) 430
BamHI GGATCC 1 cut(s) 864
BbsI GAAGAC 2 cut(s) 841, 1095
BbvI GCAGC 3 cut(s) 132, 990, 1050
BccI CCATC 4 cut(s) 732, 830, 968, 1148
BceAI ACGGC 2 cut(s) 772, 920
BciT130I CCWGG 2 cut(s) 148, 1139
BcoDI GTCTC 3 cut(s) 549, 593, 773
BfaI CTAG 1 cut(s) 645
BfmI CTRYAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 379
BglII AGATCT 1 cut(s) 423
BisI GCNGC 3 cut(s) 121, 979, 1064
BlpI GCTNAGC 1 cut(s) 825
BlsI GCNGC 3 cut(s) 122, 980, 1065
Bme1390I CCNGG 2 cut(s) 148, 1139
Bme18I GGWCC 2 cut(s) 491, 662
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 3 cut(s) 268, 491, 662
BmiI GGNNCC 3 cut(s) 303, 443, 866
BmrFI CCNGG 2 cut(s) 148, 1139
BmrI ACTGGG 3 cut(s) 97, 243, 567
BmsI GCATC 1 cut(s) 1005
BmuI ACTGGG 3 cut(s) 97, 243, 567
BpiI GAAGAC 2 cut(s) 841, 1095
Bpu10I CCTNAGC 1 cut(s) 891
Bpu1102I GCTNAGC 1 cut(s) 825
BsaBI GATNNNNATC 1 cut(s) 1133
BsaHI GRCGYC 2 cut(s) 765, 873
BsaI GGTCTC 1 cut(s) 773
BsaJI CCNNGG 2 cut(s) 291, 1138
BsaWI WCCGGW 2 cut(s) 327, 861
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 1144
Bse1I ACTGG 4 cut(s) 103, 238, 262, 573
Bse3DI GCAATG 1 cut(s) 807
Bse8I GATNNNNATC 1 cut(s) 1133
BseAI TCCGGA 2 cut(s) 327, 861
BseBI CCWGG 2 cut(s) 148, 1139
BseDI CCNNGG 2 cut(s) 291, 1138
BseGI GGATG 1 cut(s) 1021
BseJI GATNNNNATC 1 cut(s) 1133
BseLI CCNNNNNNNGG 2 cut(s) 437, 1144
BseMI GCAATG 1 cut(s) 807
BseMII CTCAG 4 cut(s) 604, 981, 1113, 1118
BseNI ACTGG 4 cut(s) 103, 238, 262, 573
BseRI GAGGAG 1 cut(s) 704
BseXI GCAGC 3 cut(s) 132, 990, 1050
BseYI CCCAGC 1 cut(s) 981
BshFI GGCC 3 cut(s) 270, 430, 858
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 2 cut(s) 328, 862
BslI CCNNNNNNNGG 2 cut(s) 437, 1144
BsmAI GTCTC 3 cut(s) 549, 593, 773
BsmBI CGTCTC 1 cut(s) 593
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 3 cut(s) 270, 430, 858
Bso31I GGTCTC 1 cut(s) 773
BsoBI CYCGRG 1 cut(s) 244
Bsp13I TCCGGA 2 cut(s) 327, 861
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 5 cut(s) 31, 423, 744, 864, 1134
Bsp1720I GCTNAGC 1 cut(s) 825
BspACI CCGC 1 cut(s) 882
BspANI GGCC 3 cut(s) 270, 430, 858
BspCNI CTCAG 4 cut(s) 603, 982, 1114, 1117
BspEI TCCGGA 2 cut(s) 327, 861
BspLI GGNNCC 3 cut(s) 303, 443, 866
BspPI GGATC 4 cut(s) 26, 859, 872, 1129
BspTNI GGTCTC 1 cut(s) 773
BsrDI GCAATG 1 cut(s) 807
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 4 cut(s) 103, 238, 262, 573
BssECI CCNNGG 2 cut(s) 291, 1138
BssMI GATC 5 cut(s) 31, 423, 744, 864, 1134
BssNI GRCGYC 2 cut(s) 765, 873
Bst2UI CCWGG 2 cut(s) 148, 1139
Bst4CI ACNGT 4 cut(s) 80, 169, 735, 1033
Bst6I CTCTTC 4 cut(s) 206, 806, 1054, 1061
BstACI GRCGYC 2 cut(s) 765, 873
BstAUI TGTACA 1 cut(s) 735
BstC8I GCNNGC 3 cut(s) 27, 393, 822
BstDEI CTNAG 8 cut(s) 526, 590, 825, 891, 990, 1002, 1104, 1122
BstEII GGTNACC 1 cut(s) 703
BstENI CCTNNNNNAGG 1 cut(s) 1142
BstF5I GGATG 1 cut(s) 1021
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 5 cut(s) 34, 426, 747, 867, 1137
BstMAI GTCTC 3 cut(s) 549, 593, 773
BstMBI GATC 5 cut(s) 31, 423, 744, 864, 1134
BstMWI GCNNNNNNNGC 3 cut(s) 803, 826, 881
BstNI CCWGG 2 cut(s) 148, 1139
BstPI GGTNACC 1 cut(s) 703
BstSCI CCNGG 2 cut(s) 146, 1137
BstSFI CTRYAG 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 132, 990, 1050
BstV2I GAAGAC 2 cut(s) 841, 1095
BstX2I RGATCY 2 cut(s) 423, 864
BstYI RGATCY 2 cut(s) 423, 864
BsuRI GGCC 3 cut(s) 270, 430, 858
BtsCI GGATG 1 cut(s) 1021
BtsI GCAGTG 1 cut(s) 930
BtsIMutI CAGTG 4 cut(s) 110, 578, 616, 930
Cac8I GCNNGC 3 cut(s) 27, 393, 822
CfoI GCGC 1 cut(s) 378
Cfr13I GGNCC 3 cut(s) 268, 491, 662
CseI GACGC 2 cut(s) 397, 881
Csp6I GTAC 3 cut(s) 165, 361, 736
CviAII CATG 1 cut(s) 458
CviQI GTAC 3 cut(s) 165, 361, 736
DdeI CTNAG 8 cut(s) 526, 590, 825, 891, 990, 1002, 1104, 1122
DpnI GATC 5 cut(s) 33, 425, 746, 866, 1136
DpnII GATC 5 cut(s) 31, 423, 744, 864, 1134
DraI TTTAAA 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 428
Eam1104I CTCTTC 4 cut(s) 206, 806, 1054, 1061
EarI CTCTTC 4 cut(s) 206, 806, 1054, 1061
Eco31I GGTCTC 1 cut(s) 773
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 491, 662
Eco88I CYCGRG 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 703
EcoNI CCTNNNNNAGG 1 cut(s) 1142
EcoO109I RGGNCCY 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 703
EcoRII CCWGG 2 cut(s) 146, 1137
EcoRV GATATC 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 593
FaeI CATG 1 cut(s) 461
FaiI YATR 9 cut(s) 12, 143, 215, 459, 518, 549, 619, 834, 1072
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FatI CATG 1 cut(s) 457
Fnu4HI GCNGC 3 cut(s) 121, 979, 1064
FokI GGATG 1 cut(s) 1008
Fsp4HI GCNGC 3 cut(s) 121, 979, 1064
FspBI CTAG 1 cut(s) 645
GlaI GCGC 1 cut(s) 377
GluI GCNGC 3 cut(s) 121, 979, 1064
GsaI CCCAGC 1 cut(s) 985
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 3 cut(s) 270, 430, 858
HapII CCGG 2 cut(s) 328, 862
HgaI GACGC 2 cut(s) 397, 881
HhaI GCGC 1 cut(s) 378
Hin1I GRCGYC 2 cut(s) 765, 873
Hin1II CATG 1 cut(s) 461
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HindIII AAGCTT 3 cut(s) 250, 554, 678
HinfI GANTC 7 cut(s) 583, 640, 788, 954, 1108, 1158, 1166
HpaII CCGG 2 cut(s) 328, 862
HphI GGTGA 3 cut(s) 26, 715, 851
Hpy166II GTNNAC 2 cut(s) 419, 578
Hpy188I TCNGA 8 cut(s) 282, 292, 787, 991, 1107, 1113, 1123, 1163
Hpy8I GTNNAC 2 cut(s) 419, 578
Hpy99I CGWCG 4 cut(s) 391, 764, 767, 875
HpyAV CCTTC 8 cut(s) 50, 52, 155, 315, 464, 675, 679, 1138
HpyCH4III ACNGT 4 cut(s) 80, 169, 735, 1033
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 7 cut(s) 50, 74, 130, 341, 347, 358, 617
HpyF10VI GCNNNNNNNGC 3 cut(s) 803, 826, 881
HpyF3I CTNAG 8 cut(s) 526, 590, 825, 891, 990, 1002, 1104, 1122
HpySE526I ACGT 1 cut(s) 765
Hsp92I GRCGYC 2 cut(s) 765, 873
Hsp92II CATG 1 cut(s) 461
HspAI GCGC 1 cut(s) 376
Kpn2I TCCGGA 2 cut(s) 327, 861
Kzo9I GATC 5 cut(s) 31, 423, 744, 864, 1134
LmnI GCTCC 1 cut(s) 717
Lsp1109I GCAGC 3 cut(s) 132, 990, 1050
LweI GCATC 1 cut(s) 1005
MaeI CTAG 1 cut(s) 645
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 3 cut(s) 703, 839, 1037
MalI GATC 5 cut(s) 33, 425, 746, 866, 1136
MboI GATC 5 cut(s) 31, 423, 744, 864, 1134
MboII GAAGA 9 cut(s) 29, 193, 739, 793, 841, 1041, 1048, 1100, 1106
MflI RGATCY 2 cut(s) 423, 864
MlsI TGGCCA 1 cut(s) 430
MluNI TGGCCA 1 cut(s) 430
MlyI GAGTC 3 cut(s) 577, 1167, 1175
MmeI TCCRAC 2 cut(s) 1068, 1141
MnlI CCTC 8 cut(s) 281, 286, 523, 625, 725, 793, 869, 913
Mox20I TGGCCA 1 cut(s) 430
MroI TCCGGA 2 cut(s) 327, 861
MroXI GAANNNNTTC 1 cut(s) 1148
MscI TGGCCA 1 cut(s) 430
MseI TTAA 2 cut(s) 254, 470
Msp20I TGGCCA 1 cut(s) 430
MspA1I CMGCKG 1 cut(s) 981
MspI CCGG 2 cut(s) 328, 862
MspR9I CCNGG 2 cut(s) 148, 1139
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 2 cut(s) 148, 1139
MwoI GCNNNNNNNGC 3 cut(s) 803, 826, 881
NdeII GATC 5 cut(s) 31, 423, 744, 864, 1134
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 3 cut(s) 303, 443, 866
NmuCI GTSAC 3 cut(s) 703, 839, 1037
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PctI GAATGC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 1148
PfeI GAWTC 4 cut(s) 640, 788, 954, 1108
PflFI GACNNNGTC 2 cut(s) 764, 845
PflMI CCANNNNNTGG 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 146
PkrI GCNGC 3 cut(s) 122, 980, 1065
PleI GAGTC 3 cut(s) 577, 1166, 1174
PpsI GAGTC 3 cut(s) 577, 1166, 1174
Psp6I CCWGG 2 cut(s) 146, 1137
PspEI GGTNACC 1 cut(s) 703
PspFI CCCAGC 1 cut(s) 981
PspGI CCWGG 2 cut(s) 146, 1137
PspN4I GGNNCC 3 cut(s) 303, 443, 866
PspPI GGNCC 3 cut(s) 268, 491, 662
PsuI RGATCY 2 cut(s) 423, 864
PsyI GACNNNGTC 2 cut(s) 764, 845
PvuII CAGCTG 1 cut(s) 981
RsaI GTAC 3 cut(s) 166, 362, 737
RsaNI GTAC 3 cut(s) 165, 361, 736
SaqAI TTAA 2 cut(s) 254, 470
SatI GCNGC 3 cut(s) 121, 979, 1064
Sau3AI GATC 5 cut(s) 31, 423, 744, 864, 1134
Sau96I GGNCC 3 cut(s) 268, 491, 662
SchI GAGTC 3 cut(s) 577, 1167, 1175
ScrFI CCNGG 2 cut(s) 148, 1139
SfaNI GCATC 1 cut(s) 1005
SfcI CTRYAG 1 cut(s) 263
SinI GGWCC 2 cut(s) 491, 662
SsiI CCGC 1 cut(s) 882
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 2 cut(s) 146, 1137
TaaI ACNGT 4 cut(s) 80, 169, 735, 1033
TaiI ACGT 1 cut(s) 768
TaqI TCGA 2 cut(s) 777, 1152
TatI WGTACW 2 cut(s) 360, 735
TfiI GAWTC 4 cut(s) 640, 788, 954, 1108
Tru1I TTAA 2 cut(s) 254, 470
Tru9I TTAA 2 cut(s) 254, 470
TscAI CASTG 4 cut(s) 110, 585, 616, 930
TseFI GTSAC 3 cut(s) 703, 839, 1037
TseI GCWGC 3 cut(s) 120, 978, 1063
Tsp45I GTSAC 3 cut(s) 703, 839, 1037
TspDTI ATGAA 7 cut(s) 17, 32, 84, 308, 446, 946, 1113
TspRI CASTG 4 cut(s) 110, 585, 616, 930
Tth111I GACNNNGTC 2 cut(s) 764, 845
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 491, 662
XagI CCTNNNNNAGG 1 cut(s) 1142
XapI RAATTY 2 cut(s) 473, 672
XmnI GAANNNNTTC 1 cut(s) 1148
XspI CTAG 1 cut(s) 645
ZraI GACGTC 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.