Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Forward (+)

20251309 .. 20257451

Gene Structure 6143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGGTGCTGGGTCATATTTGGGCTAGCCCATACTCAGGGTCTGCGATCTGTTTGCTACCTTGGAATGTACTTGGGTTTGGGCTCACTTCATGGGCCCTACCCAAGCTGCCTCTTCTTCCTCCTCCTCTATTGCCTCTACATTTCCGTGCGTCGAATTCAAATCCTCAACCGCTCAACGCCACAAGACCCACGGCGGTGTGTGCGGATAGCGATGGTGGCCAAGGAGTTTACGGGAACATGGCGAAATGCAGAAATCTTGACTTCGTGAGAGAATTCGCATGGCCACCCAACCCCACCGGTTGGCTTGCTGCGCCGCCGTGGATCATGCCATTAAATCCCACCACAAAGCAGGAAAGATCAAAACCCTCCAATTATGTTTCGATCCGTCCGATGTTGAGTTTCTTCTTGAGAAGTGGGTTCGGAAATCGGTCAAGAAAGGAGTCGAGAGCTCGATCTCGACATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.33

Weight (kDa)

10.65

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccBSI	CCGCTC	1 cut(s)	175
AciI	CCGC	4 cut(s)	173, 197, 206, 317
AclWI	GGATC	2 cut(s)	332, 379
AcoI	YGGCCR	2 cut(s)	220, 284
AcsI	RAATTY	2 cut(s)	157, 275
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	38, 303
AgeI	ACCGGT	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	162
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	2 cut(s)	109, 452
AluI	AGCT	2 cut(s)	109, 452
Alw21I	GWGCWC	1 cut(s)	454
AlwI	GGATC	2 cut(s)	332, 379
AlwNI	CAGNNNCTG	2 cut(s)	10, 44
AoxI	GGCC	3 cut(s)	96, 220, 284
ApaI	GGGCCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	109, 311
ApoI	RAATTY	2 cut(s)	157, 275
AsiGI	ACCGGT	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	96, 97
AsuNHI	GCTAGC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	100
BalI	TGGCCA	2 cut(s)	222, 286
BanII	GRGCYC	3 cut(s)	87, 100, 454
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	2 cut(s)	96, 298
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	2 cut(s)	210, 304
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	3 cut(s)	110, 312, 317
BlsI	GCNGC	3 cut(s)	111, 313, 318
BmgT120I	GGNCC	2 cut(s)	96, 97
BmiI	GGNNCC	1 cut(s)	98
BmtI	GCTAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	430
BsaJI	CCNNGG	4 cut(s)	62, 192, 223, 320
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 303
Bse118I	RCCGGY	1 cut(s)	299
BseDI	CCNNGG	4 cut(s)	62, 192, 223, 320
BseLI	CCNNNNNNNGG	2 cut(s)	38, 303
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	2 cut(s)	114, 117
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	96, 298
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	3 cut(s)	98, 222, 286
BshTI	ACCGGT	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	38, 303
BsnI	GGCC	3 cut(s)	98, 222, 286
Bsp120I	GGGCCC	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	87, 100, 454
Bsp143I	GATC	5 cut(s)	48, 324, 359, 384, 455
BspACI	CCGC	4 cut(s)	173, 197, 206, 317
BspANI	GGCC	3 cut(s)	98, 222, 286
BspCNI	CTCAG	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	98
BspOI	GCTAGC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	332, 379
BsrBI	CCGCTC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	4 cut(s)	62, 192, 223, 320
BssMI	GATC	5 cut(s)	48, 324, 359, 384, 455
BssT1I	CCWWGG	2 cut(s)	62, 223
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	28, 309
BstDEI	CTNAG	1 cut(s)	37
BstDSI	CCRYGG	2 cut(s)	192, 320
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	5 cut(s)	51, 327, 362, 387, 458
BstMBI	GATC	5 cut(s)	48, 324, 359, 384, 455
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 219, 313
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	96, 298
BsuRI	GGCC	3 cut(s)	98, 222, 286
BtgI	CCRYGG	2 cut(s)	192, 320
BtgZI	GCGATG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	28, 309
CaiI	CAGNNNCTG	2 cut(s)	10, 44
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	96, 97
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	71
CspAI	ACCGGT	1 cut(s)	299
CviAII	CATG	4 cut(s)	93, 241, 282, 328
CviJI	RGCY	9 cut(s)	26, 30, 85, 98, 109, 222, 286, 307, 452
CviKI_1	RGCY	9 cut(s)	26, 30, 85, 98, 109, 222, 286, 307, 452
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	5 cut(s)	50, 326, 361, 386, 457
DpnII	GATC	5 cut(s)	48, 324, 359, 384, 455
EaeI	YGGCCR	2 cut(s)	220, 284
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	452
Eco130I	CCWWGG	2 cut(s)	62, 223
Eco24I	GRGCYC	3 cut(s)	87, 100, 454
Eco53kI	GAGCTC	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRI	GAATTC	2 cut(s)	157, 275
EcoT14I	CCWWGG	2 cut(s)	62, 223
EcoT38I	GRGCYC	3 cut(s)	87, 100, 454
ErhI	CCWWGG	2 cut(s)	62, 223
FaeI	CATG	4 cut(s)	96, 244, 285, 331
FaiI	YATR	7 cut(s)	18, 34, 94, 242, 283, 329, 378
FatI	CATG	4 cut(s)	92, 240, 281, 327
Fnu4HI	GCNGC	3 cut(s)	110, 312, 317
FriOI	GRGCYC	3 cut(s)	87, 100, 454
Fsp4HI	GCNGC	3 cut(s)	110, 312, 317
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	3 cut(s)	110, 312, 317
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	98, 222, 286
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	4 cut(s)	96, 244, 285, 331
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	1 cut(s)	300
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	393, 425
Hpy188III	TCNNGA	6 cut(s)	260, 268, 409, 435, 447, 459
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	4, 252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 219, 313
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	4 cut(s)	96, 244, 285, 331
HspAI	GCGC	1 cut(s)	314
Kzo9I	GATC	5 cut(s)	48, 324, 359, 384, 455
LpnPI	CCDG	3 cut(s)	24, 313, 338
Lsp1109I	GCAGC	2 cut(s)	96, 298
MaeI	CTAG	1 cut(s)	27
MalI	GATC	5 cut(s)	50, 326, 361, 386, 457
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	5 cut(s)	48, 324, 359, 384, 455
MboII	GAAGA	3 cut(s)	107, 110, 397
MhlI	GDGCHC	3 cut(s)	87, 100, 454
MlsI	TGGCCA	2 cut(s)	222, 286
MluCI	AATT	3 cut(s)	157, 275, 373
MluNI	TGGCCA	2 cut(s)	222, 286
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	7 cut(s)	123, 132, 135, 138, 147, 177, 379
Mox20I	TGGCCA	2 cut(s)	222, 286
MscI	TGGCCA	2 cut(s)	222, 286
MseI	TTAA	2 cut(s)	335, 469
MslI	CAYNNNNRTG	2 cut(s)	147, 197
Msp20I	TGGCCA	2 cut(s)	222, 286
MspI	CCGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	203, 219, 313
NdeII	GATC	5 cut(s)	48, 324, 359, 384, 455
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	4 cut(s)	96, 244, 285, 331
NlaIV	GGNNCC	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PflMI	CCANNNNNTGG	1 cut(s)	303
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	111, 313, 318
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	98
PspOMI	GGGCCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	96, 97
PstNI	CAGNNNCTG	2 cut(s)	10, 44
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	2 cut(s)	147, 197
SacI	GAGCTC	1 cut(s)	454
SaqAI	TTAA	2 cut(s)	335, 469
SatI	GCNGC	3 cut(s)	110, 312, 317
Sau3AI	GATC	5 cut(s)	48, 324, 359, 384, 455
Sau96I	GGNCC	2 cut(s)	96, 97
SchI	GAGTC	1 cut(s)	452
SduI	GDGCHC	3 cut(s)	87, 100, 454
SetI	ASST	4 cut(s)	9, 64, 111, 454
SmiMI	CAYNNNNRTG	2 cut(s)	147, 197
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	3 cut(s)	157, 275, 373
SsiI	CCGC	4 cut(s)	173, 197, 206, 317
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	454
StyI	CCWWGG	2 cut(s)	62, 223
TaqI	TCGA	5 cut(s)	155, 383, 446, 454, 460
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	3 cut(s)	157, 275, 373
TatI	WGTACW	1 cut(s)	70
TauI	GCSGC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	335, 469
Tru9I	TTAA	2 cut(s)	335, 469
TseI	GCWGC	2 cut(s)	109, 311
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	2 cut(s)	137, 377
Van91I	CCANNNNNTGG	1 cut(s)	303
XapI	RAATTY	2 cut(s)	157, 275
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.