Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003373.1

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Reverse (-)

25674 .. 27701

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003373.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 610 bp

atcagccactgggcaaatcgcagtctccatctgccagtccaacccccaattttctaggttcgaaatcatctgcgggttggtgatttacagactgtacaagttgatcttctccgacggtgacgacgtcttgggtgtcgagacctctgattctactgctctattcgccatcgctgataggctcgctaagctctatgatggcgacaaggtctctgttggcctccagatcccccacgctgatatcgcttcccctaagcaaatcgatttggttctcaaaggggaggcagtggtgatagccgtcaagaacttgtcaggattcatctccgtcaagcccgatggcagctgggtttctgagagcatcactaagcataaagcagaccagcatcctgatactgtcaaccaagaccaagacaaagatgaagatgaagctcagattcagactaaatctgagatgattgcgatcctggggaagggtttcgatggagtcggagagtctttcttcgcttccagagtggaacttcaccaagattttgaggaacttcacaggaacgctcatctggagatgattaaactctcgaagaagtttgcagcattgaagaggaagtatcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NERD

Protein Analysis

202

Amino Acids

22.3

Weight (kDa)

5.36

Isoelectric Point (pI)

22.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	127
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	2 cut(s)	218, 452
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	593
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	3 cut(s)	188, 340, 426
AluI	AGCT	3 cut(s)	188, 340, 426
Alw26I	GTCTC	3 cut(s)	29, 132, 212
AlwI	GGATC	2 cut(s)	218, 452
AlwNI	CAGNNNCTG	1 cut(s)	9
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	2 cut(s)	337, 585
Asp700I	GAANNNNTTC	1 cut(s)	471
AsuHPI	GGTGA	4 cut(s)	92, 129, 299, 510
AsuII	TTCGAA	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	349, 597
BccI	CCATC	5 cut(s)	36, 174, 189, 327, 471
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	462
BcoDI	GTCTC	3 cut(s)	29, 132, 212
BfaI	CTAG	1 cut(s)	55
BisI	GCNGC	2 cut(s)	338, 586
BlpI	GCTNAGC	1 cut(s)	184
BlsI	GCNGC	2 cut(s)	339, 587
Bme1390I	CCNGG	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	364, 389
BmuI	ACTGGG	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	204, 576
Bpu10I	CCTNAGC	1 cut(s)	250
Bpu1102I	GCTNAGC	1 cut(s)	184
Bpu14I	TTCGAA	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	124
BsaI	GGTCTC	2 cut(s)	132, 212
BsaJI	CCNNGG	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	2 cut(s)	14, 35
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	380
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	3 cut(s)	340, 436, 441
BseNI	ACTGG	2 cut(s)	14, 35
BseXI	GCAGC	2 cut(s)	349, 597
BseYI	CCCAGC	1 cut(s)	340
BshFI	GGCC	1 cut(s)	217
BshVI	ATCGAT	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	3 cut(s)	29, 132, 212
BsnI	GGCC	1 cut(s)	217
Bso31I	GGTCTC	2 cut(s)	132, 212
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	103, 223, 457
Bsp1720I	GCTNAGC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	3 cut(s)	341, 437, 440
BspDI	ATCGAT	1 cut(s)	259
BspPI	GGATC	2 cut(s)	218, 452
BspT104I	TTCGAA	1 cut(s)	61
BspTNI	GGTCTC	2 cut(s)	132, 212
BsrGI	TGTACA	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	14, 35
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	3 cut(s)	103, 223, 457
BssNI	GRCGYC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	3 cut(s)	94, 117, 392
Bst6I	CTCTTC	1 cut(s)	588
BstACI	GRCGYC	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	6 cut(s)	184, 250, 349, 361, 427, 445
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	380
BstKTI	GATC	3 cut(s)	106, 226, 460
BstMAI	GTCTC	3 cut(s)	29, 132, 212
BstMBI	GATC	3 cut(s)	103, 223, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 185, 240
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstV1I	GCAGC	2 cut(s)	349, 597
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	217
BsuTUI	ATCGAT	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	7, 289
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	95
CviJI	RGCY	8 cut(s)	6, 179, 188, 217, 294, 329, 340, 426
CviKI_1	RGCY	8 cut(s)	6, 179, 188, 217, 294, 329, 340, 426
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	6 cut(s)	184, 250, 349, 361, 427, 445
DpnI	GATC	3 cut(s)	105, 225, 459
DpnII	GATC	3 cut(s)	103, 223, 457
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco31I	GGTCTC	2 cut(s)	132, 212
Eco32I	GATATC	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	460
EcoRV	GATATC	1 cut(s)	239
FaiI	YATR	2 cut(s)	193, 367
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	338, 586
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	2 cut(s)	338, 586
FspBI	CTAG	1 cut(s)	55
GluI	GCNGC	2 cut(s)	338, 586
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	2 cut(s)	204, 576
HaeIII	GGCC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	395
HindII	GTYRAC	1 cut(s)	395
HinfI	GANTC	5 cut(s)	147, 313, 431, 481, 489
HphI	GGTGA	4 cut(s)	92, 129, 299, 510
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	7 cut(s)	113, 146, 350, 430, 436, 446, 486
Hpy188III	TCNNGA	8 cut(s)	137, 221, 299, 310, 384, 505, 555, 572
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	2 cut(s)	117, 126
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	3 cut(s)	94, 117, 392
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 185, 240
HpyF3I	CTNAG	6 cut(s)	184, 250, 349, 361, 427, 445
HpySE526I	ACGT	1 cut(s)	124
Hsp92I	GRCGYC	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	103, 223, 457
Lsp1109I	GCAGC	2 cut(s)	349, 597
LweI	GCATC	2 cut(s)	364, 389
MaeI	CTAG	1 cut(s)	55
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	3 cut(s)	105, 225, 459
MboI	GATC	3 cut(s)	103, 223, 457
MboII	GAAGA	5 cut(s)	98, 429, 488, 587, 605
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	490, 498
MmeI	TCCRAC	3 cut(s)	64, 136, 464
MnlI	CCTC	5 cut(s)	152, 228, 272, 524, 589
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	1 cut(s)	565
MspA1I	CMGCKG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	162, 185, 240
NdeII	GATC	3 cut(s)	103, 223, 457
NmuCI	GTSAC	1 cut(s)	117
NspV	TTCGAA	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	147, 313, 431
PflFI	GACNNNGTC	2 cut(s)	123, 204
PkrI	GCNGC	2 cut(s)	339, 587
PleI	GAGTC	2 cut(s)	489, 497
PpsI	GAGTC	2 cut(s)	489, 497
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	2 cut(s)	123, 204
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	565
SatI	GCNGC	2 cut(s)	338, 586
Sau3AI	GATC	3 cut(s)	103, 223, 457
SchI	GAGTC	2 cut(s)	490, 498
ScrFI	CCNGG	1 cut(s)	462
SetI	ASST	7 cut(s)	60, 127, 144, 190, 208, 342, 428
SfaNI	GCATC	2 cut(s)	364, 389
SfuI	TTCGAA	1 cut(s)	61
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	3 cut(s)	94, 117, 392
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	5 cut(s)	61, 136, 259, 475, 573
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	3 cut(s)	147, 313, 431
Tru1I	TTAA	1 cut(s)	565
Tru9I	TTAA	1 cut(s)	565
TscAI	CASTG	2 cut(s)	14, 289
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	2 cut(s)	337, 585
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	305, 430, 436
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	14, 289
Tth111I	GACNNNGTC	2 cut(s)	123, 204
XagI	CCTNNNNNAGG	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	55
ZraI	GACGTC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.