Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Reverse (-)

60119660 .. 60132702

Gene Structure 13043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTCTGATAGGTGCACTAGGGTTGTAGAAGTGGATCCAAGTGACGCAGTCGAAGGAAAAATATTTGAGCTTTGTATCAGAAAAAGAAAAGAACAGAAGAAAGGGAAAAACAAACCAAGAGATGTTGGCAGAGAACAAGAACGGAAGGAAGAAACAAAAGATAAGGACAAAGAAGAAAAGATTTTTGGGGAGAAGACAAAACCTGAAAGGGAGAGAAACATTTCAGTTCTGGGGCAGGACTCAATAAATGAGCCCAAACCCAAGCTCGAACCTAAGGAGCAAGGAGGCTTGCTCAAGCCCACTCGGCAAGCCAAACCCGGATCTTGCAAGGCCAACCCCAACTGGTTCGAAATCATTTGTGGGTTGGTGATTTACGGACTATACAAGTTGATCTTCTCGGACGGCAACGACTTCTTGGGTGTCGAGACCTCCGATTCTCTTGCTCTCTTCACCATCGCCGACGGGCTCGCTAAGCTCTATGATGGGGACAAGGTCTTCGTTGGCCTCCGGATCCCCGACGCCGATACCGCTTCCCTAAGCAAATCGATTTGGTTCTCAAAGGACGAAGACAAAGATGAAGCTCGGATTCGGACCAAATCCGAGATGATTGCGATCTGGGGAAGGGTTTCGATGGAGTCGGAGAGTCTTTCTTCGCTTCCGAAGCGGAACTTCACCACGATTTTGAGGAACTTCACGGGAATGCTCATCTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NERD

Protein Analysis

238

Amino Acids

27.09

Weight (kDa)

8.74

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	507
AciI	CCGC	2 cut(s)	528, 664
AclWI	GGATC	5 cut(s)	29, 42, 328, 505, 518
AcyI	GRCGYC	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	4 cut(s)	70, 265, 475, 581
AluI	AGCT	4 cut(s)	70, 265, 475, 581
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	419
Alw44I	GTGCAC	1 cut(s)	13
AlwI	GGATC	5 cut(s)	29, 42, 328, 505, 518
Aor13HI	TCCGGA	1 cut(s)	507
AoxI	GGCC	2 cut(s)	330, 502
ApaLI	GTGCAC	1 cut(s)	13
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	2 cut(s)	220, 625
AspS9I	GGNCC	1 cut(s)	591
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	379, 442, 664
AsuII	TTCGAA	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	591
AxyI	CCTNAGG	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	17
BamHI	GGATCC	2 cut(s)	34, 510
BanII	GRGCYC	2 cut(s)	255, 468
BbsI	GAAGAC	3 cut(s)	200, 487, 573
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	3 cut(s)	461, 476, 625
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	4 cut(s)	422, 456, 590, 624
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	18
BglI	GCCNNNNNGGC	1 cut(s)	304
BlpI	GCTNAGC	1 cut(s)	471
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	591
BmiI	GGNNCC	2 cut(s)	36, 512
BmrFI	CCNGG	1 cut(s)	318
BpiI	GAAGAC	3 cut(s)	200, 487, 573
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
Bpu10I	CCTNAGC	1 cut(s)	536
Bpu1102I	GCTNAGC	1 cut(s)	471
Bpu14I	TTCGAA	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	318
Bsa29I	ATCGAT	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	611
BsaHI	GRCGYC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	507
Bse1I	ACTGG	1 cut(s)	347
Bse21I	CCTNAGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	611
BseAI	TCCGGA	1 cut(s)	507
BseCI	ATCGAT	1 cut(s)	545
BseJI	GATNNNNATC	1 cut(s)	611
BseNI	ACTGG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	332, 504
BshVI	ATCGAT	1 cut(s)	545
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	318, 508
BslFI	GGGAC	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	705
BsnI	GGCC	2 cut(s)	332, 504
Bso31I	GGTCTC	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	348
Bsp1286I	GDGCHC	3 cut(s)	17, 255, 468
Bsp13I	TCCGGA	1 cut(s)	507
Bsp143I	GATC	5 cut(s)	34, 320, 390, 510, 612
Bsp1720I	GCTNAGC	1 cut(s)	471
BspACI	CCGC	2 cut(s)	528, 664
BspANI	GGCC	2 cut(s)	332, 504
BspDI	ATCGAT	1 cut(s)	545
BspEI	TCCGGA	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	36, 512
BspPI	GGATC	5 cut(s)	29, 42, 328, 505, 518
BspT104I	TTCGAA	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	347
BssMI	GATC	5 cut(s)	34, 320, 390, 510, 612
BssNI	GRCGYC	1 cut(s)	519
Bst6I	CTCTTC	1 cut(s)	452
BstACI	GRCGYC	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	348
BstC8I	GCNNGC	3 cut(s)	290, 309, 468
BstDEI	CTNAG	3 cut(s)	273, 471, 536
BstKTI	GATC	5 cut(s)	37, 323, 393, 513, 615
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	5 cut(s)	34, 320, 390, 510, 612
BstMWI	GCNNNNNNNGC	4 cut(s)	304, 472, 527, 661
BstSCI	CCNGG	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	17
BstV2I	GAAGAC	3 cut(s)	200, 487, 573
BstX2I	RGATCY	3 cut(s)	34, 320, 510
BstYI	RGATCY	3 cut(s)	34, 320, 510
Bsu15I	ATCGAT	1 cut(s)	545
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	332, 504
BsuTUI	ATCGAT	1 cut(s)	545
BtgZI	GCGATG	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	290, 309, 468
Cfr13I	GGNCC	1 cut(s)	591
ClaI	ATCGAT	1 cut(s)	545
CseI	GACGC	2 cut(s)	53, 527
DdeI	CTNAG	3 cut(s)	273, 471, 536
DpnI	GATC	5 cut(s)	36, 322, 392, 512, 614
DpnII	GATC	5 cut(s)	34, 320, 390, 510, 612
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco24I	GRGCYC	2 cut(s)	255, 468
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	591
Eco81I	CCTNAGG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	255, 468
FaiI	YATR	2 cut(s)	382, 480
FalI	AAGNNNNNCTT	4 cut(s)	377, 409, 653, 685
FaqI	GGGAC	1 cut(s)	500
FriOI	GRGCYC	2 cut(s)	255, 468
FspBI	CTAG	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	332, 504
HapII	CCGG	2 cut(s)	318, 508
HgaI	GACGC	2 cut(s)	53, 527
Hin1I	GRCGYC	1 cut(s)	519
HinfI	GANTC	5 cut(s)	239, 434, 586, 635, 643
HpaII	CCGG	2 cut(s)	318, 508
HphI	GGTGA	3 cut(s)	379, 442, 664
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	9 cut(s)	7, 80, 400, 433, 585, 591, 601, 640, 660
Hpy188III	TCNNGA	3 cut(s)	424, 508, 709
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	2 cut(s)	464, 521
HpyAV	CCTTC	3 cut(s)	47, 139, 615
HpyCH4V	TGCA	2 cut(s)	15, 327
HpyF10VI	GCNNNNNNNGC	4 cut(s)	304, 472, 527, 661
HpyF3I	CTNAG	3 cut(s)	273, 471, 536
Hsp92I	GRCGYC	1 cut(s)	519
Kpn2I	TCCGGA	1 cut(s)	507
Kzo9I	GATC	5 cut(s)	34, 320, 390, 510, 612
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	8 cut(s)	215, 216, 221, 328, 331, 521, 601, 694
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	5 cut(s)	36, 322, 392, 512, 614
MboI	GATC	5 cut(s)	34, 320, 390, 510, 612
MboII	GAAGA	9 cut(s)	109, 161, 185, 205, 385, 439, 487, 578, 642
MflI	RGATCY	3 cut(s)	34, 320, 510
MhlI	GDGCHC	3 cut(s)	17, 255, 468
MlyI	GAGTC	3 cut(s)	233, 644, 652
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	4 cut(s)	278, 439, 515, 678
MroI	TCCGGA	1 cut(s)	507
MroXI	GAANNNNTTC	2 cut(s)	220, 625
MslI	CAYNNNNRTG	1 cut(s)	698
MspI	CCGG	2 cut(s)	318, 508
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	705
MwoI	GCNNNNNNNGC	4 cut(s)	304, 472, 527, 661
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	5 cut(s)	34, 320, 390, 510, 612
NlaIV	GGNNCC	2 cut(s)	36, 512
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	41
NspV	TTCGAA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	705
PdmI	GAANNNNTTC	2 cut(s)	220, 625
PfeI	GAWTC	2 cut(s)	434, 586
PflFI	GACNNNGTC	2 cut(s)	47, 491
PleI	GAGTC	3 cut(s)	233, 643, 651
PpsI	GAGTC	3 cut(s)	233, 643, 651
PspN4I	GGNNCC	2 cut(s)	36, 512
PspPI	GGNCC	1 cut(s)	591
PsuI	RGATCY	3 cut(s)	34, 320, 510
PsyI	GACNNNGTC	2 cut(s)	47, 491
RseI	CAYNNNNRTG	1 cut(s)	698
Sau3AI	GATC	5 cut(s)	34, 320, 390, 510, 612
Sau96I	GGNCC	1 cut(s)	591
SchI	GAGTC	3 cut(s)	233, 644, 652
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	3 cut(s)	17, 255, 468
SetI	ASST	9 cut(s)	14, 72, 205, 267, 274, 431, 477, 495, 583
SfuI	TTCGAA	1 cut(s)	348
SinI	GGWCC	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SsiI	CCGC	2 cut(s)	528, 664
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	316
TaqI	TCGA	6 cut(s)	51, 267, 348, 423, 545, 629
TfiI	GAWTC	2 cut(s)	434, 586
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	591
TspGWI	ACGGA	2 cut(s)	157, 390
Tth111I	GACNNNGTC	2 cut(s)	47, 491
VneI	GTGCAC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	591
XmnI	GAANNNNTTC	2 cut(s)	220, 625
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.