Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006005.1

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Reverse (-)

4961 .. 7601

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006005.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgtggttcgagatcctctgcggcctggtgatttacagactgtacaagttcctcttctccgacggcgacgacgtcttggatgtcgagacctctgattctaccgctctcttcgccgtcgccgacaggctcgctaagctctacgatggcgccaaggtctgcaacatgtggttcgagatcatctgcggcctggtgatttacagactgtacaagttgttcttctccgacggcgacgacgtcttggatgtcgagacctctgattctaccgctctcttcgccgtcgccgacaggctcgctaagctctacgatggcgccaaggtctacgttggcctccgggtccccgacgccgataccgcttcccctcagcacatcgatttggttctcctcaacaaaggggaggccgtggtgatagccgtgaagaacttgtcaggattcatctccgtcaagcccgatggcagctgggtttctgagagcctcactaaacacaaaatagagcagcatcctgatcctctggcggagacaaaaagacaagcttcaattcttgagtcctatcttgaacaaagaggagctgctttaccagaaggatatttgtcttgcaaagtaatactttccaatccaaaagtatgtaccattcagtcaagcagtttcccaccagaaatcattacttatgaccagtgggtacaaatgaaaccagaaccaaaaagtatgttttctggttggatgaagggcgcattccgtggtggaaagaaagagatgcaagaatctattcatcagaagcttaatttcattcttagtacagcaccaatgtgggatagattggagcttaaaggtaacaagtatgttcttggggaatttctggaattcaagggtaagcaggaagatgttcaggctttgaggcatattaaaagatcaaaaattagccgccttgttgtccaaaagacaagcatgcttggatttgccccttcaaggctccaagttctgtatactcgtcgtgattaccgaagtgaaggagcttcagcttctgagtggaaagaagtaaatgtaaggtcaagcacggaggttgtctttcagcttgacaattcttcaagagtccgcaagtttaagctctcctcaatttgttctatgtctctgagtgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NERD

Protein Analysis

378

Amino Acids

42.64

Weight (kDa)

8.07

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	75, 237
AccB1I	GGYRCC	2 cut(s)	146, 308
AccBSI	CCGCTC	2 cut(s)	104, 266
AccI	GTMKAC	2 cut(s)	318, 980
AciI	CCGC	8 cut(s)	21, 102, 183, 264, 351, 512, 919, 1090
AclWI	GGATC	2 cut(s)	7, 497
AcsI	RAATTY	2 cut(s)	848, 857
AcuI	CTGAAG	1 cut(s)	996
AcyI	GRCGYC	5 cut(s)	72, 147, 234, 309, 342
AfaI	GTAC	5 cut(s)	44, 206, 625, 678, 793
AfiI	CCNNNNNNNGG	1 cut(s)	963
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	5 cut(s)	534, 554, 862, 963, 1083
AjnI	CCWGG	2 cut(s)	24, 186
AleI	CACNNNNGTG	1 cut(s)	802
Alw26I	GTCTC	4 cut(s)	80, 242, 509, 1128
AlwI	GGATC	2 cut(s)	7, 497
AlwNI	CAGNNNCTG	1 cut(s)	1019
AoxI	GGCC	4 cut(s)	22, 184, 325, 396
ApeKI	GCWGC	3 cut(s)	453, 493, 566
ApoI	RAATTY	2 cut(s)	848, 857
Asp700I	GAANNNNTTC	2 cut(s)	762, 879
AspLEI	GCGC	3 cut(s)	149, 311, 728
AspS9I	GGNCC	1 cut(s)	334
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	40, 202, 415
AvaII	GGWCC	1 cut(s)	334
BanI	GGYRCC	2 cut(s)	146, 308
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	465, 505, 553
BccI	CCATC	3 cut(s)	137, 299, 443
BceAI	ACGGC	6 cut(s)	79, 98, 241, 260, 383, 395
BciT130I	CCWGG	2 cut(s)	26, 188
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	4 cut(s)	80, 242, 509, 1128
BfoI	RGCGCY	2 cut(s)	150, 312
BisI	GCNGC	6 cut(s)	22, 184, 454, 494, 567, 919
BlpI	GCTNAGC	2 cut(s)	132, 294
BlsI	GCNGC	6 cut(s)	23, 185, 455, 495, 568, 920
Bme1390I	CCNGG	3 cut(s)	26, 188, 332
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	5 cut(s)	148, 310, 335, 336, 968
BmrFI	CCNGG	3 cut(s)	26, 188, 332
BmsI	GCATC	2 cut(s)	505, 741
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu1102I	GCTNAGC	2 cut(s)	132, 294
BpuEI	CTTGAG	1 cut(s)	560
BpuMI	CCSGG	1 cut(s)	332
Bsa29I	ATCGAT	1 cut(s)	369
BsaHI	GRCGYC	5 cut(s)	72, 147, 234, 309, 342
BsaI	GGTCTC	2 cut(s)	80, 242
BsaJI	CCNNGG	4 cut(s)	150, 312, 399, 733
Bsc4I	CCNNNNNNNGG	1 cut(s)	963
Bse1I	ACTGG	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	26, 188
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	4 cut(s)	150, 312, 399, 733
BseGI	GGATG	4 cut(s)	85, 247, 496, 723
BseLI	CCNNNNNNNGG	1 cut(s)	963
BseMII	CTCAG	4 cut(s)	374, 456, 1011, 1118
BseNI	ACTGG	1 cut(s)	670
BseRI	GAGGAG	3 cut(s)	371, 576, 1096
BseXI	GCAGC	3 cut(s)	465, 505, 553
BseYI	CCCAGC	1 cut(s)	456
BshFI	GGCC	4 cut(s)	24, 186, 327, 398
BshNI	GGYRCC	2 cut(s)	146, 308
BshVI	ATCGAT	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	963
BsmAI	GTCTC	4 cut(s)	80, 242, 509, 1128
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	728
BsnI	GGCC	4 cut(s)	24, 186, 327, 398
Bso31I	GGTCTC	2 cut(s)	80, 242
Bsp1407I	TGTACA	2 cut(s)	42, 204
Bsp143I	GATC	4 cut(s)	12, 174, 502, 905
Bsp1720I	GCTNAGC	2 cut(s)	132, 294
BspACI	CCGC	8 cut(s)	21, 102, 183, 264, 351, 512, 919, 1090
BspANI	GGCC	4 cut(s)	24, 186, 327, 398
BspCNI	CTCAG	4 cut(s)	373, 457, 1012, 1119
BspDI	ATCGAT	1 cut(s)	369
BspLI	GGNNCC	5 cut(s)	148, 310, 335, 336, 968
BspPI	GGATC	2 cut(s)	7, 497
BspT107I	GGYRCC	2 cut(s)	146, 308
BspTNI	GGTCTC	2 cut(s)	80, 242
BsrBI	CCGCTC	2 cut(s)	104, 266
BsrGI	TGTACA	2 cut(s)	42, 204
BsrI	ACTGG	1 cut(s)	670
BssECI	CCNNGG	4 cut(s)	150, 312, 399, 733
BssMI	GATC	4 cut(s)	12, 174, 502, 905
BssNAI	GTATAC	1 cut(s)	981
BssNI	GRCGYC	5 cut(s)	72, 147, 234, 309, 342
BssT1I	CCWWGG	2 cut(s)	150, 312
Bst1107I	GTATAC	1 cut(s)	981
Bst2UI	CCWGG	2 cut(s)	26, 188
Bst4CI	ACNGT	2 cut(s)	42, 204
Bst6I	CTCTTC	3 cut(s)	59, 113, 275
BstACI	GRCGYC	5 cut(s)	72, 147, 234, 309, 342
BstAUI	TGTACA	2 cut(s)	42, 204
BstC8I	GCNNGC	3 cut(s)	129, 291, 944
BstDEI	CTNAG	7 cut(s)	132, 294, 360, 465, 788, 1020, 1127
BstDSI	CCRYGG	2 cut(s)	399, 733
BstF5I	GGATG	4 cut(s)	85, 247, 496, 723
BstH2I	RGCGCY	2 cut(s)	150, 312
BstHHI	GCGC	3 cut(s)	149, 311, 728
BstKTI	GATC	4 cut(s)	15, 177, 505, 908
BstMAI	GTCTC	4 cut(s)	80, 242, 509, 1128
BstMBI	GATC	4 cut(s)	12, 174, 502, 905
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 133, 272, 295, 350
BstNI	CCWGG	2 cut(s)	26, 188
BstNSI	RCATGY	2 cut(s)	166, 946
BstSCI	CCNGG	3 cut(s)	24, 186, 330
BstV1I	GCAGC	3 cut(s)	465, 505, 553
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BstZ17I	GTATAC	1 cut(s)	981
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	4 cut(s)	24, 186, 327, 398
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	2 cut(s)	399, 733
BtsCI	GGATG	4 cut(s)	85, 247, 496, 723
BtsIMutI	CAGTG	1 cut(s)	677
Cac8I	GCNNGC	3 cut(s)	129, 291, 944
CaiI	CAGNNNCTG	1 cut(s)	1019
CfoI	GCGC	3 cut(s)	149, 311, 728
Cfr13I	GGNCC	1 cut(s)	334
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	5 cut(s)	43, 205, 624, 677, 792
CviAII	CATG	2 cut(s)	163, 943
CviQI	GTAC	5 cut(s)	43, 205, 624, 677, 792
DdeI	CTNAG	7 cut(s)	132, 294, 360, 465, 788, 1020, 1127
DinI	GGCGCC	2 cut(s)	148, 310
DpnI	GATC	4 cut(s)	14, 176, 504, 907
DpnII	GATC	4 cut(s)	12, 174, 502, 905
Eam1104I	CTCTTC	3 cut(s)	59, 113, 275
EarI	CTCTTC	3 cut(s)	59, 113, 275
EciI	GGCGGA	1 cut(s)	527
Eco130I	CCWWGG	2 cut(s)	150, 312
Eco31I	GGTCTC	2 cut(s)	80, 242
Eco47I	GGWCC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	996
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	857
EcoRII	CCWGG	2 cut(s)	24, 186
EcoT14I	CCWWGG	2 cut(s)	150, 312
EgeI	GGCGCC	2 cut(s)	148, 310
EheI	GGCGCC	2 cut(s)	148, 310
ErhI	CCWWGG	2 cut(s)	150, 312
FaeI	CATG	2 cut(s)	166, 946
FaiI	YATR	9 cut(s)	164, 622, 666, 704, 837, 897, 944, 981, 1121
FalI	AAGNNNNNCTT	8 cut(s)	38, 70, 200, 232, 514, 546, 588, 620
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	162, 942
FblI	GTMKAC	2 cut(s)	318, 980
Fnu4HI	GCNGC	6 cut(s)	22, 184, 454, 494, 567, 919
FokI	GGATG	4 cut(s)	92, 254, 483, 730
Fsp4HI	GCNGC	6 cut(s)	22, 184, 454, 494, 567, 919
GlaI	GCGC	3 cut(s)	148, 310, 727
GluI	GCNGC	6 cut(s)	22, 184, 454, 494, 567, 919
GsaI	CCCAGC	1 cut(s)	460
HaeII	RGCGCY	2 cut(s)	150, 312
HaeIII	GGCC	4 cut(s)	24, 186, 327, 398
HapII	CCGG	1 cut(s)	331
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	3 cut(s)	149, 311, 728
Hin1I	GRCGYC	5 cut(s)	72, 147, 234, 309, 342
Hin1II	CATG	2 cut(s)	166, 946
Hin6I	GCGC	3 cut(s)	147, 309, 726
HinP1I	GCGC	3 cut(s)	147, 309, 726
HindIII	AAGCTT	2 cut(s)	528, 773
HinfI	GANTC	6 cut(s)	95, 257, 429, 542, 758, 1086
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	3 cut(s)	40, 202, 415
Hpy166II	GTNNAC	2 cut(s)	319, 981
Hpy188I	TCNGA	8 cut(s)	61, 94, 223, 256, 466, 771, 1021, 1128
Hpy8I	GTNNAC	2 cut(s)	319, 981
HpyAV	CCTTC	4 cut(s)	572, 715, 969, 998
HpyCH4III	ACNGT	2 cut(s)	42, 204
HpyCH4IV	ACGT	3 cut(s)	72, 234, 321
HpyCH4V	TGCA	3 cut(s)	159, 594, 754
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 133, 272, 295, 350
HpyF3I	CTNAG	7 cut(s)	132, 294, 360, 465, 788, 1020, 1127
HpySE526I	ACGT	3 cut(s)	72, 234, 321
Hsp92I	GRCGYC	5 cut(s)	72, 147, 234, 309, 342
Hsp92II	CATG	2 cut(s)	166, 946
HspAI	GCGC	3 cut(s)	147, 309, 726
KasI	GGCGCC	2 cut(s)	146, 308
KflI	GGGWCCC	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	12, 174, 502, 905
LmnI	GCTCC	4 cut(s)	563, 817, 972, 1007
Lsp1109I	GCAGC	3 cut(s)	465, 505, 553
LweI	GCATC	2 cut(s)	505, 741
MaeII	ACGT	3 cut(s)	72, 234, 321
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	4 cut(s)	14, 176, 504, 907
MbiI	CCGCTC	2 cut(s)	104, 266
MboI	GATC	4 cut(s)	12, 174, 502, 905
MboII	GAAGA	7 cut(s)	46, 100, 208, 262, 427, 887, 1071
MflI	RGATCY	1 cut(s)	12
MluCI	AATT	7 cut(s)	534, 778, 848, 857, 912, 1075, 1110
Mly113I	GGCGCC	2 cut(s)	147, 309
MlyI	GAGTC	2 cut(s)	551, 1095
MmeI	TCCRAC	3 cut(s)	84, 246, 695
MroXI	GAANNNNTTC	2 cut(s)	762, 879
MseI	TTAA	5 cut(s)	777, 822, 900, 1098, 1135
MslI	CAYNNNNRTG	1 cut(s)	802
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	3 cut(s)	26, 188, 332
Mva1269I	GAATGC	1 cut(s)	728
MvaI	CCWGG	2 cut(s)	26, 188
MwoI	GCNNNNNNNGC	5 cut(s)	110, 133, 272, 295, 350
NarI	GGCGCC	2 cut(s)	147, 309
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	4 cut(s)	12, 174, 502, 905
NlaIII	CATG	2 cut(s)	166, 946
NlaIV	GGNNCC	5 cut(s)	148, 310, 335, 336, 968
NspI	RCATGY	2 cut(s)	166, 946
OliI	CACNNNNGTG	1 cut(s)	802
PaeI	GCATGC	1 cut(s)	946
PciI	ACATGT	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	5 cut(s)	69, 117, 231, 279, 994
PctI	GAATGC	1 cut(s)	728
PdmI	GAANNNNTTC	2 cut(s)	762, 879
PfeI	GAWTC	4 cut(s)	95, 257, 429, 758
PflFI	GACNNNGTC	2 cut(s)	71, 233
PkrI	GCNGC	6 cut(s)	23, 185, 455, 495, 568, 920
PleI	GAGTC	2 cut(s)	550, 1094
PluTI	GGCGCC	2 cut(s)	150, 312
PpsI	GAGTC	2 cut(s)	550, 1094
PpuMI	RGGWCCY	1 cut(s)	334
PscI	ACATGT	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	24, 186
PspFI	CCCAGC	1 cut(s)	456
PspGI	CCWGG	2 cut(s)	24, 186
PspN4I	GGNNCC	5 cut(s)	148, 310, 335, 336, 968
PspPI	GGNCC	1 cut(s)	334
PspPPI	RGGWCCY	1 cut(s)	334
PsrI	GAACNNNNNNTAC	2 cut(s)	197, 229
PstNI	CAGNNNCTG	1 cut(s)	1019
PsuI	RGATCY	1 cut(s)	12
PsyI	GACNNNGTC	2 cut(s)	71, 233
PvuII	CAGCTG	1 cut(s)	456
RsaI	GTAC	5 cut(s)	44, 206, 625, 678, 793
RsaNI	GTAC	5 cut(s)	43, 205, 624, 677, 792
RseI	CAYNNNNRTG	1 cut(s)	802
SaqAI	TTAA	5 cut(s)	777, 822, 900, 1098, 1135
SatI	GCNGC	6 cut(s)	22, 184, 454, 494, 567, 919
Sau3AI	GATC	4 cut(s)	12, 174, 502, 905
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	2 cut(s)	551, 1095
ScrFI	CCNGG	3 cut(s)	26, 188, 332
SfaNI	GCATC	2 cut(s)	505, 741
SfoI	GGCGCC	2 cut(s)	148, 310
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	802
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SphI	GCATGC	1 cut(s)	946
Sse9I	AATT	7 cut(s)	534, 778, 848, 857, 912, 1075, 1110
SsiI	CCGC	8 cut(s)	21, 102, 183, 264, 351, 512, 919, 1090
SspDI	GGCGCC	2 cut(s)	146, 308
StyD4I	CCNGG	3 cut(s)	24, 186, 330
StyI	CCWWGG	2 cut(s)	150, 312
TaaI	ACNGT	2 cut(s)	42, 204
TaiI	ACGT	3 cut(s)	75, 237, 324
TaqI	TCGA	5 cut(s)	9, 84, 171, 246, 369
TasI	AATT	7 cut(s)	534, 778, 848, 857, 912, 1075, 1110
TatI	WGTACW	3 cut(s)	42, 204, 791
TauI	GCSGC	3 cut(s)	24, 186, 921
TfiI	GAWTC	4 cut(s)	95, 257, 429, 758
Tru1I	TTAA	5 cut(s)	777, 822, 900, 1098, 1135
Tru9I	TTAA	5 cut(s)	777, 822, 900, 1098, 1135
TscAI	CASTG	1 cut(s)	677
TseI	GCWGC	3 cut(s)	453, 493, 566
TspDTI	ATGAA	5 cut(s)	421, 698, 734, 755, 772
TspGWI	ACGGA	3 cut(s)	427, 722, 1067
TspRI	CASTG	1 cut(s)	677
Tth111I	GACNNNGTC	2 cut(s)	71, 233
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	2 cut(s)	848, 857
XceI	RCATGY	2 cut(s)	166, 946
XmiI	GTMKAC	2 cut(s)	318, 980
XmnI	GAANNNNTTC	2 cut(s)	762, 879
ZraI	GACGTC	2 cut(s)	73, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.