Rroxscaffold_2G00150020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003421
Physical Location & Seq
Reverse (-)
87489535 .. 87491532
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150020.1

Sequence Viewer

Length: 369 bp
ATGTGGGCCCACTCGCTGGGTTTGTTAGAGCCAGCTTATCACTTAACATCAGATTTGAAAGACCTTAACCCCCAAAACCGAGGCCTCTTCTTCCTCCTCCCTCTATTGCCTCTACATTTCCGGGCGTCGAATTCAAATCCTCAATCGCTCAACGCCGCCAAGACCCACGGCGGTGTGTGCGATAGCGATGGTGGCCAAGGAGTTTCGGGAACATGGCGGAAATGCAGAAATCTTGACTTCGTGAGAGAATTCGCGGCCACCCAACCCCACCGGTTGGCTTACGGCGCGCCGTGGATCATGCCATTAAATCCCACCACAAAGAGGAAAGATCAAAACCCTCCAATTATGTTTCGATCCGTCCGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.68

Weight (kDa)

9.73

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 16, 274
AccII CGCG 2 cut(s) 254, 287
AciI CCGC 4 cut(s) 156, 171, 217, 254
AclWI GGATC 2 cut(s) 302, 348
AcoI YGGCCR 2 cut(s) 193, 255
AcsI RAATTY 2 cut(s) 130, 248
AcyI GRCGYC 1 cut(s) 125
AfiI CCNNNNNNNGG 3 cut(s) 16, 274, 321
AgeI ACCGGT 1 cut(s) 270
AgsI TTSAA 2 cut(s) 58, 135
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
AlwI GGATC 2 cut(s) 302, 348
AoxI GGCC 4 cut(s) 6, 82, 193, 255
ApaI GGGCCC 1 cut(s) 10
ApoI RAATTY 2 cut(s) 130, 248
AscI GGCGCGCC 1 cut(s) 285
AsiGI ACCGGT 1 cut(s) 270
AspLEI GCGC 2 cut(s) 287, 289
AspS9I GGNCC 2 cut(s) 6, 7
AsuC2I CCSGG 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 10
BalI TGGCCA 1 cut(s) 195
BanII GRGCYC 1 cut(s) 10
BccI CCATC 1 cut(s) 182
BceAI ACGGC 3 cut(s) 184, 274, 298
BcnI CCSGG 1 cut(s) 122
BisI GCNGC 2 cut(s) 156, 255
BlsI GCNGC 2 cut(s) 157, 256
Bme1390I CCNGG 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 6, 7
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 4 cut(s) 79, 166, 196, 290
BsaWI WCCGGW 1 cut(s) 270
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 274, 321
Bse118I RCCGGY 1 cut(s) 270
BseDI CCNNGG 4 cut(s) 79, 166, 196, 290
BseLI CCNNNNNNNGG 3 cut(s) 16, 274, 321
BsePI GCGCGC 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 10
BseYI CCCAGC 1 cut(s) 16
Bsh1236I CGCG 2 cut(s) 254, 287
BshFI GGCC 4 cut(s) 8, 84, 195, 257
BshTI ACCGGT 1 cut(s) 270
BsiSI CCGG 2 cut(s) 121, 271
BslI CCNNNNNNNGG 3 cut(s) 16, 274, 321
BsnI GGCC 4 cut(s) 8, 84, 195, 257
Bsp120I GGGCCC 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 294, 328, 353
BspACI CCGC 4 cut(s) 156, 171, 217, 254
BspANI GGCC 4 cut(s) 8, 84, 195, 257
BspFNI CGCG 2 cut(s) 254, 287
BspLI GGNNCC 1 cut(s) 8
BspPI GGATC 2 cut(s) 302, 348
BsrFI RCCGGY 1 cut(s) 270
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 4 cut(s) 79, 166, 196, 290
BssHII GCGCGC 1 cut(s) 285
BssMI GATC 3 cut(s) 294, 328, 353
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 33, 287
BstDSI CCRYGG 2 cut(s) 166, 290
BstFNI CGCG 2 cut(s) 254, 287
BstHHI GCGC 2 cut(s) 287, 289
BstKTI GATC 3 cut(s) 297, 331, 356
BstMBI GATC 3 cut(s) 294, 328, 353
BstMWI GCNNNNNNNGC 3 cut(s) 177, 192, 284
BstSCI CCNGG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 10
BstUI CGCG 2 cut(s) 254, 287
BsuRI GGCC 4 cut(s) 8, 84, 195, 257
BtgI CCRYGG 2 cut(s) 166, 290
BtgZI GCGATG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 33, 287
CfoI GCGC 2 cut(s) 287, 289
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 6, 7
CseI GACGC 1 cut(s) 114
CspAI ACCGGT 1 cut(s) 270
CviAII CATG 2 cut(s) 213, 298
CviJI RGCY 7 cut(s) 8, 31, 35, 84, 195, 257, 278
CviKI_1 RGCY 7 cut(s) 8, 31, 35, 84, 195, 257, 278
DpnI GATC 3 cut(s) 296, 330, 355
DpnII GATC 3 cut(s) 294, 328, 353
EaeI YGGCCR 2 cut(s) 193, 255
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 10
EcoRI GAATTC 2 cut(s) 130, 248
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 2 cut(s) 216, 301
FaiI YATR 3 cut(s) 214, 299, 347
FatI CATG 2 cut(s) 212, 297
Fnu4HI GCNGC 2 cut(s) 156, 255
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 2 cut(s) 156, 255
GlaI GCGC 2 cut(s) 286, 288
GluI GCNGC 2 cut(s) 156, 255
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 4 cut(s) 8, 84, 195, 257
HapII CCGG 2 cut(s) 121, 271
HgaI GACGC 1 cut(s) 114
HhaI GCGC 2 cut(s) 287, 289
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 2 cut(s) 216, 301
Hin6I GCGC 2 cut(s) 285, 287
HinP1I GCGC 2 cut(s) 285, 287
HpaII CCGG 2 cut(s) 121, 271
Hpy188I TCNGA 2 cut(s) 52, 362
Hpy188III TCNNGA 3 cut(s) 207, 233, 241
Hpy99I CGWCG 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 192, 284
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 2 cut(s) 216, 301
HspAI GCGC 2 cut(s) 285, 287
Kzo9I GATC 3 cut(s) 294, 328, 353
LpnPI CCDG 4 cut(s) 2, 45, 134, 284
MalI GATC 3 cut(s) 296, 330, 355
MboI GATC 3 cut(s) 294, 328, 353
MboII GAAGA 2 cut(s) 79, 82
MhlI GDGCHC 1 cut(s) 10
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 3 cut(s) 130, 248, 342
MluNI TGGCCA 1 cut(s) 195
MnlI CCTC 9 cut(s) 74, 95, 104, 107, 111, 120, 150, 315, 348
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 3 cut(s) 44, 66, 305
MslI CAYNNNNRTG 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 195
MspI CCGG 2 cut(s) 121, 271
MspR9I CCNGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 254, 287
MwoI GCNNNNNNNGC 3 cut(s) 177, 192, 284
NciI CCSGG 1 cut(s) 122
NdeII GATC 3 cut(s) 294, 328, 353
NlaIII CATG 2 cut(s) 216, 301
NlaIV GGNNCC 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 171
PalAI GGCGCGCC 1 cut(s) 285
PauI GCGCGC 1 cut(s) 285
PceI AGGCCT 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 358
PflMI CCANNNNNTGG 2 cut(s) 16, 274
PinAI ACCGGT 1 cut(s) 270
PkrI GCNGC 2 cut(s) 157, 256
PspFI CCCAGC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 8
PspOMI GGGCCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 6, 7
PteI GCGCGC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 3 cut(s) 44, 66, 305
SatI GCNGC 2 cut(s) 156, 255
Sau3AI GATC 3 cut(s) 294, 328, 353
Sau96I GGNCC 2 cut(s) 6, 7
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 10
SetI ASST 2 cut(s) 37, 66
SgsI GGCGCGCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 3 cut(s) 130, 248, 342
SseBI AGGCCT 1 cut(s) 84
SsiI CCGC 4 cut(s) 156, 171, 217, 254
StuI AGGCCT 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 196
TaqI TCGA 2 cut(s) 128, 352
TasI AATT 3 cut(s) 130, 248, 342
TauI GCSGC 2 cut(s) 158, 257
Tru1I TTAA 3 cut(s) 44, 66, 305
Tru9I TTAA 3 cut(s) 44, 66, 305
TspGWI ACGGA 1 cut(s) 346
Van91I CCANNNNNTGG 2 cut(s) 16, 274
XapI RAATTY 2 cut(s) 130, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.