Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001665.1

Orthogroup ID

OG0003421

Physical Location & Seq

Genomic Coordinates Reverse (-)

132644 .. 134581

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001665.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggggttgtggagtgccctctggatgcctgtaaatctctcccgacaactctgcatgttaaaaggcgagttgactgtccatcccaaacccaatgggttcgaaatcatctgcgggttggtgatttacagactgtacaagttgatcttctccgacagcgacgacgtcttgggtgtcgagacctctgattctactgctctcttcgccatcgctaacaggctcgctaagctctatgatggcgacaaggtttccgttggcctccggatccctgacgccgataccgctttccctaagcaaatcgatttggttctcaaaggggaggcagtggtgatagccgtcaagaacttgtcaggattcatctccatcaagcctgtggaagctaggtttctgagtttccctaagcaaatcgatttggttctcaaaggggaggcagtggtgatagccgtcaagaacttgtcaggattcatctccatcaagcctgtggaagctagggtttcgatggagtcggagagtctttctttgcttccggagtggaacttcaccaagattttgaggatcttcacaggaacgctcatctggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NERD

Protein Analysis

193

Amino Acids

21.38

Weight (kDa)

8.51

Isoelectric Point (pI)

24.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65020
fragaria_vesca	FvH4_7g34140
malus_domestica	MD01G1237700.v1.1 MD07G1310300.v1.1
prunus_persica	Prupe.2G328100_v2.0.a1 Prupe.2G328100_v2.0.a1
pyrus_communis	pycom01g24540 pycom07g28240
rosa_chinensis	RchiOBHm_Chr1g0384491 RchiOBHm_Chr7g0241921
rosa_laevigata	RLG00000008658 RLG00000011153 RLG00000026037 RLG00000032877
rosa_multiflora	Rmu_sc0001665.1_g000027 Rmu_sc0003373.1_g000009 Rmu_sc0006005.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063320 Rroxscaffold_2G00091330 Rroxscaffold_2G00098790 Rroxscaffold_2G00150020 Rroxscaffold_4G00276660 Rroxscaffold_7G00209860
rosa_rugosa	Rorug01G0448200
rosa_samantha	Rh1AG189400 Rh1AG473400 Rh1BG431400 Rh1CG175100 Rh1CG444600 Rh1DG463800 Rh5AG066100 Rh6BG034800 Rh7AG206000 Rh7DG213200
rosa_wichuraiana	Rw1G039920 Rw4G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AccIII	TCCGGA	2 cut(s)	258, 523
AciI	CCGC	2 cut(s)	111, 279
AclWI	GGATC	3 cut(s)	256, 269, 560
AcyI	GRCGYC	2 cut(s)	162, 270
AfaI	GTAC	1 cut(s)	134
AluBI	AGCT	3 cut(s)	226, 377, 485
AluI	AGCT	3 cut(s)	226, 377, 485
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	256, 269, 560
Aor13HI	TCCGGA	2 cut(s)	258, 523
AoxI	GGCC	1 cut(s)	253
AsuHPI	GGTGA	4 cut(s)	130, 337, 445, 529
AsuII	TTCGAA	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	261
BccI	CCATC	6 cut(s)	87, 212, 227, 368, 476, 490
BceAI	ACGGC	2 cut(s)	317, 425
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	378, 486
BlpI	GCTNAGC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	263
BmsI	GCATC	1 cut(s)	15
Bpu10I	CCTNAGC	2 cut(s)	288, 396
Bpu1102I	GCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	99
Bsa29I	ATCGAT	2 cut(s)	297, 405
BsaHI	GRCGYC	2 cut(s)	162, 270
BsaI	GGTCTC	1 cut(s)	170
BsaWI	WCCGGW	2 cut(s)	258, 523
BseAI	TCCGGA	2 cut(s)	258, 523
BseCI	ATCGAT	2 cut(s)	297, 405
BseGI	GGATG	2 cut(s)	30, 79
BseMII	CTCAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	255
BshVI	ATCGAT	2 cut(s)	297, 405
BsiSI	CCGG	2 cut(s)	259, 524
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp13I	TCCGGA	2 cut(s)	258, 523
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	141, 261, 552
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	2 cut(s)	111, 279
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	378
BspDI	ATCGAT	2 cut(s)	297, 405
BspEI	TCCGGA	2 cut(s)	258, 523
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	3 cut(s)	256, 269, 560
BspT104I	TTCGAA	1 cut(s)	99
BspTNI	GGTCTC	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	132
BssMI	GATC	3 cut(s)	141, 261, 552
BssNI	GRCGYC	2 cut(s)	162, 270
Bst4CI	ACNGT	2 cut(s)	76, 132
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	2 cut(s)	162, 270
BstAUI	TGTACA	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	4 cut(s)	222, 288, 386, 396
BstF5I	GGATG	2 cut(s)	30, 79
BstKTI	GATC	3 cut(s)	144, 264, 555
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	3 cut(s)	141, 261, 552
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 223, 278
BstNSI	RCATGY	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	19
BstX2I	RGATCY	2 cut(s)	261, 552
BstYI	RGATCY	2 cut(s)	261, 552
Bsu15I	ATCGAT	2 cut(s)	297, 405
BsuRI	GGCC	1 cut(s)	255
BsuTUI	ATCGAT	2 cut(s)	297, 405
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	30, 79
BtsI	GCAGTG	2 cut(s)	327, 435
BtsIMutI	CAGTG	2 cut(s)	327, 435
Cac8I	GCNNGC	1 cut(s)	219
ClaI	ATCGAT	2 cut(s)	297, 405
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	9 cut(s)	217, 226, 255, 332, 367, 377, 440, 475, 485
CviKI_1	RGCY	9 cut(s)	217, 226, 255, 332, 367, 377, 440, 475, 485
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	4 cut(s)	222, 288, 386, 396
DpnI	GATC	3 cut(s)	143, 263, 554
DpnII	GATC	3 cut(s)	141, 261, 552
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	170
FaeI	CATG	1 cut(s)	58
FaiI	YATR	2 cut(s)	56, 231
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	1 cut(s)	54
FauI	CCCGC	1 cut(s)	104
FokI	GGATG	2 cut(s)	37, 66
FspBI	CTAG	2 cut(s)	378, 486
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	2 cut(s)	259, 524
HgaI	GACGC	1 cut(s)	278
Hin1I	GRCGYC	2 cut(s)	162, 270
Hin1II	CATG	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	5 cut(s)	185, 351, 459, 500, 508
HpaII	CCGG	2 cut(s)	259, 524
HphI	GGTGA	4 cut(s)	130, 337, 445, 529
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	4 cut(s)	151, 184, 387, 505
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	2 cut(s)	161, 164
HpyCH4III	ACNGT	2 cut(s)	76, 132
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 223, 278
HpyF3I	CTNAG	4 cut(s)	222, 288, 386, 396
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	2 cut(s)	162, 270
Hsp92II	CATG	1 cut(s)	58
Kpn2I	TCCGGA	2 cut(s)	258, 523
Kzo9I	GATC	3 cut(s)	141, 261, 552
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	2 cut(s)	378, 486
MaeII	ACGT	1 cut(s)	162
MalI	GATC	3 cut(s)	143, 263, 554
MboI	GATC	3 cut(s)	141, 261, 552
MboII	GAAGA	3 cut(s)	136, 190, 547
MflI	RGATCY	2 cut(s)	261, 552
MhlI	GDGCHC	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	509, 517
MmeI	TCCRAC	2 cut(s)	174, 483
MnlI	CCTC	6 cut(s)	29, 190, 266, 310, 418, 543
MroI	TCCGGA	2 cut(s)	258, 523
MseI	TTAA	1 cut(s)	59
MspI	CCGG	2 cut(s)	259, 524
MwoI	GCNNNNNNNGC	3 cut(s)	200, 223, 278
NdeII	GATC	3 cut(s)	141, 261, 552
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	185, 351, 459
PflFI	GACNNNGTC	1 cut(s)	161
PleI	GAGTC	2 cut(s)	508, 516
PpsI	GAGTC	2 cut(s)	508, 516
PspN4I	GGNNCC	1 cut(s)	263
PsuI	RGATCY	2 cut(s)	261, 552
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	3 cut(s)	141, 261, 552
SchI	GAGTC	2 cut(s)	509, 517
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	7 cut(s)	165, 182, 228, 246, 379, 383, 487
SfaNI	GCATC	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	99
SsiI	CCGC	2 cut(s)	111, 279
SspMI	CTAG	2 cut(s)	378, 486
TaaI	ACNGT	2 cut(s)	76, 132
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	5 cut(s)	99, 174, 297, 405, 494
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	185, 351, 459
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	2 cut(s)	327, 435
TspDTI	ATGAA	2 cut(s)	343, 451
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	327, 435
Tth111I	GACNNNGTC	1 cut(s)	161
XceI	RCATGY	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	2 cut(s)	367, 475
XspI	CTAG	2 cut(s)	378, 486
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.