Rroxscaffold_4G00276660

Nuclease-related domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003421
Physical Location & Seq
Forward (+)
192911 .. 195401
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00276660.1

Sequence Viewer

Length: 975 bp
ATGTGGTTCGAAATCATCTGTGGCCTGGTGATCTACAGACTGTACAAGTTGATCTTCTCCGACGGCGACGACGTCTTGGATGTCGAGACCTCTGATTCTACTGCTCTCTTCGCCGTCGCCGACAGGCTCGCTAAGCTCTACGATGGCGCCAAGGTCTACGTTGGCCTCCGGGTCCCCGACGCCGATACCGCTTCCCCTCAGCACATCGATTTGGTTCTCCTCAACAAAGGGGAGGCCGTGGTGATAGCCGTGAAGAACTTGTCAGGATTCATCTCCGTCAAGCCCGATGGCAGCTGGGTTTCTGAGAGCCTCACTAAACACAAAATAGAGCAGCATCCTGATCCTCTGGCGGAGACAAAAAGACAAGCTTCAATTCTTGAGTCCTATCTTGAACAAAGAGGAGCTGCTTTACCAGAAGGATATTTGTCTTACAAAGTAATACTTTCCAATCCAAAAGTATGTACTATTCAGTCAAGCAGTTTCCCACCAGAAATCATTACTTACGACCAGTGGGTACAAATGAAACCAGAACCAAAAAGTATGTTTTCTGGTTGGATGAAGGGCGCATTCCGTGGTGGAAAGAAAGAGATGCAAGAATCTATTCATCAGAAGCTTAATTTCATTCTTAGTACAGCACCAATGTGGGATAGGTTGGAGCTTAAAGGTAACAAGTATGTTCTAGGGGAATTTCTGGAATTCAAGGGTAAGCAGGAAGATGTTCAGGCTTTGAGGCATATTAAAAGATCAAAAATTAGCCGCCTTGTTGTCCAAAAGACAAGCATGCTTGGATTTGGCCCCTCAAGGCTCCATGTTCTGTATACTCGTCGTGATTACCGAAGTGAAGGAGCTTCAGCTTCTGAGTGGAAAGAAGTAAATGTAAGGTCAAGCACGGAGGTTGTCTTTCAGCTTGACAATTCTTCAAAAGTCCGCAAGTTTAAGCTCTCCTCAATTTGTTCTATGTCACTGAGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NERD

Protein Analysis

324

Amino Acids

36.54

Weight (kDa)

9.0

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NERD PF08378 37 - 137 3e-12 Nuclease-related domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 2 cut(s) 156, 818
AciI CCGC 4 cut(s) 189, 350, 757, 928
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 2 cut(s) 686, 695
AcuI CTGAAG 1 cut(s) 834
AcyI GRCGYC 3 cut(s) 72, 147, 180
AdeI CACNNNGTG 1 cut(s) 968
AfaI GTAC 4 cut(s) 44, 463, 516, 631
AgsI TTSAA 4 cut(s) 372, 392, 700, 921
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 1 cut(s) 640
Alw26I GTCTC 2 cut(s) 80, 347
AlwI GGATC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 857
AoxI GGCC 4 cut(s) 22, 163, 234, 793
ApeKI GCWGC 3 cut(s) 291, 331, 404
ApoI RAATTY 2 cut(s) 686, 695
Asp700I GAANNNNTTC 2 cut(s) 600, 717
AspLEI GCGC 2 cut(s) 149, 566
AspS9I GGNCC 2 cut(s) 172, 794
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 40, 253
AsuII TTCGAA 1 cut(s) 9
AvaII GGWCC 1 cut(s) 172
BanI GGYRCC 1 cut(s) 146
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 303, 343, 391
BccI CCATC 2 cut(s) 137, 281
BceAI ACGGC 4 cut(s) 79, 98, 221, 233
BciT130I CCWGG 1 cut(s) 26
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 80, 347
BfaI CTAG 1 cut(s) 680
BfmI CTRYAG 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 150
BisI GCNGC 4 cut(s) 292, 332, 405, 757
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 4 cut(s) 293, 333, 406, 758
Bme1390I CCNGG 2 cut(s) 26, 170
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 172, 794
BmiI GGNNCC 5 cut(s) 148, 173, 174, 796, 806
BmrFI CCNGG 2 cut(s) 26, 170
BmsI GCATC 2 cut(s) 343, 579
Bpu10I CCTNAGC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 398, 784
BpuMI CCSGG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 207
BsaHI GRCGYC 3 cut(s) 72, 147, 180
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 150, 237, 571
Bse1I ACTGG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 26
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 150, 237, 571
BseGI GGATG 3 cut(s) 85, 334, 561
BseMII CTCAG 4 cut(s) 212, 294, 849, 956
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 3 cut(s) 209, 414, 934
BseXI GCAGC 3 cut(s) 303, 343, 391
BseYI CCCAGC 1 cut(s) 294
BshFI GGCC 4 cut(s) 24, 165, 236, 795
BshNI GGYRCC 1 cut(s) 146
BshVI ATCGAT 1 cut(s) 207
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 80, 347
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 566
BsnI GGCC 4 cut(s) 24, 165, 236, 795
Bso31I GGTCTC 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 4 cut(s) 30, 51, 340, 743
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 4 cut(s) 189, 350, 757, 928
BspANI GGCC 4 cut(s) 24, 165, 236, 795
BspCNI CTCAG 4 cut(s) 211, 295, 850, 957
BspDI ATCGAT 1 cut(s) 207
BspLI GGNNCC 5 cut(s) 148, 173, 174, 796, 806
BspPI GGATC 1 cut(s) 335
BspT104I TTCGAA 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 3 cut(s) 150, 237, 571
BssMI GATC 4 cut(s) 30, 51, 340, 743
BssNAI GTATAC 1 cut(s) 819
BssNI GRCGYC 3 cut(s) 72, 147, 180
BssT1I CCWWGG 1 cut(s) 150
Bst1107I GTATAC 1 cut(s) 819
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 3 cut(s) 72, 147, 180
BstAUI TGTACA 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 129, 782
BstDEI CTNAG 6 cut(s) 132, 198, 303, 626, 858, 965
BstDSI CCRYGG 2 cut(s) 237, 571
BstF5I GGATG 3 cut(s) 85, 334, 561
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 2 cut(s) 149, 566
BstKTI GATC 4 cut(s) 33, 54, 343, 746
BstMAI GTCTC 2 cut(s) 80, 347
BstMBI GATC 4 cut(s) 30, 51, 340, 743
BstMWI GCNNNNNNNGC 3 cut(s) 110, 133, 188
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 2 cut(s) 24, 168
BstSFI CTRYAG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 303, 343, 391
BstZ17I GTATAC 1 cut(s) 819
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 4 cut(s) 24, 165, 236, 795
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 2 cut(s) 237, 571
BtsCI GGATG 3 cut(s) 85, 334, 561
BtsIMutI CAGTG 2 cut(s) 515, 962
Cac8I GCNNGC 2 cut(s) 129, 782
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 2 cut(s) 149, 566
Cfr13I GGNCC 2 cut(s) 172, 794
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 1 cut(s) 188
Csp6I GTAC 4 cut(s) 43, 462, 515, 630
CviAII CATG 2 cut(s) 781, 809
CviQI GTAC 4 cut(s) 43, 462, 515, 630
DdeI CTNAG 6 cut(s) 132, 198, 303, 626, 858, 965
DinI GGCGCC 1 cut(s) 148
DpnI GATC 4 cut(s) 32, 53, 342, 745
DpnII GATC 4 cut(s) 30, 51, 340, 743
DraIII CACNNNGTG 1 cut(s) 968
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 834
EcoO109I RGGNCCY 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 695
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 148
EheI GGCGCC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 784, 812
FaiI YATR 8 cut(s) 460, 542, 675, 735, 782, 810, 819, 959
FalI AAGNNNNNCTT 6 cut(s) 38, 70, 352, 384, 426, 458
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 780, 808
FblI GTMKAC 2 cut(s) 156, 818
Fnu4HI GCNGC 4 cut(s) 292, 332, 405, 757
FokI GGATG 3 cut(s) 92, 321, 568
Fsp4HI GCNGC 4 cut(s) 292, 332, 405, 757
FspBI CTAG 1 cut(s) 680
GlaI GCGC 2 cut(s) 148, 565
GluI GCNGC 4 cut(s) 292, 332, 405, 757
GsaI CCCAGC 1 cut(s) 298
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 4 cut(s) 24, 165, 236, 795
HapII CCGG 1 cut(s) 169
HgaI GACGC 1 cut(s) 188
HhaI GCGC 2 cut(s) 149, 566
Hin1I GRCGYC 3 cut(s) 72, 147, 180
Hin1II CATG 2 cut(s) 784, 812
Hin6I GCGC 2 cut(s) 147, 564
HinP1I GCGC 2 cut(s) 147, 564
HindIII AAGCTT 2 cut(s) 366, 611
HinfI GANTC 4 cut(s) 95, 267, 380, 596
HpaII CCGG 1 cut(s) 169
HphI GGTGA 2 cut(s) 40, 253
Hpy166II GTNNAC 2 cut(s) 157, 819
Hpy188I TCNGA 5 cut(s) 61, 94, 304, 609, 859
Hpy188III TCNNGA 7 cut(s) 85, 264, 338, 377, 389, 692, 827
Hpy8I GTNNAC 2 cut(s) 157, 819
Hpy99I CGWCG 6 cut(s) 65, 71, 74, 119, 182, 828
HpyAV CCTTC 3 cut(s) 410, 553, 836
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 2 cut(s) 72, 159
HpyCH4V TGCA 1 cut(s) 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 133, 188
HpyF3I CTNAG 6 cut(s) 132, 198, 303, 626, 858, 965
HpySE526I ACGT 2 cut(s) 72, 159
Hsp92I GRCGYC 3 cut(s) 72, 147, 180
Hsp92II CATG 2 cut(s) 784, 812
HspAI GCGC 2 cut(s) 147, 564
KasI GGCGCC 1 cut(s) 146
KflI GGGWCCC 1 cut(s) 172
Kzo9I GATC 4 cut(s) 30, 51, 340, 743
LmnI GCTCC 4 cut(s) 401, 655, 810, 845
Lsp1109I GCAGC 3 cut(s) 303, 343, 391
LweI GCATC 2 cut(s) 343, 579
MaeI CTAG 1 cut(s) 680
MaeII ACGT 2 cut(s) 72, 159
MaeIII GTNAC 2 cut(s) 665, 960
MalI GATC 4 cut(s) 32, 53, 342, 745
MboI GATC 4 cut(s) 30, 51, 340, 743
MboII GAAGA 5 cut(s) 46, 100, 265, 725, 909
MluCI AATT 7 cut(s) 372, 616, 686, 695, 750, 913, 948
Mly113I GGCGCC 1 cut(s) 147
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 3 cut(s) 84, 533, 633
MroXI GAANNNNTTC 2 cut(s) 600, 717
MseI TTAA 5 cut(s) 615, 660, 738, 936, 973
MslI CAYNNNNRTG 1 cut(s) 640
MspA1I CMGCKG 1 cut(s) 294
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 26, 170
Mva1269I GAATGC 1 cut(s) 566
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 110, 133, 188
NarI GGCGCC 1 cut(s) 147
NciI CCSGG 1 cut(s) 170
NdeII GATC 4 cut(s) 30, 51, 340, 743
NlaIII CATG 2 cut(s) 784, 812
NlaIV GGNNCC 5 cut(s) 148, 173, 174, 796, 806
NmuCI GTSAC 1 cut(s) 960
NspI RCATGY 1 cut(s) 784
NspV TTCGAA 1 cut(s) 9
OliI CACNNNNGTG 1 cut(s) 640
PaeI GCATGC 1 cut(s) 784
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 117, 832
PctI GAATGC 1 cut(s) 566
PdmI GAANNNNTTC 2 cut(s) 600, 717
PfeI GAWTC 3 cut(s) 95, 267, 596
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 4 cut(s) 293, 333, 406, 758
PleI GAGTC 1 cut(s) 388
PluTI GGCGCC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 5 cut(s) 148, 173, 174, 796, 806
PspPI GGNCC 2 cut(s) 172, 794
PspPPI RGGWCCY 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 857
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 294
RsaI GTAC 4 cut(s) 44, 463, 516, 631
RsaNI GTAC 4 cut(s) 43, 462, 515, 630
RseI CAYNNNNRTG 1 cut(s) 640
SaqAI TTAA 5 cut(s) 615, 660, 738, 936, 973
SatI GCNGC 4 cut(s) 292, 332, 405, 757
Sau3AI GATC 4 cut(s) 30, 51, 340, 743
Sau96I GGNCC 2 cut(s) 172, 794
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 26, 170
SfaNI GCATC 2 cut(s) 343, 579
SfcI CTRYAG 1 cut(s) 34
SfoI GGCGCC 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 9
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 640
SmlI CTYRAG 2 cut(s) 377, 799
SmoI CTYRAG 2 cut(s) 377, 799
SphI GCATGC 1 cut(s) 784
Sse9I AATT 7 cut(s) 372, 616, 686, 695, 750, 913, 948
SsiI CCGC 4 cut(s) 189, 350, 757, 928
SspDI GGCGCC 1 cut(s) 146
SspMI CTAG 1 cut(s) 680
StyD4I CCNGG 2 cut(s) 24, 168
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 2 cut(s) 75, 162
TaqI TCGA 3 cut(s) 9, 84, 207
TasI AATT 7 cut(s) 372, 616, 686, 695, 750, 913, 948
TatI WGTACW 3 cut(s) 42, 461, 629
TauI GCSGC 1 cut(s) 759
TfiI GAWTC 3 cut(s) 95, 267, 596
Tru1I TTAA 5 cut(s) 615, 660, 738, 936, 973
Tru9I TTAA 5 cut(s) 615, 660, 738, 936, 973
TscAI CASTG 2 cut(s) 515, 969
TseFI GTSAC 1 cut(s) 960
TseI GCWGC 3 cut(s) 291, 331, 404
Tsp45I GTSAC 1 cut(s) 960
TspDTI ATGAA 5 cut(s) 259, 536, 572, 593, 610
TspGWI ACGGA 3 cut(s) 265, 560, 905
TspRI CASTG 2 cut(s) 515, 969
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 2 cut(s) 686, 695
XceI RCATGY 1 cut(s) 784
XmiI GTMKAC 2 cut(s) 156, 818
XmnI GAANNNNTTC 2 cut(s) 600, 717
XspI CTAG 1 cut(s) 680
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.