Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Reverse (-)

569594 .. 570156

Gene Structure 563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G009100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCCGTACACGTCGGCGAGTAGCTTCGAGGATCTGAATCTATCACCAGAGGTGCTGAACGGCTTGTATGTAGAGACGGGGTTCAAGAAGCCCAGTAAAGTCCAGGCAATCACTTTGCCCATGATTTTAACCCCTCCCCACAACGGTTCGGGCAAAACCACTTGTTTCGTGCTTGGGATGCTCAGCTGGGTCGATCCCAATGTTAAAGCTCCTCAGCCGCTCTGTATCTGCCCCACCAAAGAGTTGGCCATTCAGAATATGGAGGTCCTTCAGAAGACGGGGAAATACACAGGGATAAACGCAGAATGTGTTGTCCTAACAGAGAGGACGAGTTCTACGTCCATTCAATCTCGAGCACCAAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

123

Amino Acids

13.24

Weight (kDa)

8.38

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	220
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	2 cut(s)	39, 188
AcoI	YGGCCR	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	85, 347
AjiI	CACGTC	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	24, 186, 209
AluI	AGCT	3 cut(s)	24, 186, 209
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	39, 188
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	358
BbvCI	CCTCAGC	1 cut(s)	213
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	68
BisI	GCNGC	1 cut(s)	218
BlpI	GCTNAGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	351
BmgBI	CACGTC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	2 cut(s)	196, 227
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	201
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	31, 193
Bsp1720I	GCTNAGC	1 cut(s)	182
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	195, 226
BspPI	GGATC	2 cut(s)	39, 188
BsrBI	CCGCTC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	31, 193
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	182, 213
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	2 cut(s)	34, 196
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	31, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	248
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	7 cut(s)	24, 63, 91, 186, 209, 217, 248
CviKI_1	RGCY	7 cut(s)	24, 63, 91, 186, 209, 217, 248
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	182, 213
DpnI	GATC	2 cut(s)	33, 195
DpnII	GATC	2 cut(s)	31, 193
EaeI	YGGCCR	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	124
FaiI	YATR	3 cut(s)	69, 122, 260
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	218
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	36, 255, 273
Hpy188III	TCNNGA	2 cut(s)	85, 351
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	2 cut(s)	11, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	2 cut(s)	182, 213
HpySE526I	ACGT	2 cut(s)	11, 338
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	31, 193
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	60, 89, 106, 116, 172, 276
LweI	GCATC	1 cut(s)	168
MaeII	ACGT	2 cut(s)	11, 338
MalI	GATC	2 cut(s)	33, 195
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	2 cut(s)	31, 193
MboII	GAAGA	1 cut(s)	286
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	1 cut(s)	362
MluNI	TGGCCA	1 cut(s)	248
MnlI	CCTC	6 cut(s)	22, 43, 144, 222, 256, 318
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	2 cut(s)	128, 204
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	2 cut(s)	31, 193
NlaIII	CATG	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	186
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	128, 204
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	2 cut(s)	31, 193
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	7 cut(s)	14, 26, 54, 188, 211, 267, 341
SfaNI	GCATC	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	2 cut(s)	14, 341
TaqI	TCGA	3 cut(s)	27, 192, 352
TasI	AATT	1 cut(s)	362
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	128, 204
Tru9I	TTAA	2 cut(s)	128, 204
VpaK11BI	GGWCC	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	2 cut(s)	241, 256
XhoI	CTCGAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.