Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006582.1

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Forward (+)

109339 .. 109641

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006582.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgattgacaccagttacgctttatttgcacaatccaagaagagttcactattgcaaccattagatgcccaaagtaaacacaacgccaattccacgatgggcttcaagaagctcagtaaaatccaggcgatcactctgcctacgattttgactcctccgtacaaagatctggttgctcaggcccataatggttccgggaagacgacctgtttcgtgcttggtatgctcagccgtgttgatcccgatgtgaaagctcctcaggctctctgcatctgtcccaccagagttggctattcaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

100

Amino Acids

10.73

Weight (kDa)

9.47

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	233
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	2 cut(s)	112, 254
AluI	AGCT	2 cut(s)	112, 254
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	206
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	216
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	196
BglII	AGATCT	1 cut(s)	166
BlpI	GCTNAGC	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	125, 196
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	125, 196
BmsI	GCATC	2 cut(s)	55, 279
BpiI	GAAGAC	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu1102I	GCTNAGC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	12
Bse21I	CCTNAGG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	125
BseMII	CTCAG	4 cut(s)	127, 191, 241, 272
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	2 cut(s)	144, 246
BshFI	GGCC	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	129, 166, 238
Bsp1720I	GCTNAGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	4 cut(s)	126, 190, 240, 271
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	129, 166, 238
Bst2UI	CCWGG	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	35
BstDEI	CTNAG	4 cut(s)	113, 177, 227, 258
BstKTI	GATC	3 cut(s)	132, 169, 241
BstMBI	GATC	3 cut(s)	129, 166, 238
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 223, 260
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	123, 194
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
Bsu36I	CCTNAGG	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	160
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviJI	RGCY	7 cut(s)	102, 112, 182, 231, 254, 263, 291
CviKI_1	RGCY	7 cut(s)	102, 112, 182, 231, 254, 263, 291
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	4 cut(s)	113, 177, 227, 258
DpnI	GATC	3 cut(s)	131, 168, 240
DpnII	GATC	3 cut(s)	129, 166, 238
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	123
FaiI	YATR	2 cut(s)	186, 224
FaqI	GGGAC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	195
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	47, 77
Hpy188III	TCNNGA	2 cut(s)	106, 242
Hpy8I	GTNNAC	2 cut(s)	47, 77
HpyCH4V	TGCA	3 cut(s)	29, 55, 270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 223, 260
HpyF3I	CTNAG	4 cut(s)	113, 177, 227, 258
Kzo9I	GATC	3 cut(s)	129, 166, 238
LmnI	GCTCC	1 cut(s)	259
LweI	GCATC	2 cut(s)	55, 279
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	131, 168, 240
MboI	GATC	3 cut(s)	129, 166, 238
MboII	GAAGA	2 cut(s)	52, 211
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	165, 267
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	125, 196
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	26, 223, 260
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	3 cut(s)	129, 166, 238
NlaIV	GGNNCC	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	194
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
Sau3AI	GATC	3 cut(s)	129, 166, 238
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	125, 196
SetI	ASST	4 cut(s)	114, 209, 256, 301
SfaNI	GCATC	2 cut(s)	55, 279
Sse9I	AATT	1 cut(s)	88
StyD4I	CCNGG	2 cut(s)	123, 194
TasI	AATT	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.