Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Reverse (-)

16294503 .. 16297277

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAAAAGCTGGGTGTAAGCCGCGTGAAGGTCCTTGTTTTCGATGAGGCTGATCACATGCTGGCTCAGGATGGCTTCCAAGATGATTCCTTAAGGATAAAGAGGGACACAGAAAAAGTTATCCCTAACTGCCAGGTTATTCTGTTTTCAGCTACATTTAATGAAAGAGTCACAAATTTTGTCTCAAGCGTTGTGAAACGTGGTAACAATCAACTTTTTGTCAAGAAAGAAGACCTATCTTTGGAGGGTGTTAAGCAGTACAAGGTGTACTGTCCTGATGAACTGAGCAAGATTGAGGTTATCAAGACCAAAATTTTTGACCTGGGAGAAAAATTAGGTGCCCTCAACACCGAGGACAGAGACAAAATAATCAAAGAGTTTAAAGATGGTTTAACCCAAGTTCTCATATCAACTGATGTACTTGCCAGAGGCTTTGACCAACAGCAGGTTAACTGTGTTGTCAATTATGATCTTCCGGTCAAATATTCACCTGGTCCCCGGTCACAACCTGTAGAACCTGATTATGAGGTGTACCTGCATAGAATTGGGAGGGCAGGGCGTTTTGGTCGCAAGGGAGCTGTGTTTAACTTGATTTGCGATGATAATGACGAGTTGGTCATGTCAAAAATTGAGCAGTATTTTGACATCAAAGTACCAGAGGTTAAAAATACTGATGAGGCTTTTGAAGGGGCTCTTAAAACAGCTGGCTTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

238

Amino Acids

27.0

Weight (kDa)

5.62

Isoelectric Point (pI)

27.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	6 - 58	1.6e-08	DEAD/DEAH box helicase
Helicase_C	PF00271	110 - 189	3.8e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
Acc36I	ACCTGC	2 cut(s)	436, 543
AccB1I	GGYRCC	1 cut(s)	338
AccII	CGCG	1 cut(s)	24
AciI	CCGC	1 cut(s)	22
AcsI	RAATTY	2 cut(s)	175, 312
AfaI	GTAC	5 cut(s)	260, 269, 420, 533, 654
AfiI	CCNNNNNNNGG	3 cut(s)	28, 241, 445
AflII	CTTAAG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	686
AjnI	CCWGG	3 cut(s)	132, 321, 490
AluBI	AGCT	4 cut(s)	10, 152, 578, 704
AluI	AGCT	4 cut(s)	10, 152, 578, 704
Alw26I	GTCTC	2 cut(s)	187, 354
ApoI	RAATTY	2 cut(s)	175, 312
AspS9I	GGNCC	2 cut(s)	31, 494
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	1 cut(s)	480
AvaII	GGWCC	2 cut(s)	31, 494
BaeGI	GKGCMC	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	694
BbsI	GAAGAC	1 cut(s)	237
BccI	CCATC	2 cut(s)	65, 380
BciT130I	CCWGG	3 cut(s)	134, 323, 492
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	187, 354
BfmI	CTRYAG	1 cut(s)	510
BfrI	CTTAAG	1 cut(s)	91
BfuAI	ACCTGC	2 cut(s)	436, 543
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	4 cut(s)	134, 323, 492, 499
Bme18I	GGWCC	2 cut(s)	31, 494
BmgT120I	GGNCC	2 cut(s)	31, 494
BmiI	GGNNCC	2 cut(s)	340, 496
BmrFI	CCNGG	4 cut(s)	134, 323, 492, 499
BpiI	GAAGAC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	499
BsaJI	CCNNGG	3 cut(s)	322, 351, 497
BsaWI	WCCGGW	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 241, 445
BseBI	CCWGG	3 cut(s)	134, 323, 492
BseDI	CCNNGG	3 cut(s)	322, 351, 497
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	3 cut(s)	28, 241, 445
BseMII	CTCAG	2 cut(s)	80, 275
BseSI	GKGCMC	1 cut(s)	343
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	476, 499
BslFI	GGGAC	2 cut(s)	119, 480
BslI	CCNNNNNNNGG	3 cut(s)	28, 241, 445
BsmAI	GTCTC	2 cut(s)	187, 354
BsmFI	GGGAC	2 cut(s)	119, 480
Bsp1286I	GDGCHC	2 cut(s)	343, 694
Bsp143I	GATC	2 cut(s)	52, 469
BspACI	CCGC	1 cut(s)	22
BspCNI	CTCAG	2 cut(s)	79, 276
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	340, 496
BspMI	ACCTGC	2 cut(s)	436, 543
BspT107I	GGYRCC	1 cut(s)	338
BspTI	CTTAAG	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	322, 351, 497
BssMI	GATC	2 cut(s)	52, 469
Bst2UI	CCWGG	3 cut(s)	134, 323, 492
Bst4CI	ACNGT	3 cut(s)	272, 455, 714
BstAFI	CTTAAG	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	63, 706
BstDEI	CTNAG	2 cut(s)	66, 284
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	2 cut(s)	55, 472
BstMAI	GTCTC	2 cut(s)	187, 354
BstMBI	GATC	2 cut(s)	52, 469
BstNI	CCWGG	3 cut(s)	134, 323, 492
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	4 cut(s)	132, 321, 490, 497
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	343
BstUI	CGCG	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	76
BveI	ACCTGC	2 cut(s)	436, 543
Cac8I	GCNNGC	2 cut(s)	63, 706
Cfr13I	GGNCC	2 cut(s)	31, 494
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	5 cut(s)	259, 268, 419, 532, 653
CviAII	CATG	2 cut(s)	58, 619
CviQI	GTAC	5 cut(s)	259, 268, 419, 532, 653
DdeI	CTNAG	2 cut(s)	66, 284
DpnI	GATC	2 cut(s)	54, 471
DpnII	GATC	2 cut(s)	52, 469
DraI	TTTAAA	1 cut(s)	382
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	694
Eco47I	GGWCC	2 cut(s)	31, 494
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	3 cut(s)	132, 321, 490
EcoT38I	GRGCYC	1 cut(s)	694
FaeI	CATG	2 cut(s)	61, 622
FaiI	YATR	6 cut(s)	59, 407, 468, 525, 540, 620
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	2 cut(s)	119, 480
FatI	CATG	2 cut(s)	57, 618
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	22
GsaI	CCCAGC	1 cut(s)	14
HapII	CCGG	2 cut(s)	476, 499
Hin1II	CATG	2 cut(s)	61, 622
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	2 cut(s)	86, 168
HpaI	GTTAAC	1 cut(s)	451
HpaII	CCGG	2 cut(s)	476, 499
HphI	GGTGA	1 cut(s)	480
Hpy166II	GTNNAC	3 cut(s)	268, 451, 532
Hpy188III	TCNNGA	4 cut(s)	68, 223, 275, 304
Hpy8I	GTNNAC	3 cut(s)	268, 451, 532
HpyAV	CCTTC	2 cut(s)	22, 680
HpyCH4III	ACNGT	3 cut(s)	272, 455, 714
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	538
HpyF3I	CTNAG	2 cut(s)	66, 284
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	2 cut(s)	61, 622
Ksp22I	TGATCA	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	52, 469
LmnI	GCTCC	1 cut(s)	575
MabI	ACCWGGT	1 cut(s)	490
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	3 cut(s)	169, 203, 501
MalI	GATC	2 cut(s)	54, 471
MboI	GATC	2 cut(s)	52, 469
MboII	GAAGA	2 cut(s)	242, 464
MhlI	GDGCHC	2 cut(s)	343, 694
MluCI	AATT	6 cut(s)	175, 312, 332, 463, 543, 627
MlyI	GAGTC	1 cut(s)	177
MseI	TTAA	9 cut(s)	92, 159, 252, 381, 392, 450, 585, 663, 696
MspA1I	CMGCKG	1 cut(s)	704
MspCI	CTTAAG	1 cut(s)	91
MspI	CCGG	2 cut(s)	476, 499
MspR9I	CCNGG	4 cut(s)	134, 323, 492, 499
MvaI	CCWGG	3 cut(s)	134, 323, 492
MvnI	CGCG	1 cut(s)	24
NciI	CCSGG	1 cut(s)	499
NdeII	GATC	2 cut(s)	52, 469
NlaIII	CATG	2 cut(s)	61, 622
NlaIV	GGNNCC	2 cut(s)	340, 496
NmuCI	GTSAC	2 cut(s)	169, 501
NspI	RCATGY	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	3 cut(s)	132, 321, 490
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	3 cut(s)	132, 321, 490
PspN4I	GGNNCC	2 cut(s)	340, 496
PspPI	GGNCC	2 cut(s)	31, 494
PspPPI	RGGWCCY	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	5 cut(s)	260, 269, 420, 533, 654
RsaNI	GTAC	5 cut(s)	259, 268, 419, 532, 653
SaqAI	TTAA	9 cut(s)	92, 159, 252, 381, 392, 450, 585, 663, 696
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	2 cut(s)	52, 469
Sau96I	GGNCC	2 cut(s)	31, 494
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	4 cut(s)	134, 323, 492, 499
SduI	GDGCHC	2 cut(s)	343, 694
SexAI	ACCWGGT	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	31, 494
SmlI	CTYRAG	2 cut(s)	91, 184
SmoI	CTYRAG	2 cut(s)	91, 184
Sse9I	AATT	6 cut(s)	175, 312, 332, 463, 543, 627
SsiI	CCGC	1 cut(s)	22
SspI	AATATT	1 cut(s)	485
StyD4I	CCNGG	4 cut(s)	132, 321, 490, 497
TaaI	ACNGT	3 cut(s)	272, 455, 714
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	42
TasI	AATT	6 cut(s)	175, 312, 332, 463, 543, 627
TatI	WGTACW	3 cut(s)	258, 267, 418
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	9 cut(s)	92, 159, 252, 381, 392, 450, 585, 663, 696
Tru9I	TTAA	9 cut(s)	92, 159, 252, 381, 392, 450, 585, 663, 696
TseFI	GTSAC	2 cut(s)	169, 501
Tsp45I	GTSAC	2 cut(s)	169, 501
TspDTI	ATGAA	3 cut(s)	17, 177, 294
Vha464I	CTTAAG	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	31, 494
XapI	RAATTY	2 cut(s)	175, 312
XceI	RCATGY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.