RchiOBHm_Chr3g0471361

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
17246078 .. 17250566
4489 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43710

Sequence Viewer

Length: 1266 bp
ATGAACACAGGAGAAAAACACCATGAATTTAACCATTCCATGATTGGCACCAGTTACGCTTTATTTGCACAATCCAAGAGTTCACTATTGCAACCGTTAGATACCCAAAGTAAACACAACGCCAATTCCACGATGGGCTTCAAGAAGCTCAGTAAAATCCAGGCGATCACTTTGCCTATGATTTTGACTCCTCCGCACAAAGATCTGGTTGCTCAGGCCCATAATGGTTCCGGGAAGACGACCTGTTTCGTGCTTGGTATGCTCAGCCGTGTTGATCCCGATGTGAAAGCTCCTCGGGCTCTCTGCATCTGTCCCACCAGAAATATGGAGGTTTTTCAGAAGATGGGGAAATACACTGGGATTACTTCGGAGTGTGCCGTCCCTTCAGATAGGGAGAGGAATGCACCTTCGCCTAATTTCCGGGTGCCAGTTACGGCACAAATTGTGATTGGAACTCCTGGTACTATCAGGAGATGGATGTCGATGAAAAAGCTGGGTGTAAGCCGCGTGAAGGTCCTTGTTTTCGATGAGGCTGATCACATGCTGGCTGAGGATGGCTTCCAAGATGATTCCTTAAGGATAAAGAGGGACACAGAAAAAGTTATCCCTAACTGCCAGGTTATTCTGTTTTCAGCTACATTTAATGAAAGAGTCACAAATTTTGTCTCAAGCGTTGTGAAATGTGGTAACAAGCAACTTTTTGTCAAGAAAGAAGAGCTATCTTTGGAGGGTGTTAAGCAGTACAAGGTGTACTGTCCTGATGAACTGAGCAAGATTGAGGTTATCAAGACCAAAATTTTTGACCTGGGAGAAAAATTAGGACAGAGGATTATATTTGTTCGGACAAAAAATAGCGCAAGAATGTTGTATCAACAACTTTCTGATGATGGTTATGCTGTTACTGCTATTCAAGGTGCCCTCAACACCGAAGACAGAGACAAAATAATCAAAGAGTTTAAAGATGGTTTAACCCAAGTTCTCATATCAACTGATGTACTTGCCAGAGGCTTTGACCAACAGCAGGTTAACTGTGTTGTTAATTATGATCTTCCGGTCAAATTTTCACCTGATCCCCGGTCACAACCTGTAGAACCTGATTATGAGGTGTACCTGCATAGAATTGGGAGGGCAGGGCGTTTTGGTCGCAAGGGAGCTGTGTTTAACGTGATTTGCGATGATAATGACGAGTTGGTCATGTCAAAAATTGGGCAGTATTTTGACATCAAAGTACCAGTGGTAACTATTCTTGCACCTTATCCTACATAA

Protein Analysis

421

Amino Acids

47.2

Weight (kDa)

8.96

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 52 - 219 2.9e-29 DEAD/DEAH box helicase
Helicase_C PF00271 263 - 381 3.3e-25 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1190
Acc36I ACCTGC 2 cut(s) 1012, 1119
AccB1I GGYRCC 3 cut(s) 47, 424, 914
AccII CGCG 1 cut(s) 507
AciI CCGC 2 cut(s) 194, 505
AclWI GGATC 2 cut(s) 269, 1064
AcsI RAATTY 4 cut(s) 26, 658, 795, 1058
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 6 cut(s) 463, 743, 752, 996, 1109, 1230
AfiI CCNNNNNNNGG 2 cut(s) 511, 1021
AflII CTTAAG 1 cut(s) 574
AgsI TTSAA 2 cut(s) 142, 911
AjnI CCWGG 4 cut(s) 159, 457, 615, 804
AluBI AGCT 6 cut(s) 148, 290, 493, 635, 718, 1154
AluI AGCT 6 cut(s) 148, 290, 493, 635, 718, 1154
Alw26I GTCTC 2 cut(s) 670, 930
AlwI GGATC 2 cut(s) 269, 1064
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 1 cut(s) 216
ApoI RAATTY 4 cut(s) 26, 658, 795, 1058
AspLEI GCGC 1 cut(s) 857
AspS9I GGNCC 2 cut(s) 217, 514
AsuC2I CCSGG 3 cut(s) 232, 422, 1075
AsuHPI GGTGA 1 cut(s) 1056
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 1 cut(s) 514
BaeGI GKGCMC 1 cut(s) 919
BanI GGYRCC 3 cut(s) 47, 424, 914
BanII GRGCYC 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 242, 936
BbvCI CCTCAGC 1 cut(s) 549
BccI CCATC 6 cut(s) 127, 337, 468, 548, 881, 956
BceAI ACGGC 3 cut(s) 252, 362, 450
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 4 cut(s) 161, 459, 617, 806
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 3 cut(s) 232, 422, 1075
BcoDI GTCTC 2 cut(s) 670, 930
BfmI CTRYAG 1 cut(s) 1086
BfrI CTTAAG 1 cut(s) 574
BfuAI ACCTGC 2 cut(s) 1012, 1119
BglII AGATCT 1 cut(s) 202
BisI GCNGC 1 cut(s) 505
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 506
Bme1390I CCNGG 7 cut(s) 161, 232, 422, 459, 617, 806, 1075
Bme18I GGWCC 1 cut(s) 514
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 217, 514
BmiI GGNNCC 4 cut(s) 49, 229, 426, 916
BmrFI CCNGG 7 cut(s) 161, 232, 422, 459, 617, 806, 1075
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 366
BpiI GAAGAC 2 cut(s) 242, 936
Bpu10I CCTNAGC 2 cut(s) 213, 549
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 652
BpuMI CCSGG 3 cut(s) 232, 422, 1075
BsaJI CCNNGG 3 cut(s) 293, 805, 1073
BsaWI WCCGGW 1 cut(s) 1051
Bsc4I CCNNNNNNNGG 2 cut(s) 511, 1021
Bse1I ACTGG 4 cut(s) 51, 361, 428, 1232
BseBI CCWGG 4 cut(s) 161, 459, 617, 806
BseDI CCNNGG 3 cut(s) 293, 805, 1073
BseGI GGATG 2 cut(s) 483, 559
BseLI CCNNNNNNNGG 2 cut(s) 511, 1021
BseMII CTCAG 5 cut(s) 163, 227, 277, 540, 758
BseNI ACTGG 4 cut(s) 51, 361, 428, 1232
BseRI GAGGAG 2 cut(s) 180, 282
BseSI GKGCMC 1 cut(s) 919
BseYI CCCAGC 1 cut(s) 493
Bsh1236I CGCG 1 cut(s) 507
BshFI GGCC 1 cut(s) 218
BshNI GGYRCC 3 cut(s) 47, 424, 914
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 4 cut(s) 231, 421, 1052, 1075
BslFI GGGAC 3 cut(s) 297, 365, 602
BslI CCNNNNNNNGG 2 cut(s) 511, 1021
BsmAI GTCTC 2 cut(s) 670, 930
BsmFI GGGAC 3 cut(s) 297, 365, 602
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 301, 919
Bsp143I GATC 6 cut(s) 165, 202, 274, 535, 1045, 1069
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 2 cut(s) 194, 505
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 5 cut(s) 162, 226, 276, 541, 759
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 4 cut(s) 49, 229, 426, 916
BspMI ACCTGC 2 cut(s) 1012, 1119
BspPI GGATC 2 cut(s) 269, 1064
BspQI GCTCTTC 1 cut(s) 708
BspT107I GGYRCC 3 cut(s) 47, 424, 914
BspTI CTTAAG 1 cut(s) 574
BsrI ACTGG 4 cut(s) 51, 361, 428, 1232
BssECI CCNNGG 3 cut(s) 293, 805, 1073
BssMI GATC 6 cut(s) 165, 202, 274, 535, 1045, 1069
Bst2UI CCWGG 4 cut(s) 161, 459, 617, 806
Bst4CI ACNGT 3 cut(s) 96, 755, 1031
Bst6I CTCTTC 1 cut(s) 708
BstAFI CTTAAG 1 cut(s) 574
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 5 cut(s) 149, 213, 263, 549, 767
BstF5I GGATG 2 cut(s) 483, 559
BstFNI CGCG 1 cut(s) 507
BstHHI GCGC 1 cut(s) 857
BstKTI GATC 6 cut(s) 168, 205, 277, 538, 1048, 1072
BstMAI GTCTC 2 cut(s) 670, 930
BstMBI GATC 6 cut(s) 165, 202, 274, 535, 1045, 1069
BstMWI GCNNNNNNNGC 4 cut(s) 65, 259, 296, 902
BstNI CCWGG 4 cut(s) 161, 459, 617, 806
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 7 cut(s) 159, 230, 420, 457, 615, 804, 1073
BstSFI CTRYAG 1 cut(s) 1086
BstSLI GKGCMC 1 cut(s) 919
BstUI CGCG 1 cut(s) 507
BstV2I GAAGAC 2 cut(s) 242, 936
BstX2I RGATCY 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 218
BtgZI GCGATG 1 cut(s) 1188
BtsCI GGATG 2 cut(s) 483, 559
BtsIMutI CAGTG 2 cut(s) 354, 1239
BveI ACCTGC 2 cut(s) 1012, 1119
Cac8I GCNNGC 1 cut(s) 546
CfoI GCGC 1 cut(s) 857
Cfr13I GGNCC 2 cut(s) 217, 514
Csp6I GTAC 6 cut(s) 462, 742, 751, 995, 1108, 1229
CviAII CATG 4 cut(s) 23, 40, 541, 1195
CviQI GTAC 6 cut(s) 462, 742, 751, 995, 1108, 1229
DdeI CTNAG 5 cut(s) 149, 213, 263, 549, 767
DpnI GATC 6 cut(s) 167, 204, 276, 537, 1047, 1071
DpnII GATC 6 cut(s) 165, 202, 274, 535, 1045, 1069
DraI TTTAAA 1 cut(s) 958
DrdI GACNNNNNNGTC 1 cut(s) 1190
DseDI GACNNNNNNGTC 1 cut(s) 1190
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Eco24I GRGCYC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 514
EcoRII CCWGG 4 cut(s) 159, 457, 615, 804
EcoT38I GRGCYC 1 cut(s) 301
FaeI CATG 4 cut(s) 26, 43, 544, 1198
FaqI GGGAC 3 cut(s) 297, 365, 602
FatI CATG 4 cut(s) 22, 39, 540, 1194
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 1 cut(s) 505
FokI GGATG 2 cut(s) 490, 566
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 505
GlaI GCGC 1 cut(s) 856
GluI GCNGC 1 cut(s) 505
GsaI CCCAGC 1 cut(s) 497
HaeIII GGCC 1 cut(s) 218
HapII CCGG 4 cut(s) 231, 421, 1052, 1075
HhaI GCGC 1 cut(s) 857
Hin1II CATG 4 cut(s) 26, 43, 544, 1198
Hin6I GCGC 1 cut(s) 855
HinP1I GCGC 1 cut(s) 855
HincII GTYRAC 1 cut(s) 1027
HindII GTYRAC 1 cut(s) 1027
HinfI GANTC 3 cut(s) 187, 569, 651
HpaI GTTAAC 1 cut(s) 1027
HpaII CCGG 4 cut(s) 231, 421, 1052, 1075
HphI GGTGA 1 cut(s) 1056
Hpy166II GTNNAC 5 cut(s) 83, 113, 751, 1027, 1108
Hpy188I TCNGA 5 cut(s) 339, 370, 388, 843, 883
Hpy188III TCNNGA 6 cut(s) 142, 278, 469, 706, 758, 787
Hpy8I GTNNAC 5 cut(s) 83, 113, 751, 1027, 1108
HpyAV CCTTC 3 cut(s) 393, 417, 505
HpyCH4III ACNGT 3 cut(s) 96, 755, 1031
HpyCH4IV ACGT 1 cut(s) 1164
HpyCH4V TGCA 6 cut(s) 68, 91, 306, 404, 1114, 1250
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 259, 296, 902
HpyF3I CTNAG 5 cut(s) 149, 213, 263, 549, 767
HpySE526I ACGT 1 cut(s) 1164
Hsp92II CATG 4 cut(s) 26, 43, 544, 1198
HspAI GCGC 1 cut(s) 855
Ksp22I TGATCA 1 cut(s) 535
KspAI GTTAAC 1 cut(s) 1027
Kzo9I GATC 6 cut(s) 165, 202, 274, 535, 1045, 1069
LguI GCTCTTC 1 cut(s) 708
LmnI GCTCC 2 cut(s) 295, 1151
LweI GCATC 1 cut(s) 315
MaeII ACGT 1 cut(s) 1164
MaeIII GTNAC 7 cut(s) 53, 430, 652, 686, 898, 1077, 1237
MalI GATC 6 cut(s) 167, 204, 276, 537, 1047, 1071
MboI GATC 6 cut(s) 165, 202, 274, 535, 1045, 1069
MboII GAAGA 5 cut(s) 247, 352, 725, 941, 1040
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 2 cut(s) 301, 919
MlyI GAGTC 2 cut(s) 181, 660
MseI TTAA 9 cut(s) 30, 575, 642, 735, 957, 968, 1026, 1038, 1161
MspCI CTTAAG 1 cut(s) 574
MspI CCGG 4 cut(s) 231, 421, 1052, 1075
MspR9I CCNGG 7 cut(s) 161, 232, 422, 459, 617, 806, 1075
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 4 cut(s) 161, 459, 617, 806
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 4 cut(s) 65, 259, 296, 902
NciI CCSGG 3 cut(s) 232, 422, 1075
NdeII GATC 6 cut(s) 165, 202, 274, 535, 1045, 1069
NlaIII CATG 4 cut(s) 26, 43, 544, 1198
NlaIV GGNNCC 4 cut(s) 49, 229, 426, 916
NmuCI GTSAC 2 cut(s) 652, 1077
NspI RCATGY 1 cut(s) 544
PciSI GCTCTTC 1 cut(s) 708
PcsI WCGNNNNNNNCGW 1 cut(s) 1170
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 569
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 1 cut(s) 506
PleI GAGTC 2 cut(s) 181, 659
PpsI GAGTC 2 cut(s) 181, 659
PpuMI RGGWCCY 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 514
Psp6I CCWGG 4 cut(s) 159, 457, 615, 804
PspFI CCCAGC 1 cut(s) 493
PspGI CCWGG 4 cut(s) 159, 457, 615, 804
PspN4I GGNNCC 4 cut(s) 49, 229, 426, 916
PspPI GGNCC 2 cut(s) 217, 514
PspPPI RGGWCCY 1 cut(s) 514
PsrI GAACNNNNNNTAC 2 cut(s) 445, 477
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 6 cut(s) 463, 743, 752, 996, 1109, 1230
RsaNI GTAC 6 cut(s) 462, 742, 751, 995, 1108, 1229
SapI GCTCTTC 1 cut(s) 708
SaqAI TTAA 9 cut(s) 30, 575, 642, 735, 957, 968, 1026, 1038, 1161
SatI GCNGC 1 cut(s) 505
Sau3AI GATC 6 cut(s) 165, 202, 274, 535, 1045, 1069
Sau96I GGNCC 2 cut(s) 217, 514
SchI GAGTC 2 cut(s) 181, 660
ScrFI CCNGG 7 cut(s) 161, 232, 422, 459, 617, 806, 1075
SduI GDGCHC 2 cut(s) 301, 919
SfaNI GCATC 1 cut(s) 315
SfcI CTRYAG 1 cut(s) 1086
SinI GGWCC 1 cut(s) 514
SmlI CTYRAG 2 cut(s) 574, 667
SmoI CTYRAG 2 cut(s) 574, 667
SsiI CCGC 2 cut(s) 194, 505
StyD4I CCNGG 7 cut(s) 159, 230, 420, 457, 615, 804, 1073
TaaI ACNGT 3 cut(s) 96, 755, 1031
TaiI ACGT 1 cut(s) 1167
TaqI TCGA 2 cut(s) 482, 525
TatI WGTACW 3 cut(s) 741, 750, 994
TauI GCSGC 1 cut(s) 507
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 9 cut(s) 30, 575, 642, 735, 957, 968, 1026, 1038, 1161
Tru9I TTAA 9 cut(s) 30, 575, 642, 735, 957, 968, 1026, 1038, 1161
TscAI CASTG 2 cut(s) 361, 1239
TseFI GTSAC 2 cut(s) 652, 1077
Tsp45I GTSAC 2 cut(s) 652, 1077
TspDTI ATGAA 5 cut(s) 17, 39, 500, 660, 777
TspRI CASTG 2 cut(s) 361, 1239
Vha464I CTTAAG 1 cut(s) 574
VpaK11BI GGWCC 1 cut(s) 514
XapI RAATTY 4 cut(s) 26, 658, 795, 1058
XceI RCATGY 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 3 cut(s) 41, 130, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.