Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Reverse (-)

17196427 .. 17199710

Gene Structure 3284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGCCGAGAAAAATCAAAACGACGCAGTATCTACACCTCCGTCCTCTTTGGATCTCGAGCTTAACATCGCCGGCTTGAATATCGGCGACCACAAATCGTCAATTTGCCAAGCTGAGCTCCAAATCGCCGGCGAGAACAAATTCCTGGACGAACGTGAAGACTCGAATATCAGCGCTGTTACAAACGGCAACAAGCCGTACACGTCGGCGAGTAATTTCGAGGATCTGCATTTATCAGAGGAGTTGTTGAAGGGTTTGTATGTGGAGATGGGGTTCAAGAAGCCGAGTAAAATCCAGGCAATTACATTGCCTATGATTTTGACGACTCCATACAAAGACTTGGTTGCTCAGGCTCACAATGGCTCAGGGAAGACTACTTGTTTCGTGCTCGGGATGCTCAGCCGTGTCGATCAGAATGTGAAAGCTCCTCAGGCTCTCTGCATTTGTCCCACCAGAGAATTGGCACTTCAGAATGGGGAGGTTATTCGTAAGATGGGGAAGTACACAGGGATAAATGTAGAGAGTGCTGTTCCAATGGAGAAGGAAAAATCTACACCAGTGAAGTACCGGCCTCTGGTATCAGCACAAATTGTGATTGGAACACCTGGTACAGTTAAGAATTTGATGTCATACAAGAAGCTGGGTGTAAGCGGTGTGAAGATTCTTGTTTTCGATGAAGCTGATCACATGCTGGCTGAGGATGGATTTAAAGATGATTCTTTAAGGATAAAAAAGGAGATAGAGAAATTTGACACTCACTGCCAGCCTCAACTTCAGATTCTCAGTTTGGTTGCTGGGTTTTCAGAGCAATCTGAGCATAATTTAGCTAAAGAGAGGTTCTGCCCTCAGGTTTGGCTGATCAGCCCCATCATGCTGATTTCTGTGATGCTTGTTGATCTTTGGGGTTCTGGTGTTCTTCCAGTTTGTTATTCTTATGTAGTGCTCCAGTTTTCTGCTACATTCGATGAAACAGTCAGAAATTTCATCTCAAGGGTGGTGAAGGACAAGAATGAACTATTTGTTAAGAAAGAAGAGCTATCCTTGGCAGCTGTGAAGCAGTACAAGGTCTACTGCCCTGATGAACTAACCAAAATTGATGTGATCAAAACCAAGATATTTGACCTAGGGGAGAACATTGGACAGCGAATCATTTTTGTAGGGTCAAAAGCTAGTGCAAGAATGTTGCATAAACAACTTCATGAGGATGGTTATGCAGTTACAAATGTTCATGGTGCCCTCACTCCTGAACATAGAGACAAGACGATTAAAGAATTCAGAGAGGGTTACACCCAAGTTCTTATTGCAACTGACATGCTTGCTCGAGGCTTTGACAGCCAGCAGGTTAACTGTGTTGTCAATTATGATCTTCCAATAAAGTATCAAGCTTGGTCTAGGAAGCAAGCAGCTCCAGAGCCTGATTATGAGGTGTACTTGCATAGATGTGGTCGGGCAGGGCGTTTTGGCCGCAAGGGAGCTGTGTTTAACTTGCTGTGCCATGATTCTGATCAACAACTCATGGGAAAAATTGAGCAGCATTATAGCATTCAAGTACCGGAGGTAAGAATAATCTTCCATGGTTCCACCTCATCCTGTTCCTATAAAAGATGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

537

Amino Acids

60.22

Weight (kDa)

6.92

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	97 - 268	6.6e-32	DEAD/DEAH box helicase
ResIII	PF04851	112 - 236	9.5e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	371 - 488	7.7e-24	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1330
AccB1I	GGYRCC	1 cut(s)	1232
AccI	GTMKAC	1 cut(s)	1068
AciI	CCGC	2 cut(s)	651, 1465
AclWI	GGATC	2 cut(s)	60, 231
AcoI	YGGCCR	2 cut(s)	3, 1462
AcsI	RAATTY	5 cut(s)	140, 619, 746, 979, 1271
AcuI	CTGAAG	2 cut(s)	452, 758
AfaI	GTAC	7 cut(s)	200, 503, 566, 610, 1061, 1430, 1551
AfeI	AGCGCT	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	574
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	4 cut(s)	79, 250, 277, 1547
AjiI	CACGTC	1 cut(s)	204
AjnI	CCWGG	3 cut(s)	144, 294, 604
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
Alw21I	GWGCWC	3 cut(s)	120, 390, 945
Alw26I	GTCTC	1 cut(s)	1248
AlwI	GGATC	2 cut(s)	60, 231
AlwNI	CAGNNNCTG	1 cut(s)	1415
Ama87I	CYCGRG	3 cut(s)	56, 389, 1320
Aor51HI	AGCGCT	1 cut(s)	175
AoxI	GGCC	3 cut(s)	3, 569, 1462
ApeKI	GCWGC	3 cut(s)	1046, 1403, 1531
ApoI	RAATTY	5 cut(s)	140, 619, 746, 979, 1271
Asp700I	GAANNNNTTC	1 cut(s)	140
AspA2I	CCTAGG	1 cut(s)	1123
AspLEI	GCGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	1009
AvaI	CYCGRG	3 cut(s)	56, 389, 1320
AvrII	CCTAGG	1 cut(s)	1123
AxyI	CCTNAGG	2 cut(s)	429, 846
BaeGI	GKGCMC	1 cut(s)	1237
BanI	GGYRCC	1 cut(s)	1232
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	2 cut(s)	165, 377
Bbv12I	GWGCWC	3 cut(s)	120, 390, 945
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	3 cut(s)	1058, 1415, 1543
BccI	CCATC	6 cut(s)	262, 487, 695, 875, 1199, 1599
BceAI	ACGGC	3 cut(s)	181, 202, 387
BciT130I	CCWGG	3 cut(s)	146, 296, 606
BclI	TGATCA	4 cut(s)	682, 858, 1101, 1504
BcoDI	GTCTC	1 cut(s)	1248
BfaI	CTAG	3 cut(s)	1124, 1170, 1392
BfoI	RGCGCY	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	1330
BisI	GCNGC	4 cut(s)	1047, 1404, 1465, 1532
BlnI	CCTAGG	1 cut(s)	1123
BlpI	GCTNAGC	2 cut(s)	114, 398
BlsI	GCNGC	4 cut(s)	1048, 1405, 1466, 1533
Bme1390I	CCNGG	3 cut(s)	146, 296, 606
BmeT110I	CYCGRG	3 cut(s)	56, 389, 1320
BmgBI	CACGTC	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	1234, 1579
BmrFI	CCNGG	3 cut(s)	146, 296, 606
BmsI	GCATC	2 cut(s)	384, 876
BpiI	GAAGAC	2 cut(s)	165, 377
BpmI	CTGGAG	2 cut(s)	929, 1392
Bpu10I	CCTNAGC	3 cut(s)	348, 364, 696
Bpu1102I	GCTNAGC	2 cut(s)	114, 398
BpuEI	CTTGAG	1 cut(s)	973
BsaBI	GATNNNNATC	1 cut(s)	1503
BsaJI	CCNNGG	3 cut(s)	1041, 1123, 1573
BsaWI	WCCGGW	1 cut(s)	1552
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse118I	RCCGGY	3 cut(s)	71, 128, 567
Bse1I	ACTGG	3 cut(s)	557, 920, 946
Bse21I	CCTNAGG	2 cut(s)	429, 846
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	1503
BseBI	CCWGG	3 cut(s)	146, 296, 606
BseDI	CCNNGG	3 cut(s)	1041, 1123, 1573
BseGI	GGATG	4 cut(s)	399, 706, 1210, 1586
BseJI	GATNNNNATC	1 cut(s)	1503
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	9 cut(s)	105, 362, 378, 412, 443, 687, 796, 804, 860
BseNI	ACTGG	3 cut(s)	557, 920, 946
BseRI	GAGGAG	2 cut(s)	254, 417
BseSI	GKGCMC	1 cut(s)	1237
BseXI	GCAGC	3 cut(s)	1058, 1415, 1543
BseYI	CCCAGC	2 cut(s)	640, 794
BshFI	GGCC	3 cut(s)	5, 571, 1464
BshNI	GGYRCC	1 cut(s)	1232
BsiHKAI	GWGCWC	3 cut(s)	120, 390, 945
BsiHKCI	CYCGRG	3 cut(s)	56, 389, 1320
BsiSI	CCGG	4 cut(s)	72, 129, 568, 1553
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	1 cut(s)	1248
BsmFI	GGGAC	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	1542
BsnI	GGCC	3 cut(s)	5, 571, 1464
BsoBI	CYCGRG	3 cut(s)	56, 389, 1320
Bsp1286I	GDGCHC	4 cut(s)	120, 390, 945, 1237
Bsp143I	GATC	9 cut(s)	52, 223, 409, 682, 858, 895, 1101, 1363, 1504
Bsp1720I	GCTNAGC	2 cut(s)	114, 398
Bsp19I	CCATGG	1 cut(s)	1573
BspACI	CCGC	2 cut(s)	651, 1465
BspANI	GGCC	3 cut(s)	5, 571, 1464
BspCNI	CTCAG	9 cut(s)	106, 361, 377, 411, 442, 688, 795, 805, 859
BspHI	TCATGA	1 cut(s)	1198
BspLI	GGNNCC	2 cut(s)	1234, 1579
BspMI	ACCTGC	1 cut(s)	1330
BspPI	GGATC	2 cut(s)	60, 231
BspQI	GCTCTTC	1 cut(s)	1026
BspT107I	GGYRCC	1 cut(s)	1232
BsrDI	GCAATG	1 cut(s)	305
BsrFI	RCCGGY	3 cut(s)	71, 128, 567
BsrI	ACTGG	3 cut(s)	557, 920, 946
BssAI	RCCGGY	3 cut(s)	71, 128, 567
BssECI	CCNNGG	3 cut(s)	1041, 1123, 1573
BssMI	GATC	9 cut(s)	52, 223, 409, 682, 858, 895, 1101, 1363, 1504
BssT1I	CCWWGG	3 cut(s)	1041, 1123, 1573
Bst2UI	CCWGG	3 cut(s)	146, 296, 606
Bst4CI	ACNGT	3 cut(s)	613, 973, 1349
Bst6I	CTCTTC	1 cut(s)	1026
BstC8I	GCNNGC	7 cut(s)	73, 130, 693, 764, 1317, 1337, 1401
BstDEI	CTNAG	9 cut(s)	114, 348, 364, 398, 429, 696, 782, 813, 846
BstDSI	CCRYGG	1 cut(s)	1573
BstF5I	GGATG	4 cut(s)	399, 706, 1210, 1586
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	9 cut(s)	55, 226, 412, 685, 861, 898, 1104, 1366, 1507
BstMAI	GTCTC	1 cut(s)	1248
BstMBI	GATC	9 cut(s)	52, 223, 409, 682, 858, 895, 1101, 1363, 1504
BstMWI	GCNNNNNNNGC	4 cut(s)	394, 431, 814, 1332
BstNI	CCWGG	3 cut(s)	146, 296, 606
BstNSI	RCATGY	2 cut(s)	691, 1315
BstSCI	CCNGG	3 cut(s)	144, 294, 604
BstSLI	GKGCMC	1 cut(s)	1237
BstV1I	GCAGC	3 cut(s)	1058, 1415, 1543
BstV2I	GAAGAC	2 cut(s)	165, 377
BstX2I	RGATCY	2 cut(s)	52, 223
BstXI	CCANNNNNNTGG	1 cut(s)	460
BstYI	RGATCY	2 cut(s)	52, 223
Bsu36I	CCTNAGG	2 cut(s)	429, 846
BsuRI	GGCC	3 cut(s)	5, 571, 1464
BtgI	CCRYGG	1 cut(s)	1573
BtgZI	GCGATG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	204
BtsCI	GGATG	4 cut(s)	399, 706, 1210, 1586
BtsI	GCAGTG	1 cut(s)	757
BtsIMutI	CAGTG	2 cut(s)	564, 757
BveI	ACCTGC	1 cut(s)	1330
Cac8I	GCNNGC	7 cut(s)	73, 130, 693, 764, 1317, 1337, 1401
CaiI	CAGNNNCTG	1 cut(s)	1415
CciI	TCATGA	1 cut(s)	1198
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	3 cut(s)	71, 128, 567
CseI	GACGC	1 cut(s)	32
CsiI	ACCWGGT	1 cut(s)	604
Csp6I	GTAC	7 cut(s)	199, 502, 565, 609, 1060, 1429, 1550
CviAII	CATG	8 cut(s)	688, 871, 1199, 1229, 1312, 1496, 1516, 1574
CviQI	GTAC	7 cut(s)	199, 502, 565, 609, 1060, 1429, 1550
DdeI	CTNAG	9 cut(s)	114, 348, 364, 398, 429, 696, 782, 813, 846
DpnI	GATC	9 cut(s)	54, 225, 411, 684, 860, 897, 1103, 1365, 1506
DpnII	GATC	9 cut(s)	52, 223, 409, 682, 858, 895, 1101, 1363, 1504
DraI	TTTAAA	1 cut(s)	709
EaeI	YGGCCR	2 cut(s)	3, 1462
Eam1104I	CTCTTC	1 cut(s)	1026
EarI	CTCTTC	1 cut(s)	1026
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	1041, 1123, 1573
Eco24I	GRGCYC	1 cut(s)	120
Eco47III	AGCGCT	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	2 cut(s)	452, 758
Eco81I	CCTNAGG	2 cut(s)	429, 846
Eco88I	CYCGRG	3 cut(s)	56, 389, 1320
EcoICRI	GAGCTC	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	1271
EcoRII	CCWGG	3 cut(s)	144, 294, 604
EcoT14I	CCWWGG	3 cut(s)	1041, 1123, 1573
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	3 cut(s)	1041, 1123, 1573
FaeI	CATG	8 cut(s)	691, 874, 1202, 1232, 1315, 1499, 1519, 1577
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	8 cut(s)	687, 870, 1198, 1228, 1311, 1495, 1515, 1573
FbaI	TGATCA	4 cut(s)	682, 858, 1101, 1504
FblI	GTMKAC	1 cut(s)	1068
Fnu4HI	GCNGC	4 cut(s)	1047, 1404, 1465, 1532
FokI	GGATG	4 cut(s)	406, 713, 1217, 1573
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	4 cut(s)	1047, 1404, 1465, 1532
FspBI	CTAG	3 cut(s)	1124, 1170, 1392
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	4 cut(s)	1047, 1404, 1465, 1532
GsaI	CCCAGC	2 cut(s)	644, 798
GsuI	CTGGAG	2 cut(s)	929, 1392
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	5, 571, 1464
HapII	CCGG	4 cut(s)	72, 129, 568, 1553
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	8 cut(s)	691, 874, 1202, 1232, 1315, 1499, 1519, 1577
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	1345
HindII	GTYRAC	1 cut(s)	1345
HindIII	AAGCTT	1 cut(s)	1383
HinfI	GANTC	7 cut(s)	161, 325, 661, 716, 778, 1146, 1499
HpaI	GTTAAC	1 cut(s)	1345
HpaII	CCGG	4 cut(s)	72, 129, 568, 1553
HphI	GGTGA	1 cut(s)	1009
Hpy166II	GTNNAC	5 cut(s)	201, 504, 1069, 1345, 1429
Hpy188I	TCNGA	9 cut(s)	238, 414, 471, 777, 805, 814, 977, 1277, 1504
Hpy188III	TCNNGA	6 cut(s)	56, 277, 391, 1199, 1244, 1409
Hpy8I	GTNNAC	5 cut(s)	201, 504, 1069, 1345, 1429
Hpy99I	CGWCG	2 cut(s)	26, 208
HpyAV	CCTTC	3 cut(s)	244, 535, 994
HpyCH4III	ACNGT	3 cut(s)	613, 973, 1349
HpyCH4IV	ACGT	2 cut(s)	154, 203
HpyCH4V	TGCA	7 cut(s)	229, 441, 1175, 1186, 1214, 1304, 1435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	394, 431, 814, 1332
HpyF3I	CTNAG	9 cut(s)	114, 348, 364, 398, 429, 696, 782, 813, 846
HpySE526I	ACGT	2 cut(s)	154, 203
Hsp92II	CATG	8 cut(s)	691, 874, 1202, 1232, 1315, 1499, 1519, 1577
HspAI	GCGC	1 cut(s)	174
KroI	GCCGGC	2 cut(s)	71, 128
KroNI	GCCGGC	2 cut(s)	73, 130
Ksp22I	TGATCA	4 cut(s)	682, 858, 1101, 1504
KspAI	GTTAAC	1 cut(s)	1345
Kzo9I	GATC	9 cut(s)	52, 223, 409, 682, 858, 895, 1101, 1363, 1504
LguI	GCTCTTC	1 cut(s)	1026
LmnI	GCTCC	5 cut(s)	123, 430, 948, 1411, 1472
Lsp1109I	GCAGC	3 cut(s)	1058, 1415, 1543
LweI	GCATC	2 cut(s)	384, 876
MabI	ACCWGGT	1 cut(s)	604
MaeI	CTAG	3 cut(s)	1124, 1170, 1392
MaeII	ACGT	2 cut(s)	154, 203
MaeIII	GTNAC	3 cut(s)	178, 1216, 1283
MalI	GATC	9 cut(s)	54, 225, 411, 684, 860, 897, 1103, 1365, 1506
MboI	GATC	9 cut(s)	52, 223, 409, 682, 858, 895, 1101, 1363, 1504
MboII	GAAGA	7 cut(s)	170, 382, 670, 908, 1043, 1358, 1561
MflI	RGATCY	2 cut(s)	52, 223
MhlI	GDGCHC	4 cut(s)	120, 390, 945, 1237
MlyI	GAGTC	2 cut(s)	155, 319
MreI	CGCCGGCG	1 cut(s)	128
MroNI	GCCGGC	2 cut(s)	71, 128
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	8 cut(s)	63, 615, 708, 722, 1023, 1266, 1344, 1482
MslI	CAYNNNNRTG	2 cut(s)	1203, 1440
MspA1I	CMGCKG	1 cut(s)	1049
MspI	CCGG	4 cut(s)	72, 129, 568, 1553
MspR9I	CCNGG	3 cut(s)	146, 296, 606
Mva1269I	GAATGC	1 cut(s)	1542
MvaI	CCWGG	3 cut(s)	146, 296, 606
MwoI	GCNNNNNNNGC	4 cut(s)	394, 431, 814, 1332
NaeI	GCCGGC	2 cut(s)	73, 130
NcoI	CCATGG	1 cut(s)	1573
NdeII	GATC	9 cut(s)	52, 223, 409, 682, 858, 895, 1101, 1363, 1504
NgoMIV	GCCGGC	2 cut(s)	71, 128
NlaIII	CATG	8 cut(s)	691, 874, 1202, 1232, 1315, 1499, 1519, 1577
NlaIV	GGNNCC	2 cut(s)	1234, 1579
NmeAIII	GCCGAG	2 cut(s)	31, 309
NspI	RCATGY	2 cut(s)	691, 1315
PaeR7I	CTCGAG	2 cut(s)	56, 1320
PagI	TCATGA	1 cut(s)	1198
PciSI	GCTCTTC	1 cut(s)	1026
PcsI	WCGNNNNNNNCGW	1 cut(s)	1453
PctI	GAATGC	1 cut(s)	1542
PdiI	GCCGGC	2 cut(s)	73, 130
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	5 cut(s)	661, 716, 778, 1146, 1499
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	1048, 1405, 1466, 1533
PleI	GAGTC	2 cut(s)	155, 319
PpsI	GAGTC	2 cut(s)	155, 319
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	144, 294, 604
PspFI	CCCAGC	2 cut(s)	640, 794
PspGI	CCWGG	3 cut(s)	144, 294, 604
PspN4I	GGNNCC	2 cut(s)	1234, 1579
PspXI	VCTCGAGB	1 cut(s)	1320
PsrI	GAACNNNNNNTAC	2 cut(s)	592, 624
PstNI	CAGNNNCTG	1 cut(s)	1415
PsuI	RGATCY	2 cut(s)	52, 223
PvuII	CAGCTG	1 cut(s)	1049
RsaI	GTAC	7 cut(s)	200, 503, 566, 610, 1061, 1430, 1551
RsaNI	GTAC	7 cut(s)	199, 502, 565, 609, 1060, 1429, 1550
RseI	CAYNNNNRTG	2 cut(s)	1203, 1440
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	1026
SaqAI	TTAA	8 cut(s)	63, 615, 708, 722, 1023, 1266, 1344, 1482
SatI	GCNGC	4 cut(s)	1047, 1404, 1465, 1532
Sau3AI	GATC	9 cut(s)	52, 223, 409, 682, 858, 895, 1101, 1363, 1504
SchI	GAGTC	2 cut(s)	155, 319
ScrFI	CCNGG	3 cut(s)	146, 296, 606
SduI	GDGCHC	4 cut(s)	120, 390, 945, 1237
SexAI	ACCWGGT	1 cut(s)	604
SfaNI	GCATC	2 cut(s)	384, 876
Sfr274I	CTCGAG	2 cut(s)	56, 1320
SgrAI	CRCCGGYG	1 cut(s)	128
SlaI	CTCGAG	2 cut(s)	56, 1320
SmiMI	CAYNNNNRTG	2 cut(s)	1203, 1440
SmlI	CTYRAG	3 cut(s)	56, 988, 1320
SmoI	CTYRAG	3 cut(s)	56, 988, 1320
SsiI	CCGC	2 cut(s)	651, 1465
SspMI	CTAG	3 cut(s)	1124, 1170, 1392
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	3 cut(s)	144, 294, 604
StyI	CCWWGG	3 cut(s)	1041, 1123, 1573
TaaI	ACNGT	3 cut(s)	613, 973, 1349
TaiI	ACGT	2 cut(s)	157, 206
TaqI	TCGA	7 cut(s)	57, 164, 219, 408, 672, 963, 1321
TatI	WGTACW	3 cut(s)	501, 1059, 1428
TauI	GCSGC	1 cut(s)	1467
TfiI	GAWTC	5 cut(s)	661, 716, 778, 1146, 1499
Tru1I	TTAA	8 cut(s)	63, 615, 708, 722, 1023, 1266, 1344, 1482
Tru9I	TTAA	8 cut(s)	63, 615, 708, 722, 1023, 1266, 1344, 1482
TscAI	CASTG	2 cut(s)	564, 764
TseI	GCWGC	3 cut(s)	1046, 1403, 1531
TspDTI	ATGAA	7 cut(s)	690, 973, 981, 1026, 1095, 1187, 1217
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	564, 764
XapI	RAATTY	5 cut(s)	140, 619, 746, 979, 1271
XceI	RCATGY	2 cut(s)	691, 1315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XhoI	CTCGAG	2 cut(s)	56, 1320
XmaJI	CCTAGG	1 cut(s)	1123
XmiI	GTMKAC	1 cut(s)	1068
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	3 cut(s)	1124, 1170, 1392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.