Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Forward (+)

32488978 .. 32494537

Gene Structure 5560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGATTTTGACTCCTCCGCACAAAGATCTGGTTGCTCAGGCCAATAATGGTTCCGGGAAGACGACCTGTTTCGTGCTTGGTATGCTCGGCCGTGTTGATCCCACTGTGAAAGCTCCTCAGGCTCTCTGCATTTGTCCCACCAGAGAGTTGGCTATTCAGAATATGGAGGTTCTTCAGAAAATGGGGAAATACACTGGGATTACTTTGGAGTGTGCCATCCCTTCAGATAGGGAGAGGAATGCACCTTCGCCTAACTTCCGGGCGCCAGTAACGGCACAAATTGTGATTGAAACTCCTGGTACTATCAAGAGATGGACGATGATGAAAAAGCTGGGTGTAAGCCTCGTGAAGGTCCTTGTTTTCGATGAGGCTGATCACATGCTGGCTGAGGATGGCTTCCAAGATGATTCCTTAAGGATAAAGAGGGACACAGAAAAAGTTAGCCCTAACTGCCAGGTTATTCTGTTTTCAGCTACATTTAATGAAAGAGTCACAAATTTTGTCTCAAGCATTGTGAAACGTGGTAACAATCAACTTTTTGTCAAGAAAGAAGAGCTATCTTTGGAGGGTGTTAAGCAGTACAAGGTGTACTGTCCTGATGAACTGAGCGAGATTGAGGTTATCAAAACCAAATTTTTGATCTGGGAGAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

218

Amino Acids

24.48

Weight (kDa)

8.48

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	7 - 165	4.3e-33	DEAD/DEAH box helicase
ResIII	PF04851	7 - 161	9.3e-07	Type III restriction enzyme, res subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	262
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	496, 632
AcuI	CTGAAG	2 cut(s)	158, 207
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	3 cut(s)	301, 581, 590
AfiI	CCNNNNNNNGG	1 cut(s)	349
AflII	CTTAAG	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	295, 453
AluBI	AGCT	4 cut(s)	113, 331, 473, 556
AluI	AGCT	4 cut(s)	113, 331, 473, 556
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	39, 88
ApoI	RAATTY	2 cut(s)	496, 632
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	2 cut(s)	55, 260
AvaII	GGWCC	1 cut(s)	352
AxyI	CCTNAGG	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	387
BccI	CCATC	3 cut(s)	224, 306, 386
BceAI	ACGGC	2 cut(s)	75, 288
BciT130I	CCWGG	2 cut(s)	297, 455
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	2 cut(s)	55, 260
BcoDI	GTCTC	1 cut(s)	508
BfoI	RGCGCY	1 cut(s)	266
BfrI	CTTAAG	1 cut(s)	412
BglII	AGATCT	1 cut(s)	25
Bme1390I	CCNGG	4 cut(s)	55, 260, 297, 455
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	52, 264
BmrFI	CCNGG	4 cut(s)	55, 260, 297, 455
BmrI	ACTGGG	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	65
Bpu10I	CCTNAGC	2 cut(s)	36, 387
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	2 cut(s)	55, 260
BsaHI	GRCGYC	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	2 cut(s)	199, 266
Bse21I	CCTNAGG	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	297, 455
BseGI	GGATG	2 cut(s)	216, 397
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMII	CTCAG	4 cut(s)	50, 131, 378, 596
BseNI	ACTGG	2 cut(s)	199, 266
BseRI	GAGGAG	1 cut(s)	105
BseX3I	CGGCCG	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	331
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	41, 90
BshNI	GGYRCC	1 cut(s)	262
BsiEI	CGRYCG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	54, 259
BslFI	GGGAC	2 cut(s)	120, 440
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	2 cut(s)	120, 440
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	41, 90
Bsp143I	GATC	4 cut(s)	25, 97, 373, 639
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	2 cut(s)	41, 90
BspCNI	CTCAG	4 cut(s)	49, 130, 379, 597
BspLI	GGNNCC	2 cut(s)	52, 264
BspPI	GGATC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	262
BspTI	CTTAAG	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	199, 266
BssMI	GATC	4 cut(s)	25, 97, 373, 639
BssNI	GRCGYC	1 cut(s)	263
BssSI	CACGAG	1 cut(s)	344
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	297, 455
Bst4CI	ACNGT	2 cut(s)	106, 593
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	263
BstAFI	CTTAAG	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	4 cut(s)	36, 117, 387, 605
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	216, 397
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	4 cut(s)	28, 100, 376, 642
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	4 cut(s)	25, 97, 373, 639
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 119, 450
BstNI	CCWGG	2 cut(s)	297, 455
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	4 cut(s)	53, 258, 295, 453
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	25
BstZI	CGGCCG	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	41, 90
BtsCI	GGATG	2 cut(s)	216, 397
BtsIMutI	CAGTG	2 cut(s)	102, 192
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	300, 580, 589
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	3 cut(s)	300, 580, 589
DdeI	CTNAG	4 cut(s)	36, 117, 387, 605
DinI	GGCGCC	1 cut(s)	264
DpnI	GATC	4 cut(s)	27, 99, 375, 641
DpnII	GATC	4 cut(s)	25, 97, 373, 639
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
EclXI	CGGCCG	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	352
Eco52I	CGGCCG	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	158, 207
Eco81I	CCTNAGG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	295, 453
EgeI	GGCGCC	1 cut(s)	264
EheI	GGCGCC	1 cut(s)	264
FaeI	CATG	1 cut(s)	382
FaiI	YATR	3 cut(s)	83, 164, 380
FaqI	GGGAC	2 cut(s)	120, 440
FatI	CATG	1 cut(s)	378
FbaI	TGATCA	1 cut(s)	373
FokI	GGATG	2 cut(s)	203, 404
GlaI	GCGC	1 cut(s)	264
GsaI	CCCAGC	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	41, 90
HapII	CCGG	2 cut(s)	54, 259
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	3 cut(s)	10, 407, 489
HpaII	CCGG	2 cut(s)	54, 259
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	3 cut(s)	159, 177, 226
Hpy188III	TCNNGA	4 cut(s)	307, 346, 544, 596
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	3 cut(s)	231, 255, 343
HpyCH4III	ACNGT	2 cut(s)	106, 593
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	2 cut(s)	129, 242
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 119, 450
HpyF3I	CTNAG	4 cut(s)	36, 117, 387, 605
HpySE526I	ACGT	1 cut(s)	520
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	263
KasI	GGCGCC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	25, 97, 373, 639
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	1 cut(s)	118
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	3 cut(s)	268, 490, 524
MalI	GATC	4 cut(s)	27, 99, 375, 641
MboI	GATC	4 cut(s)	25, 97, 373, 639
MboII	GAAGA	3 cut(s)	70, 164, 563
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	4 cut(s)	279, 496, 632, 652
Mly113I	GGCGCC	1 cut(s)	263
MlyI	GAGTC	2 cut(s)	4, 498
MseI	TTAA	3 cut(s)	413, 480, 573
MspCI	CTTAAG	1 cut(s)	412
MspI	CCGG	2 cut(s)	54, 259
MspR9I	CCNGG	4 cut(s)	55, 260, 297, 455
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	2 cut(s)	297, 455
MwoI	GCNNNNNNNGC	3 cut(s)	82, 119, 450
NarI	GGCGCC	1 cut(s)	263
NciI	CCSGG	2 cut(s)	55, 260
NdeII	GATC	4 cut(s)	25, 97, 373, 639
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	2 cut(s)	52, 264
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	490
NspI	RCATGY	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	546
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	53
PleI	GAGTC	2 cut(s)	4, 497
PluTI	GGCGCC	1 cut(s)	266
PpsI	GAGTC	2 cut(s)	4, 497
PpuMI	RGGWCCY	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	295, 453
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	2 cut(s)	295, 453
PspN4I	GGNNCC	2 cut(s)	52, 264
PspPI	GGNCC	1 cut(s)	352
PspPPI	RGGWCCY	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	3 cut(s)	301, 581, 590
RsaNI	GTAC	3 cut(s)	300, 580, 589
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	3 cut(s)	413, 480, 573
Sau3AI	GATC	4 cut(s)	25, 97, 373, 639
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	2 cut(s)	4, 498
ScrFI	CCNGG	4 cut(s)	55, 260, 297, 455
SfoI	GGCGCC	1 cut(s)	264
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	412, 505
SmoI	CTYRAG	2 cut(s)	412, 505
Sse9I	AATT	4 cut(s)	279, 496, 632, 652
SsiI	CCGC	1 cut(s)	17
SspDI	GGCGCC	1 cut(s)	262
StyD4I	CCNGG	4 cut(s)	53, 258, 295, 453
TaaI	ACNGT	2 cut(s)	106, 593
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	1 cut(s)	363
TasI	AATT	4 cut(s)	279, 496, 632, 652
TatI	WGTACW	2 cut(s)	579, 588
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	413, 480, 573
Tru9I	TTAA	3 cut(s)	413, 480, 573
TscAI	CASTG	2 cut(s)	109, 199
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	3 cut(s)	338, 498, 615
TspRI	CASTG	2 cut(s)	109, 199
Vha464I	CTTAAG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	352
XagI	CCTNNNNNAGG	1 cut(s)	347
XapI	RAATTY	2 cut(s)	496, 632
XceI	RCATGY	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.